Wall clock time and date at job start Wed Apr 1 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.52998 * 109.46933 * 120.00039 * 2 1 3 5 5 O 1.42903 * 109.47217 * 294.99649 * 4 2 1 6 6 C 1.42899 * 114.00445 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47534 * 180.02562 * 6 5 4 8 8 O 1.20826 * 119.99557 * 0.02562 * 7 6 5 9 9 O 1.34226 * 120.00224 * 180.02562 * 7 6 5 10 10 C 1.45202 * 117.00068 * 180.02562 * 9 7 6 11 11 C 1.53040 * 109.45859 * 270.02873 * 10 9 7 12 12 C 1.53195 * 109.31238 * 178.60276 * 11 10 9 13 13 N 1.46927 * 108.76603 * 54.65367 * 12 11 10 14 14 C 1.36926 * 120.63057 * 126.40512 * 13 12 11 15 15 H 1.08002 * 120.00229 * 331.83345 * 14 13 12 16 16 C 1.38820 * 120.00178 * 151.82462 * 14 13 12 17 17 N 1.31620 * 119.99731 * 343.07722 * 16 14 13 18 18 Si 1.86796 * 120.00014 * 163.06955 * 16 14 13 19 19 H 1.48500 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46792 * 120.00650 * 18 16 14 21 21 H 1.48497 * 109.47099 * 240.00428 * 18 16 14 22 22 C 1.46926 * 118.73788 * 306.38676 * 13 12 11 23 23 C 1.53043 * 109.45967 * 149.97321 * 10 9 7 24 24 C 1.50698 * 109.47393 * 239.99642 * 2 1 3 25 25 C 1.38234 * 120.00182 * 299.73332 * 24 2 1 26 26 C 1.38230 * 120.00122 * 179.80747 * 25 24 2 27 27 C 1.38236 * 120.00277 * 0.39165 * 26 25 24 28 28 C 1.38235 * 119.99688 * 359.86165 * 27 26 25 29 29 C 1.38237 * 119.99925 * 120.00098 * 24 2 1 30 30 H 1.09002 * 109.47540 * 300.00598 * 1 2 3 31 31 H 1.09011 * 109.46906 * 59.99608 * 1 2 3 32 32 H 1.08996 * 109.47781 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47393 * 54.99981 * 4 2 1 34 34 H 1.09008 * 109.47211 * 175.00034 * 4 2 1 35 35 H 1.09004 * 109.47089 * 300.00578 * 6 5 4 36 36 H 1.09005 * 109.46753 * 60.00128 * 6 5 4 37 37 H 1.08996 * 109.45789 * 29.99858 * 10 9 7 38 38 H 1.09001 * 109.49875 * 298.56236 * 11 10 9 39 39 H 1.09002 * 109.49701 * 58.66187 * 11 10 9 40 40 H 1.08996 * 109.59361 * 294.86570 * 12 11 10 41 41 H 1.08999 * 109.70469 * 174.50490 * 12 11 10 42 42 H 0.96999 * 119.99587 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.58863 * 293.81910 * 22 13 12 44 44 H 1.08998 * 109.70206 * 173.46757 * 22 13 12 45 45 H 1.09001 * 109.49466 * 301.34010 * 23 10 9 46 46 H 1.09004 * 109.49471 * 61.43492 * 23 10 9 47 47 H 1.07997 * 119.99911 * 359.97438 * 25 24 2 48 48 H 1.08001 * 120.00001 * 180.23015 * 26 25 24 49 49 H 1.07994 * 120.00479 * 179.83341 * 27 26 25 50 50 H 1.08003 * 120.00246 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00277 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 0.0168 2.4131 6 6 2.0912 -0.5744 3.6412 7 6 1.6402 0.2824 4.7959 8 8 1.0147 1.2952 4.5884 9 8 1.9332 -0.0795 6.0548 10 6 1.4663 0.7933 7.1172 11 6 2.5346 1.8472 7.4176 12 6 2.0246 2.7872 8.5145 13 7 1.6260 1.9836 9.6781 14 6 2.1343 2.2547 10.9203 15 1 3.1110 2.7053 11.0176 16 6 1.3942 1.9505 12.0547 17 7 0.1020 1.7206 11.9552 18 14 2.2321 1.8674 13.7221 19 1 3.6786 2.1642 13.5645 20 1 1.6188 2.8656 14.6345 21 1 2.0648 0.5067 14.2928 22 6 0.6714 0.8838 9.4835 23 6 1.1964 -0.0347 8.3757 24 6 2.0323 -0.7105 -1.2304 25 6 1.7030 -2.0355 -1.4463 26 6 2.1605 -2.6860 -2.5769 27 6 2.9542 -2.0139 -3.4876 28 6 3.2878 -0.6904 -3.2691 29 6 2.8271 -0.0387 -2.1403 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 1.6573 -1.5698 3.7365 36 1 3.1786 -0.6500 3.6474 37 1 0.5469 1.2875 6.8035 38 1 3.4466 1.3548 7.7554 39 1 2.7434 2.4212 6.5148 40 1 1.1654 3.3472 8.1455 41 1 2.8157 3.4796 8.8022 42 1 -0.4151 1.5077 12.7478 43 1 -0.2983 1.2886 9.1936 44 1 0.5690 0.3179 10.4095 45 1 0.4527 -0.8004 8.1548 46 1 2.1212 -0.5092 8.7042 47 1 1.0860 -2.5617 -0.7330 48 1 1.9002 -3.7202 -2.7475 49 1 3.3139 -2.5229 -4.3695 50 1 3.9082 -0.1653 -3.9803 51 1 3.0877 0.9954 -1.9697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845497969.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:47 Heat of formation + Delta-G solvation = -109.956354 kcal Electronic energy + Delta-G solvation = -29520.997331 eV Core-core repulsion = 25385.089735 eV Total energy + Delta-G solvation = -4135.907596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.69632 -40.50973 -39.38439 -38.66096 -37.26062 -35.53990 -34.61275 -32.22718 -31.77869 -31.53783 -30.59434 -29.53736 -27.31133 -26.80363 -24.25055 -24.10494 -23.84463 -23.28916 -22.03767 -21.07124 -21.01925 -18.91323 -18.85131 -18.08438 -17.77088 -17.42684 -17.14408 -16.80977 -16.58213 -15.96339 -15.94311 -15.63817 -15.42328 -15.11630 -14.91265 -14.74154 -14.52443 -14.32779 -14.19789 -14.08086 -13.99219 -13.41352 -13.31672 -13.14840 -13.07382 -12.92944 -12.68880 -12.64111 -12.46549 -12.30901 -12.16616 -12.04680 -11.95927 -11.86875 -11.73718 -11.58772 -11.53193 -11.34319 -11.08253 -10.73648 -10.57767 -9.79491 -9.62278 -8.76925 -7.91080 -5.37279 0.43586 0.52500 1.12873 1.28491 1.48015 1.49713 1.60562 2.50440 2.75654 2.97037 3.25783 3.50608 3.62915 3.77311 3.78109 3.83231 3.86099 4.08997 4.13592 4.15419 4.18914 4.20859 4.21860 4.32878 4.35175 4.37665 4.55049 4.59249 4.61912 4.65648 4.72638 4.79530 4.81782 4.85534 4.94229 4.96400 5.02949 5.09957 5.14809 5.20105 5.20623 5.32890 5.38244 5.47274 5.60684 5.62146 5.66126 5.67671 5.73804 5.98838 6.14048 6.35565 6.72088 7.10443 7.78514 8.31876 9.16868 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.037934 B = 0.001495 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.951181 B =18720.774680 C =18774.368162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 H 0.078 0.922 4 C 0.070 3.930 5 O -0.393 6.393 6 C 0.078 3.922 7 C 0.453 3.547 8 O -0.530 6.530 9 O -0.349 6.349 10 C 0.106 3.894 11 C -0.132 4.132 12 C 0.146 3.854 13 N -0.609 5.609 14 C -0.266 4.266 15 H 0.070 0.930 16 C -0.048 4.048 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.180 3.820 23 C -0.121 4.121 24 C -0.084 4.084 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.127 4.127 29 C -0.128 4.128 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.012 0.988 41 H 0.067 0.933 42 H 0.252 0.748 43 H -0.001 1.001 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.132 0.868 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.529 -11.672 -30.942 33.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 H 0.097 0.903 4 C -0.006 4.006 5 O -0.312 6.312 6 C 0.001 3.999 7 C 0.297 3.703 8 O -0.419 6.419 9 O -0.266 6.266 10 C 0.052 3.948 11 C -0.172 4.172 12 C 0.020 3.980 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.088 0.912 16 C -0.243 4.243 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.190 1.190 20 H -0.220 1.220 21 H -0.214 1.214 22 C 0.054 3.946 23 C -0.160 4.160 24 C -0.084 4.084 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.145 4.145 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.150 0.850 48 H 0.157 0.843 49 H 0.157 0.843 50 H 0.155 0.845 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.138 -11.201 -30.849 33.389 hybrid contribution -0.078 0.329 1.135 1.185 sum 6.060 -10.871 -29.714 32.215 Atomic orbital electron populations 1.21762 0.93663 1.02480 1.01643 1.20009 0.96774 0.99475 0.90333 0.90331 1.22772 0.99763 0.95060 0.83007 1.87917 1.79172 1.50857 1.13300 1.21849 1.02426 0.95152 0.80485 1.24072 0.76314 0.84973 0.84939 1.90673 1.38277 1.27306 1.85654 1.86505 1.72264 1.52613 1.15234 1.22640 0.97276 0.90508 0.84410 1.22271 0.98630 0.97173 0.99098 1.20958 0.97304 0.92599 0.87158 1.44372 1.51762 1.33087 1.04082 1.19572 0.98507 1.38060 0.83489 0.91220 1.25840 0.95349 1.01700 1.01454 1.70180 1.06017 1.52742 1.29177 0.85164 0.78448 0.76969 0.79576 1.19006 1.22028 1.21400 1.20597 0.89738 0.88329 0.95976 1.22183 1.02339 0.98461 0.92977 1.19709 0.98254 0.94631 0.95795 1.21228 1.00319 0.94102 0.98373 1.21449 0.97749 1.00916 0.94257 1.21489 0.98356 0.94939 1.00087 1.21424 1.00101 0.95377 0.97596 1.21309 0.97916 1.00537 0.94847 0.93113 0.92413 0.91607 0.90873 0.91584 0.85912 0.86082 0.91928 0.90723 0.91372 0.97007 0.91479 0.93898 0.98261 0.91207 0.90289 0.91027 0.84967 0.84273 0.84335 0.84513 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.90 71.98 0.64 -1.57 16 2 C -0.05 -0.72 2.80 -11.54 -0.03 -0.75 16 3 H 0.08 1.33 7.88 -2.39 -0.02 1.32 16 4 C 0.07 1.00 5.05 71.98 0.36 1.37 16 5 O -0.39 -8.48 9.41 -129.90 -1.22 -9.70 16 6 C 0.08 1.43 6.53 71.23 0.47 1.89 16 7 C 0.45 13.25 8.01 71.23 0.57 13.82 16 8 O -0.53 -19.95 15.72 28.40 0.45 -19.51 16 9 O -0.35 -10.79 9.88 -51.38 -0.51 -11.30 16 10 C 0.11 3.87 2.42 30.62 0.07 3.95 16 11 C -0.13 -4.86 5.72 30.67 0.18 -4.68 16 12 C 0.15 6.32 6.52 86.36 0.56 6.88 16 13 N -0.61 -31.05 2.99 -699.10 -2.09 -33.14 16 14 C -0.27 -14.64 9.58 84.04 0.81 -13.83 16 15 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 16 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 17 N -0.94 -55.04 11.19 21.65 0.24 -54.80 16 18 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 C 0.18 8.72 5.30 86.36 0.46 9.18 16 23 C -0.12 -4.61 5.74 30.67 0.18 -4.43 16 24 C -0.08 -1.15 4.78 -19.87 -0.09 -1.25 16 25 C -0.12 -1.46 8.76 22.27 0.20 -1.27 16 26 C -0.13 -1.33 10.05 22.27 0.22 -1.11 16 27 C -0.13 -1.36 10.05 22.27 0.22 -1.14 16 28 C -0.13 -1.45 10.05 22.27 0.22 -1.23 16 29 C -0.13 -1.71 9.67 22.27 0.22 -1.50 16 30 H 0.05 1.02 7.82 -2.39 -0.02 1.00 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.88 7.41 -2.39 -0.02 0.87 16 33 H 0.07 0.79 7.55 -2.39 -0.02 0.77 16 34 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.06 2.53 7.16 -2.39 -0.02 2.51 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 2.78 7.93 -2.39 -0.02 2.76 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 45 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 47 H 0.13 1.22 7.16 -2.91 -0.02 1.19 16 48 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 49 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 50 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 51 H 0.13 1.48 7.95 -2.91 -0.02 1.45 16 Total: -1.00 -70.34 413.66 5.45 -64.88 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.89 Total: 15.02 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 5.66 Total: 2.09 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -1.85 Total: -87.93 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.28 Total: -40.51 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.34 5.45 -64.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845497969.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.074 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds