Wall clock time and date at job start Wed Apr 1 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47434 * 2 1 4 4 C 1.52992 * 109.47147 * 239.99110 * 2 1 3 5 5 O 1.42905 * 109.46992 * 65.00632 * 4 2 1 6 6 C 1.52999 * 109.46578 * 119.99212 * 2 1 3 7 7 C 1.53043 * 109.46332 * 300.00107 * 6 2 1 8 8 C 1.53196 * 109.31291 * 178.61669 * 7 6 2 9 9 N 1.46921 * 108.77729 * 54.63340 * 8 7 6 10 10 C 1.34780 * 120.63212 * 126.36984 * 9 8 7 11 11 O 1.21281 * 119.99489 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00186 * 180.02562 * 10 9 8 13 13 C 1.50694 * 109.47169 * 180.02562 * 12 10 9 14 14 C 1.38305 * 119.92826 * 269.72802 * 13 12 10 15 15 C 1.38104 * 120.06681 * 179.72605 * 14 13 12 16 16 C 1.38874 * 119.92812 * 0.56808 * 15 14 13 17 17 O 1.35752 * 120.06409 * 179.68308 * 16 15 14 18 18 C 1.34834 * 116.99978 * 174.48236 * 17 16 15 19 19 H 1.08002 * 119.99650 * 5.05714 * 18 17 16 20 20 C 1.38650 * 120.00511 * 185.05959 * 18 17 16 21 21 N 1.31557 * 119.99718 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00232 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47364 * 89.99709 * 22 20 18 24 24 H 1.48502 * 109.46807 * 209.99796 * 22 20 18 25 25 H 1.48502 * 109.46910 * 329.99302 * 22 20 18 26 26 C 1.38872 * 119.86680 * 359.70171 * 16 15 14 27 27 C 1.38101 * 119.93102 * 0.02562 * 26 16 15 28 28 C 1.46930 * 118.74022 * 306.64450 * 9 8 7 29 29 C 1.52763 * 109.00638 * 53.30885 * 28 9 8 30 30 H 1.09004 * 109.47664 * 300.00855 * 1 2 3 31 31 H 1.09007 * 109.46924 * 60.00442 * 1 2 3 32 32 H 1.08998 * 109.47922 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47180 * 185.00326 * 4 2 1 34 34 H 1.08998 * 109.47575 * 305.00335 * 4 2 1 35 35 H 0.96701 * 113.99207 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.46204 * 59.97527 * 6 2 1 37 37 H 1.08998 * 109.49933 * 58.66311 * 7 6 2 38 38 H 1.09001 * 109.49341 * 298.56464 * 7 6 2 39 39 H 1.08999 * 109.58294 * 294.84871 * 8 7 6 40 40 H 1.09000 * 109.58604 * 174.42322 * 8 7 6 41 41 H 1.09001 * 109.47229 * 59.99746 * 12 10 9 42 42 H 1.08997 * 109.46991 * 300.00033 * 12 10 9 43 43 H 1.08001 * 119.96809 * 359.97438 * 14 13 12 44 44 H 1.08002 * 120.03362 * 180.27062 * 15 14 13 45 45 H 0.97003 * 120.00122 * 179.97438 * 21 20 18 46 46 H 1.08003 * 120.03912 * 179.97438 * 26 16 15 47 47 H 1.07996 * 119.96947 * 180.02562 * 27 26 16 48 48 H 1.08996 * 109.58505 * 173.14119 * 28 9 8 49 49 H 1.09006 * 109.58572 * 293.56884 * 28 9 8 50 50 H 1.09000 * 109.56139 * 185.55729 * 29 28 9 51 51 H 1.08997 * 109.36158 * 65.49941 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 8 1.6620 0.0165 -2.4130 6 6 2.0398 -0.7211 1.2494 7 6 1.5295 0.0007 2.4987 8 6 2.0132 -0.7439 3.7471 9 7 3.4749 -0.8768 3.6818 10 6 4.2489 -0.4573 4.7024 11 8 3.7397 0.0350 5.6869 12 6 5.7469 -0.6000 4.6201 13 6 6.3728 -0.0598 5.8800 14 6 6.7404 1.2715 5.9519 15 6 7.3091 1.7709 7.1071 16 6 7.5226 0.9319 8.1930 17 8 8.0873 1.4184 9.3276 18 6 8.1616 0.5813 10.3819 19 1 7.8565 -0.4493 10.2757 20 6 8.6297 1.0434 11.6025 21 7 9.0018 2.2986 11.7318 22 14 8.7333 -0.1167 13.0630 23 1 10.0658 -0.7719 13.0812 24 1 8.5421 0.6513 14.3196 25 1 7.6743 -1.1515 12.9493 26 6 7.1576 -0.4057 8.1157 27 6 6.5841 -0.8978 6.9598 28 6 4.0774 -1.4701 2.4802 29 6 3.5703 -0.7225 1.2484 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 3.1263 -0.7997 -1.2054 34 1 1.6053 -1.7199 -1.2949 35 1 1.9533 -0.3833 -3.2439 36 1 1.6760 -1.7486 1.2496 37 1 0.4398 0.0218 2.4871 38 1 1.9135 1.0207 2.5118 39 1 1.5575 -1.7335 3.7818 40 1 1.7369 -0.1806 4.6385 41 1 6.1184 -0.0415 3.7610 42 1 6.0060 -1.6528 4.5087 43 1 6.5788 1.9223 5.1053 44 1 7.5919 2.8117 7.1642 45 1 9.3289 2.6220 12.5858 46 1 7.3227 -1.0608 8.9584 47 1 6.2997 -1.9379 6.8991 48 1 5.1627 -1.3858 2.5360 49 1 3.7935 -2.5202 2.4096 50 1 3.9330 -1.2161 0.3468 51 1 3.9350 0.3044 1.2734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846473707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:35 Heat of formation + Delta-G solvation = -127.409061 kcal Electronic energy + Delta-G solvation = -29979.531348 eV Core-core repulsion = 25842.866946 eV Total energy + Delta-G solvation = -4136.664403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.41255 -40.65909 -39.49100 -38.23612 -37.54346 -35.49773 -34.40848 -33.19750 -32.00720 -31.78946 -31.56255 -28.30373 -27.43932 -27.11809 -25.66505 -23.86250 -23.63955 -22.79465 -21.88126 -20.85322 -19.94517 -19.81057 -18.82739 -18.43899 -17.89314 -16.95453 -16.76115 -16.35133 -16.27298 -15.93020 -15.73453 -15.51540 -15.44601 -15.23756 -14.96609 -14.85526 -14.69964 -14.44093 -14.27989 -14.13336 -13.83496 -13.59478 -13.42569 -13.24702 -12.97991 -12.88582 -12.73487 -12.52430 -12.45486 -12.32768 -12.24151 -12.14188 -12.10022 -11.91695 -11.51587 -11.35847 -11.18160 -11.13536 -10.85060 -10.68487 -10.65225 -9.76851 -9.57565 -8.89861 -8.47451 -6.15751 0.60972 0.67158 1.33485 1.43294 1.51719 1.72534 2.10442 2.17628 2.83184 3.15382 3.32205 3.52043 3.67759 3.75274 3.86713 3.99341 4.04344 4.05785 4.12970 4.18531 4.22484 4.33876 4.45785 4.47982 4.48351 4.52603 4.59243 4.59892 4.65983 4.71997 4.79458 4.84200 4.88007 4.92643 4.98652 5.00512 5.07036 5.10024 5.13514 5.14586 5.24313 5.29198 5.30453 5.43640 5.55719 5.56765 5.68551 5.71322 5.77647 6.02617 6.22054 6.48939 6.96858 6.96961 7.30216 7.78293 8.76024 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.030166 B = 0.001714 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.989052 B =16329.720473 C =16520.073758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.058 0.942 4 C 0.076 3.924 5 O -0.598 6.598 6 C -0.072 4.072 7 C -0.123 4.123 8 C 0.108 3.892 9 N -0.612 5.612 10 C 0.508 3.492 11 O -0.585 6.585 12 C -0.076 4.076 13 C -0.144 4.144 14 C -0.059 4.059 15 C -0.206 4.206 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.244 4.244 27 C -0.060 4.060 28 C 0.100 3.900 29 C -0.133 4.133 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.144 0.856 44 H 0.111 0.889 45 H 0.273 0.727 46 H 0.118 0.882 47 H 0.138 0.862 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 -13.396 -30.409 36.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.001 4.001 5 O -0.406 6.406 6 C -0.091 4.091 7 C -0.161 4.161 8 C -0.014 4.014 9 N -0.346 5.346 10 C 0.298 3.702 11 O -0.465 6.465 12 C -0.115 4.115 13 C -0.145 4.145 14 C -0.077 4.077 15 C -0.226 4.226 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.263 4.263 27 C -0.078 4.078 28 C -0.022 4.022 29 C -0.171 4.171 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.245 0.755 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.124 0.876 49 H 0.107 0.893 50 H 0.121 0.879 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.597 -12.404 -29.255 34.968 hybrid contribution 0.305 -0.078 0.837 0.894 sum -14.292 -12.482 -28.418 34.171 Atomic orbital electron populations 1.21804 0.94898 1.02095 1.01378 1.21103 0.96378 0.99612 0.93344 0.92319 1.22383 0.98986 0.94133 0.84600 1.86438 1.82050 1.54450 1.17711 1.21066 0.95488 1.00084 0.92417 1.21949 1.01641 0.98818 0.93658 1.21585 0.79913 1.01155 0.98782 1.48265 1.06795 1.61417 1.18124 1.21226 0.90428 0.76583 0.81947 1.90736 1.76222 1.45902 1.33594 1.20560 0.89257 1.05158 0.96523 1.19269 1.04812 0.93787 0.96679 1.20856 0.95426 0.95291 0.96092 1.20433 1.09131 0.99230 0.93763 1.19923 0.92387 0.93544 0.87982 1.83938 1.69979 1.41411 1.18743 1.21828 1.45691 0.93691 0.87882 0.88259 1.26623 0.95736 0.98824 1.00978 1.70192 1.42427 1.16637 1.26712 0.84571 0.79694 0.76794 0.75015 1.18423 1.19522 1.17906 1.21231 1.09119 0.95097 1.00832 1.20926 0.95441 0.99989 0.91460 1.21998 0.99756 0.97864 0.82551 1.22028 0.95131 1.01440 0.98462 0.92530 0.93430 0.91974 0.91931 0.92521 0.75548 0.89274 0.89564 0.93195 0.90068 0.92142 0.85439 0.85360 0.83810 0.87041 0.91844 0.86432 0.84385 0.87631 0.89252 0.87935 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.74 71.98 0.63 -0.94 16 2 C -0.09 -0.86 2.21 -10.80 -0.02 -0.88 16 3 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.08 0.56 6.21 71.98 0.45 1.01 16 5 O -0.60 -6.35 13.20 -148.98 -1.97 -8.32 16 6 C -0.07 -0.60 1.74 -10.76 -0.02 -0.61 16 7 C -0.12 -1.59 5.05 30.67 0.15 -1.44 16 8 C 0.11 1.87 6.43 86.36 0.56 2.43 16 9 N -0.61 -10.70 2.98 -819.72 -2.44 -13.14 16 10 C 0.51 13.10 7.69 87.66 0.67 13.77 16 11 O -0.59 -22.24 15.45 -3.03 -0.05 -22.28 16 12 C -0.08 -1.58 4.18 29.10 0.12 -1.46 16 13 C -0.14 -4.75 4.38 -19.83 -0.09 -4.84 16 14 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 15 C -0.21 -9.53 9.99 22.39 0.22 -9.31 16 16 C 0.11 5.97 6.65 22.57 0.15 6.12 16 17 O -0.23 -14.86 9.76 -22.81 -0.22 -15.08 16 18 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 19 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 21 N -0.92 -58.44 13.67 21.61 0.30 -58.15 16 22 Si 1.02 44.48 29.55 68.60 2.03 46.50 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 27 C -0.06 -2.23 9.69 22.25 0.22 -2.02 16 28 C 0.10 0.82 6.31 86.22 0.54 1.36 16 29 C -0.13 -0.91 5.04 30.53 0.15 -0.76 16 30 H 0.06 0.62 6.40 -2.39 -0.02 0.60 16 31 H 0.05 0.65 7.82 -2.38 -0.02 0.63 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.28 6.14 -2.39 -0.01 0.27 16 34 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.40 0.74 9.12 -74.06 -0.68 0.07 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.97 6.36 -2.39 -0.02 0.96 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.47 7.00 -2.39 -0.02 1.45 16 41 H 0.13 1.83 7.62 -2.39 -0.02 1.82 16 42 H 0.13 1.83 7.89 -2.39 -0.02 1.81 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 47 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 48 H 0.11 0.55 5.93 -2.39 -0.01 0.54 16 49 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 50 H 0.10 0.24 6.25 -2.39 -0.01 0.23 16 51 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -87.43 403.08 3.19 -84.24 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.27 Total: 22.58 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 5.27 Total: -36.36 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -2.15 Total: -71.29 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -2.24 Total: -45.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -87.43 3.19 -84.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846473707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.168 kcal (2) G-P(sol) polarization free energy of solvation -87.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds