Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47345 * 2 1 4 4 C 1.53000 * 109.46570 * 119.99802 * 2 1 3 5 5 O 1.42896 * 109.47130 * 294.99810 * 4 2 1 6 6 C 1.52996 * 109.47225 * 239.99339 * 2 1 3 7 7 C 1.53044 * 109.46134 * 60.00610 * 6 2 1 8 8 C 1.53194 * 109.31667 * 181.37152 * 7 6 2 9 9 N 1.46926 * 108.77179 * 305.36381 * 8 7 6 10 10 C 1.34775 * 120.62817 * 233.58517 * 9 8 7 11 11 O 1.21280 * 120.00014 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00040 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.47436 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93634 * 269.73208 * 13 12 10 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31556 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47223 * 90.00094 * 22 20 18 24 24 H 1.48499 * 109.47046 * 209.99924 * 22 20 18 25 25 H 1.48492 * 109.47326 * 329.99691 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 C 1.46921 * 118.74127 * 53.86026 * 9 8 7 29 29 C 1.53043 * 109.44993 * 180.02562 * 6 2 1 30 30 H 1.08992 * 109.47535 * 300.00538 * 1 2 3 31 31 H 1.09004 * 109.47008 * 60.00477 * 1 2 3 32 32 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47366 * 55.00241 * 4 2 1 34 34 H 1.09001 * 109.46681 * 174.99804 * 4 2 1 35 35 H 0.96706 * 114.00204 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.46664 * 300.03210 * 6 2 1 37 37 H 1.08996 * 109.49958 * 61.41223 * 7 6 2 38 38 H 1.09004 * 109.49185 * 301.32340 * 7 6 2 39 39 H 1.09000 * 109.58334 * 185.57579 * 8 7 6 40 40 H 1.08998 * 109.69939 * 65.21896 * 8 7 6 41 41 H 1.08999 * 109.47119 * 60.00120 * 12 10 9 42 42 H 1.09004 * 109.47334 * 300.00265 * 12 10 9 43 43 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 44 44 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 45 45 H 0.97002 * 119.99992 * 180.02562 * 21 20 18 46 46 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 47 47 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 48 48 H 1.09005 * 109.58918 * 65.92581 * 28 9 8 49 49 H 1.08997 * 109.58842 * 186.35428 * 28 9 8 50 50 H 1.08998 * 109.49582 * 298.57890 * 29 6 2 51 51 H 1.08996 * 109.49552 * 58.67089 * 29 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6618 0.0168 2.4130 6 6 2.0400 -0.7214 -1.2491 7 6 1.5299 0.0002 -2.4987 8 6 2.0139 -0.7444 -3.7469 9 7 3.4757 -0.8770 -3.6812 10 6 4.2497 -0.4582 -4.7020 11 8 3.7407 0.0340 -5.6867 12 6 5.7477 -0.6006 -4.6194 13 6 6.3738 -0.0614 -5.8797 14 6 6.5902 -0.9014 -6.9568 15 6 7.1585 -0.4089 -8.1152 16 6 7.5237 0.9287 -8.1934 17 8 8.0885 1.4143 -9.3283 18 6 8.3138 2.7426 -9.3801 19 1 8.1233 3.3568 -8.5124 20 6 8.7901 3.3201 -10.5472 21 7 9.0218 2.5719 -11.6042 22 14 9.1029 5.1603 -10.6186 23 1 10.5006 5.4414 -10.2031 24 1 8.8921 5.6447 -12.0064 25 1 8.1646 5.8578 -9.7030 26 6 7.3103 1.7684 -7.1080 27 6 6.7365 1.2712 -5.9545 28 6 4.0773 -1.4803 -2.4843 29 6 3.5704 -0.7216 -1.2483 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7198 1.2952 34 1 3.1262 -0.7995 1.2057 35 1 1.9530 -0.3828 3.2441 36 1 1.6762 -1.7489 -1.2492 37 1 1.9135 1.0203 -2.5118 38 1 0.4401 0.0211 -2.4872 39 1 1.7377 -0.1812 -4.6383 40 1 1.5585 -1.7340 -3.7841 41 1 6.0070 -1.6533 -4.5070 42 1 6.1190 -0.0412 -3.7607 43 1 6.3106 -1.9427 -6.8935 44 1 7.3232 -1.0645 -8.9575 45 1 9.3553 2.9759 -12.4206 46 1 7.5936 2.8090 -7.1657 47 1 6.5699 1.9238 -5.1102 48 1 3.7866 -2.5288 -2.4181 49 1 5.1629 -1.4029 -2.5424 50 1 3.9344 0.3055 -1.2735 51 1 3.9336 -1.2147 -0.3466 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846473706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = -127.341968 kcal Electronic energy + Delta-G solvation = -30007.144041 eV Core-core repulsion = 25870.482548 eV Total energy + Delta-G solvation = -4136.661493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.40387 -40.65569 -39.48526 -38.23684 -37.53712 -35.49948 -34.41044 -33.19407 -31.95904 -31.79058 -31.55985 -28.30438 -27.43605 -27.11840 -25.66038 -23.87216 -23.64083 -22.79733 -21.87929 -20.84653 -19.97993 -19.79109 -18.82226 -18.43823 -17.89203 -16.95623 -16.77108 -16.36763 -16.26268 -15.89858 -15.76886 -15.51408 -15.43786 -15.14879 -15.04998 -14.85702 -14.67407 -14.47427 -14.31027 -13.99940 -13.91911 -13.59191 -13.42638 -13.22793 -12.97812 -12.86758 -12.76285 -12.52679 -12.45793 -12.29660 -12.26739 -12.14734 -12.11287 -11.91812 -11.51797 -11.36348 -11.18428 -11.13632 -10.85219 -10.68609 -10.65257 -9.76838 -9.57204 -8.89837 -8.47757 -6.15901 0.61014 0.67106 1.33059 1.42760 1.51148 1.72629 2.10685 2.17231 2.82964 3.15252 3.32042 3.52084 3.67571 3.75540 3.86578 3.99311 4.03857 4.05330 4.13180 4.18131 4.22458 4.33846 4.45272 4.47794 4.48100 4.52535 4.59019 4.59825 4.66184 4.71514 4.79797 4.83770 4.87897 4.92568 4.98331 5.00266 5.07018 5.09912 5.13074 5.14762 5.24319 5.29147 5.30210 5.43537 5.55746 5.56711 5.68495 5.71239 5.77680 6.02434 6.22072 6.49047 6.96690 6.96760 7.30330 7.78044 8.75658 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.001804 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.648970 B =15520.076993 C =15981.652866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.058 0.942 4 C 0.076 3.924 5 O -0.598 6.598 6 C -0.072 4.072 7 C -0.122 4.122 8 C 0.108 3.892 9 N -0.613 5.613 10 C 0.508 3.492 11 O -0.585 6.585 12 C -0.076 4.076 13 C -0.144 4.144 14 C -0.058 4.058 15 C -0.206 4.206 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.244 4.244 27 C -0.061 4.061 28 C 0.100 3.900 29 C -0.132 4.132 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.113 0.887 45 H 0.273 0.727 46 H 0.117 0.883 47 H 0.135 0.865 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.057 0.943 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 -11.296 31.386 36.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.001 4.001 5 O -0.407 6.407 6 C -0.090 4.090 7 C -0.161 4.161 8 C -0.014 4.014 9 N -0.346 5.346 10 C 0.298 3.702 11 O -0.465 6.465 12 C -0.115 4.115 13 C -0.145 4.145 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.116 0.884 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.263 4.263 27 C -0.079 4.079 28 C -0.022 4.022 29 C -0.170 4.170 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.245 0.755 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.165 0.835 44 H 0.131 0.869 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.153 0.847 48 H 0.109 0.891 49 H 0.124 0.876 50 H 0.076 0.924 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.492 -10.753 30.023 35.028 hybrid contribution 0.365 0.751 -0.456 0.952 sum -14.126 -10.002 29.566 34.260 Atomic orbital electron populations 1.21802 0.94881 1.02116 1.01369 1.21105 0.96393 0.99582 0.93370 0.92393 1.22384 0.98972 0.94145 0.84598 1.86436 1.82047 1.54460 1.17715 1.21068 0.95484 1.00106 0.92389 1.21946 1.01631 0.98782 0.93696 1.21583 0.79903 1.01185 0.98743 1.48269 1.06822 1.61193 1.18340 1.21226 0.90429 0.76618 0.81929 1.90736 1.76234 1.45918 1.33580 1.20561 0.89258 1.05233 0.96453 1.19270 1.04814 0.93590 0.96869 1.20873 0.95561 1.00141 0.90980 1.20447 1.08419 0.92928 1.00698 1.19931 0.92382 0.94354 0.87177 1.83932 1.70287 1.25759 1.34048 1.21810 1.45839 0.80823 1.00575 0.88350 1.26614 0.96119 1.05994 0.93432 1.70188 1.44100 1.38393 1.03219 0.84577 0.79500 0.73521 0.78525 1.18419 1.19471 1.17996 1.21220 1.09572 1.00408 0.95117 1.20912 0.95346 0.95361 0.96328 1.22186 0.99770 0.97684 0.82529 1.22171 0.95110 1.01283 0.98455 0.93438 0.92544 0.91932 0.92480 0.91961 0.75541 0.89196 0.93290 0.89560 0.92181 0.89988 0.85119 0.85690 0.83519 0.86912 0.91831 0.86555 0.84685 0.89085 0.87638 0.92372 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.74 71.98 0.63 -0.95 16 2 C -0.09 -0.87 2.21 -10.80 -0.02 -0.89 16 3 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.08 0.57 6.21 71.98 0.45 1.01 16 5 O -0.60 -6.42 13.19 -148.98 -1.97 -8.38 16 6 C -0.07 -0.60 1.74 -10.77 -0.02 -0.62 16 7 C -0.12 -1.61 5.04 30.67 0.15 -1.45 16 8 C 0.11 1.87 6.43 86.36 0.56 2.43 16 9 N -0.61 -10.69 2.97 -818.07 -2.43 -13.11 16 10 C 0.51 13.09 7.69 87.66 0.67 13.77 16 11 O -0.59 -22.25 15.45 -3.03 -0.05 -22.29 16 12 C -0.08 -1.58 4.17 29.10 0.12 -1.46 16 13 C -0.14 -4.75 4.38 -19.83 -0.09 -4.83 16 14 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 15 C -0.21 -9.44 9.99 22.39 0.22 -9.22 16 16 C 0.11 5.96 6.65 22.58 0.15 6.11 16 17 O -0.23 -14.82 9.76 -22.66 -0.22 -15.04 16 18 C -0.41 -25.34 9.49 67.92 0.64 -24.70 16 19 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 21 N -0.92 -58.39 13.67 21.61 0.30 -58.09 16 22 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 C -0.24 -11.51 9.17 22.39 0.21 -11.30 16 27 C -0.06 -2.30 9.69 22.25 0.22 -2.09 16 28 C 0.10 0.81 6.37 86.51 0.55 1.36 16 29 C -0.13 -0.93 5.07 30.82 0.16 -0.77 16 30 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 31 H 0.06 0.62 6.40 -2.39 -0.02 0.61 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.29 6.14 -2.39 -0.01 0.28 16 35 H 0.40 0.77 9.12 -74.05 -0.68 0.10 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.98 6.36 -2.38 -0.02 0.96 16 39 H 0.06 1.46 7.01 -2.39 -0.02 1.44 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.13 1.80 7.87 -2.39 -0.02 1.78 16 42 H 0.13 1.86 7.65 -2.38 -0.02 1.84 16 43 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 44 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 47 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 48 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 49 H 0.11 0.55 5.93 -2.39 -0.01 0.54 16 50 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.10 0.26 6.25 -2.39 -0.01 0.24 16 Total: -1.00 -87.47 403.15 3.21 -84.26 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.27 Total: 22.44 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 5.28 Total: -36.44 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -2.13 Total: -71.20 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -2.23 Total: -45.72 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -87.47 3.21 -84.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846473706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.086 kcal (2) G-P(sol) polarization free energy of solvation -87.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds