Wall clock time and date at job start Wed Apr 1 2020 05:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47434 * 2 1 4 4 C 1.52992 * 109.47147 * 239.99110 * 2 1 3 5 5 O 1.42905 * 109.46992 * 65.00632 * 4 2 1 6 6 C 1.52999 * 109.46578 * 119.99212 * 2 1 3 7 7 C 1.53043 * 109.46332 * 300.00107 * 6 2 1 8 8 C 1.53196 * 109.31291 * 178.61669 * 7 6 2 9 9 N 1.46921 * 108.77729 * 54.63340 * 8 7 6 10 10 C 1.34780 * 120.63212 * 126.36984 * 9 8 7 11 11 O 1.21281 * 119.99489 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00186 * 180.02562 * 10 9 8 13 13 C 1.50694 * 109.47169 * 180.02562 * 12 10 9 14 14 C 1.38305 * 119.92826 * 269.72802 * 13 12 10 15 15 C 1.38104 * 120.06681 * 179.72605 * 14 13 12 16 16 C 1.38874 * 119.92812 * 0.56808 * 15 14 13 17 17 O 1.35752 * 120.06409 * 179.68308 * 16 15 14 18 18 C 1.34834 * 116.99978 * 174.48236 * 17 16 15 19 19 H 1.08002 * 119.99650 * 5.05714 * 18 17 16 20 20 C 1.38650 * 120.00511 * 185.05959 * 18 17 16 21 21 N 1.31557 * 119.99718 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00232 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47364 * 89.99709 * 22 20 18 24 24 H 1.48502 * 109.46807 * 209.99796 * 22 20 18 25 25 H 1.48502 * 109.46910 * 329.99302 * 22 20 18 26 26 C 1.38872 * 119.86680 * 359.70171 * 16 15 14 27 27 C 1.38101 * 119.93102 * 0.02562 * 26 16 15 28 28 C 1.46930 * 118.74022 * 306.64450 * 9 8 7 29 29 C 1.52763 * 109.00638 * 53.30885 * 28 9 8 30 30 H 1.09004 * 109.47664 * 300.00855 * 1 2 3 31 31 H 1.09007 * 109.46924 * 60.00442 * 1 2 3 32 32 H 1.08998 * 109.47922 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47180 * 185.00326 * 4 2 1 34 34 H 1.08998 * 109.47575 * 305.00335 * 4 2 1 35 35 H 0.96701 * 113.99207 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.46204 * 59.97527 * 6 2 1 37 37 H 1.08998 * 109.49933 * 58.66311 * 7 6 2 38 38 H 1.09001 * 109.49341 * 298.56464 * 7 6 2 39 39 H 1.08999 * 109.58294 * 294.84871 * 8 7 6 40 40 H 1.09000 * 109.58604 * 174.42322 * 8 7 6 41 41 H 1.09001 * 109.47229 * 59.99746 * 12 10 9 42 42 H 1.08997 * 109.46991 * 300.00033 * 12 10 9 43 43 H 1.08001 * 119.96809 * 359.97438 * 14 13 12 44 44 H 1.08002 * 120.03362 * 180.27062 * 15 14 13 45 45 H 0.97003 * 120.00122 * 179.97438 * 21 20 18 46 46 H 1.08003 * 120.03912 * 179.97438 * 26 16 15 47 47 H 1.07996 * 119.96947 * 180.02562 * 27 26 16 48 48 H 1.08996 * 109.58505 * 173.14119 * 28 9 8 49 49 H 1.09006 * 109.58572 * 293.56884 * 28 9 8 50 50 H 1.09000 * 109.56139 * 185.55729 * 29 28 9 51 51 H 1.08997 * 109.36158 * 65.49941 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 8 1.6620 0.0165 -2.4130 6 6 2.0398 -0.7211 1.2494 7 6 1.5295 0.0007 2.4987 8 6 2.0132 -0.7439 3.7471 9 7 3.4749 -0.8768 3.6818 10 6 4.2489 -0.4573 4.7024 11 8 3.7397 0.0350 5.6869 12 6 5.7469 -0.6000 4.6201 13 6 6.3728 -0.0598 5.8800 14 6 6.7404 1.2715 5.9519 15 6 7.3091 1.7709 7.1071 16 6 7.5226 0.9319 8.1930 17 8 8.0873 1.4184 9.3276 18 6 8.1616 0.5813 10.3819 19 1 7.8565 -0.4493 10.2757 20 6 8.6297 1.0434 11.6025 21 7 9.0018 2.2986 11.7318 22 14 8.7333 -0.1167 13.0630 23 1 10.0658 -0.7719 13.0812 24 1 8.5421 0.6513 14.3196 25 1 7.6743 -1.1515 12.9493 26 6 7.1576 -0.4057 8.1157 27 6 6.5841 -0.8978 6.9598 28 6 4.0774 -1.4701 2.4802 29 6 3.5703 -0.7225 1.2484 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 3.1263 -0.7997 -1.2054 34 1 1.6053 -1.7199 -1.2949 35 1 1.9533 -0.3833 -3.2439 36 1 1.6760 -1.7486 1.2496 37 1 0.4398 0.0218 2.4871 38 1 1.9135 1.0207 2.5118 39 1 1.5575 -1.7335 3.7818 40 1 1.7369 -0.1806 4.6385 41 1 6.1184 -0.0415 3.7610 42 1 6.0060 -1.6528 4.5087 43 1 6.5788 1.9223 5.1053 44 1 7.5919 2.8117 7.1642 45 1 9.3289 2.6220 12.5858 46 1 7.3227 -1.0608 8.9584 47 1 6.2997 -1.9379 6.8991 48 1 5.1627 -1.3858 2.5360 49 1 3.7935 -2.5202 2.4096 50 1 3.9330 -1.2161 0.3468 51 1 3.9350 0.3044 1.2734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846473707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:36 Heat of formation + Delta-G solvation = -102.302218 kcal Electronic energy + Delta-G solvation = -29978.442634 eV Core-core repulsion = 25842.866946 eV Total energy + Delta-G solvation = -4135.575688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.48761 -39.11963 -38.52817 -37.09080 -36.35859 -34.80763 -32.53766 -31.96593 -31.28795 -30.62636 -30.08898 -26.98979 -26.82711 -25.36922 -24.75382 -23.23122 -21.91712 -21.82832 -20.66152 -20.27589 -19.03218 -17.92906 -17.90080 -17.04080 -16.91716 -15.97757 -15.92095 -15.27923 -15.01775 -14.81314 -14.52385 -14.39620 -14.27224 -14.18282 -13.98200 -13.63397 -13.52089 -13.27871 -13.16858 -12.91953 -12.72397 -12.64602 -12.41557 -12.23178 -12.01487 -11.78639 -11.63338 -11.48469 -11.40248 -11.21827 -11.00152 -10.81703 -10.78576 -10.68830 -10.63750 -10.56036 -10.38871 -10.28337 -9.60605 -9.27095 -8.77120 -8.73589 -8.09234 -7.10498 -6.39775 -3.98283 2.30230 2.31494 2.78012 2.98041 3.16111 3.17623 3.22217 3.69097 4.01296 4.19569 4.28244 4.47333 4.50318 4.58059 4.75432 4.81213 4.88854 4.93225 4.98622 5.06570 5.10124 5.13055 5.14553 5.27294 5.28870 5.32631 5.37328 5.40015 5.45604 5.49991 5.52004 5.63661 5.68113 5.71062 5.77334 5.78561 5.82414 5.90297 5.95043 6.05977 6.27152 6.43478 6.47520 6.75978 6.97178 7.10957 7.15759 7.29349 7.37176 7.42824 7.50603 7.89763 8.05611 8.32641 9.06002 9.76965 10.78433 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.030166 B = 0.001714 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.989052 B =16329.720473 C =16520.073758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.078 0.922 4 C 0.077 3.923 5 O -0.574 6.574 6 C -0.080 4.080 7 C -0.129 4.129 8 C 0.111 3.889 9 N -0.622 5.622 10 C 0.512 3.488 11 O -0.520 6.520 12 C -0.078 4.078 13 C -0.170 4.170 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.232 4.232 27 C -0.057 4.057 28 C 0.108 3.892 29 C -0.136 4.136 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.378 0.622 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 -9.967 -26.956 31.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.001 4.001 5 O -0.379 6.379 6 C -0.098 4.098 7 C -0.167 4.167 8 C -0.012 4.012 9 N -0.358 5.358 10 C 0.301 3.699 11 O -0.394 6.394 12 C -0.118 4.118 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.210 4.210 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.251 4.251 27 C -0.075 4.075 28 C -0.015 4.015 29 C -0.174 4.174 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.225 0.775 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 48 H 0.107 0.893 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.737 -8.927 -25.674 30.455 hybrid contribution 0.246 -1.095 0.196 1.139 sum -13.491 -10.022 -25.477 30.521 Atomic orbital electron populations 1.21825 0.94573 1.01739 1.02161 1.21144 0.96640 1.00390 0.92360 0.90403 1.22344 0.98196 0.94048 0.85492 1.86481 1.81578 1.53429 1.16438 1.21126 0.95089 0.99775 0.93832 1.22016 1.01123 0.99942 0.93654 1.21527 0.80076 1.00394 0.99154 1.48206 1.06631 1.63010 1.17968 1.21063 0.89777 0.77084 0.82007 1.90736 1.75136 1.42595 1.30910 1.20432 0.90541 1.02506 0.98323 1.18649 1.08478 0.94645 0.95312 1.20393 0.97033 0.93970 0.96417 1.20152 1.08483 0.99352 0.93049 1.19373 0.90502 0.91765 0.88080 1.83977 1.66935 1.40037 1.17284 1.21326 1.45116 0.93069 0.87175 0.89104 1.25281 0.96507 0.96819 0.97952 1.70043 1.40052 1.14145 1.25640 0.85717 0.78927 0.79143 0.79671 1.19921 1.20277 1.19217 1.21101 1.08513 0.96071 0.99457 1.20499 0.96641 0.97923 0.92446 1.21621 0.98839 0.96846 0.84196 1.22030 0.95653 1.01901 0.97840 0.92278 0.92080 0.92950 0.93248 0.93787 0.77534 0.90811 0.90401 0.91311 0.91927 0.88887 0.89103 0.89138 0.87462 0.86561 0.92091 0.85601 0.87883 0.89338 0.91539 0.90542 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.74 37.16 0.32 -0.59 16 2 C -0.09 -0.54 2.21 -90.63 -0.20 -0.74 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.08 0.41 6.21 37.15 0.23 0.64 16 5 O -0.57 -3.70 13.20 -35.23 -0.46 -4.17 16 6 C -0.08 -0.47 1.74 -90.58 -0.16 -0.62 16 7 C -0.13 -0.96 5.05 -26.61 -0.13 -1.09 16 8 C 0.11 1.07 6.43 -3.71 -0.02 1.04 16 9 N -0.62 -6.51 2.98 -173.03 -0.52 -7.02 16 10 C 0.51 7.36 7.69 -10.99 -0.08 7.28 16 11 O -0.52 -10.08 15.45 5.56 0.09 -10.00 16 12 C -0.08 -1.01 4.18 -29.04 -0.12 -1.13 16 13 C -0.17 -3.03 4.38 -104.58 -0.46 -3.49 16 14 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 15 C -0.19 -4.27 9.99 -39.40 -0.39 -4.67 16 16 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 17 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 18 C -0.39 -11.25 9.49 30.88 0.29 -10.96 16 19 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 22 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 28 C 0.11 0.73 6.31 -3.93 -0.02 0.71 16 29 C -0.14 -0.77 5.04 -26.83 -0.14 -0.91 16 30 H 0.06 0.36 6.40 -51.93 -0.33 0.03 16 31 H 0.06 0.45 7.82 -51.92 -0.41 0.04 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.22 6.14 -51.93 -0.32 -0.10 16 34 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.38 0.81 9.12 45.56 0.42 1.23 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.50 6.36 -51.93 -0.33 0.17 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 41 H 0.09 0.95 7.62 -51.93 -0.40 0.55 16 42 H 0.09 0.95 7.89 -51.93 -0.41 0.54 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 44 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 47 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 48 H 0.09 0.52 5.93 -51.93 -0.31 0.22 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.31 6.25 -51.93 -0.32 -0.02 16 51 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -36.08 403.08 -8.58 -44.66 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.13 Total: 3.39 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.37 Total: -18.54 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.24 Total: -32.16 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.38 Total: -19.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.08 -8.58 -44.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846473707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.643 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds