Wall clock time and date at job start Wed Apr 1 2020 05:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46865 * 2 1 4 4 C 1.53003 * 109.47128 * 120.00033 * 2 1 3 5 5 O 1.42900 * 109.46971 * 295.00198 * 4 2 1 6 6 C 1.53001 * 109.47364 * 240.00028 * 2 1 3 7 7 C 1.53036 * 109.45853 * 179.97438 * 6 2 1 8 8 C 1.53196 * 109.31273 * 178.62700 * 7 6 2 9 9 N 1.46928 * 108.77162 * 54.63962 * 8 7 6 10 10 C 1.34774 * 120.63015 * 126.37051 * 9 8 7 11 11 O 1.21280 * 119.99854 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99925 * 179.97438 * 10 9 8 13 13 C 1.50698 * 109.47293 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96972 * 89.99434 * 13 12 10 15 15 C 1.38275 * 120.13835 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06977 * 0.28020 * 15 14 13 17 17 C 1.38853 * 119.93133 * 359.45069 * 16 15 14 18 18 O 1.35749 * 120.07112 * 180.27775 * 17 16 15 19 19 C 1.34833 * 116.99801 * 354.75701 * 18 17 16 20 20 H 1.07999 * 120.00283 * 5.08278 * 19 18 17 21 21 C 1.38658 * 119.99720 * 185.08053 * 19 18 17 22 22 N 1.31553 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47203 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46960 * 120.00053 * 23 21 19 26 26 H 1.48502 * 109.47100 * 240.00181 * 23 21 19 27 27 C 1.38080 * 119.96292 * 270.02113 * 13 12 10 28 28 C 1.46930 * 118.73683 * 306.64223 * 9 8 7 29 29 C 1.52761 * 109.00819 * 53.31173 * 28 9 8 30 30 H 1.08995 * 109.46938 * 300.00078 * 1 2 3 31 31 H 1.08993 * 109.46828 * 60.00106 * 1 2 3 32 32 H 1.08995 * 109.46658 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46958 * 55.00026 * 4 2 1 34 34 H 1.09004 * 109.47034 * 175.00386 * 4 2 1 35 35 H 0.96699 * 113.99811 * 179.97438 * 5 4 2 36 36 H 1.08990 * 109.46024 * 299.97100 * 6 2 1 37 37 H 1.09007 * 109.50009 * 58.67870 * 7 6 2 38 38 H 1.08993 * 109.50280 * 298.57972 * 7 6 2 39 39 H 1.09002 * 109.58812 * 294.85509 * 8 7 6 40 40 H 1.08993 * 109.70850 * 174.49464 * 8 7 6 41 41 H 1.09001 * 109.47395 * 59.99674 * 12 10 9 42 42 H 1.08998 * 109.47262 * 299.99770 * 12 10 9 43 43 H 1.08001 * 119.92799 * 0.02562 * 14 13 12 44 44 H 1.08000 * 119.96093 * 180.02562 * 15 14 13 45 45 H 1.07996 * 120.03245 * 179.70156 * 16 15 14 46 46 H 0.96999 * 119.99776 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03814 * 359.95608 * 27 13 12 48 48 H 1.09001 * 109.58047 * 173.14351 * 28 9 8 49 49 H 1.08997 * 109.58882 * 293.56999 * 28 9 8 50 50 H 1.08997 * 109.56515 * 185.54836 * 29 28 9 51 51 H 1.08998 * 109.35795 * 65.49592 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 8 1.6620 0.0167 2.4131 6 6 2.0401 -0.7212 -1.2492 7 6 3.5705 -0.7205 -1.2492 8 6 4.0775 -1.4731 -2.4835 9 7 3.4739 -0.8758 -3.6825 10 6 4.2466 -0.4557 -4.7037 11 8 5.4523 -0.5685 -4.6380 12 6 3.6123 0.1543 -5.9271 13 6 4.6866 0.5365 -6.9123 14 6 5.1046 -0.3736 -7.8665 15 6 6.0905 -0.0268 -8.7719 16 6 6.6652 1.2282 -8.7224 17 6 6.2438 2.1460 -7.7694 18 8 6.8027 3.3822 -7.7218 19 6 7.8357 3.6195 -8.5553 20 1 8.1297 2.8720 -9.2773 21 6 8.5205 4.8231 -8.4854 22 7 8.1627 5.7334 -7.6056 23 14 9.9520 5.1515 -9.6396 24 1 10.1520 3.9776 -10.5268 25 1 9.6575 6.3505 -10.4649 26 1 11.1842 5.3878 -8.8452 27 6 5.2531 1.7947 -6.8613 28 6 2.0122 -0.7398 -3.7445 29 6 1.5280 -0.0005 -2.4984 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7994 1.2056 35 1 1.9525 -0.3833 3.2441 36 1 1.6772 -1.7489 -1.2488 37 1 3.9346 -1.2133 -0.3476 38 1 3.9338 0.3068 -1.2748 39 1 3.7916 -2.5227 -2.4146 40 1 5.1629 -1.3932 -2.5425 41 1 3.0494 1.0425 -5.6400 42 1 2.9393 -0.5695 -6.3866 43 1 4.6600 -1.3571 -7.9043 44 1 6.4144 -0.7395 -9.5159 45 1 7.4385 1.4968 -9.4267 46 1 8.6420 6.5752 -7.5566 47 1 4.9262 2.5050 -6.1164 48 1 1.7354 -0.1740 -4.6340 49 1 1.5544 -1.7283 -3.7805 50 1 0.4383 0.0191 -2.4860 51 1 1.9106 1.0200 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846476459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:40 Heat of formation + Delta-G solvation = -101.887021 kcal Electronic energy + Delta-G solvation = -30222.520957 eV Core-core repulsion = 26086.963273 eV Total energy + Delta-G solvation = -4135.557684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.46559 -39.10792 -38.48758 -37.03719 -36.33480 -34.74381 -32.57292 -32.15880 -31.27869 -30.89318 -29.13313 -27.43650 -26.64125 -25.32151 -24.98186 -23.20072 -21.92866 -21.50761 -20.77789 -20.26164 -19.10027 -17.84625 -17.55876 -17.02258 -16.87800 -15.93169 -15.79377 -15.32981 -14.94451 -14.92961 -14.68181 -14.37306 -14.31882 -14.24290 -13.82226 -13.64979 -13.51881 -13.23110 -13.20226 -12.86870 -12.65394 -12.45618 -12.31728 -12.22815 -11.93832 -11.78792 -11.56512 -11.44201 -11.42454 -11.22733 -10.95033 -10.79895 -10.71725 -10.68204 -10.58868 -10.53490 -10.37629 -10.23062 -9.62166 -9.26697 -8.78026 -8.70889 -7.99370 -7.14782 -6.38190 -3.96978 2.15585 2.45898 2.78750 2.99659 3.16659 3.18352 3.23595 3.75217 4.02047 4.28237 4.33578 4.48121 4.57816 4.64586 4.77652 4.84180 4.90497 4.98915 5.01899 5.05312 5.11429 5.15294 5.18722 5.23133 5.30230 5.37906 5.39293 5.50531 5.52979 5.54586 5.59435 5.70373 5.72004 5.76504 5.79252 5.83004 5.85450 5.99419 6.00581 6.12593 6.24359 6.40384 6.45864 6.72807 6.98574 7.14192 7.22841 7.33655 7.36915 7.43899 7.50956 7.89785 8.07229 8.32569 9.07816 9.79203 10.80319 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002040 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.767441 B =13722.373955 C =14773.532360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.078 0.922 4 C 0.076 3.924 5 O -0.574 6.574 6 C -0.079 4.079 7 C -0.134 4.134 8 C 0.112 3.888 9 N -0.621 5.621 10 C 0.517 3.483 11 O -0.518 6.518 12 C -0.092 4.092 13 C -0.033 4.033 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.174 4.174 28 C 0.108 3.892 29 C -0.133 4.133 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.378 0.622 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.268 0.732 47 H 0.113 0.887 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.518 -15.876 14.245 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.001 4.001 5 O -0.379 6.379 6 C -0.098 4.098 7 C -0.173 4.173 8 C -0.010 4.010 9 N -0.357 5.357 10 C 0.305 3.695 11 O -0.392 6.392 12 C -0.132 4.132 13 C -0.034 4.034 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 C -0.015 4.015 29 C -0.171 4.171 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.225 0.775 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.131 0.869 48 H 0.107 0.893 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.077 -15.103 14.005 26.129 hybrid contribution 0.959 -0.288 -0.091 1.005 sum -15.118 -15.391 13.914 25.672 Atomic orbital electron populations 1.21820 0.94573 1.01662 1.02161 1.21151 0.96570 1.00487 0.92378 0.90319 1.22344 0.98287 0.93982 0.85504 1.86476 1.81579 1.53427 1.16427 1.21115 0.95246 0.99646 0.93752 1.22087 0.95256 1.02020 0.97887 1.21515 1.00051 0.95902 0.83556 1.48159 1.06762 1.62785 1.17976 1.20768 0.87236 0.77569 0.83899 1.90749 1.14267 1.54203 1.80029 1.20620 0.97923 1.01781 0.92881 1.18681 0.96201 0.93495 0.94993 1.20339 1.02805 0.98665 0.99720 1.20674 0.95520 0.95523 0.97607 1.21170 1.05583 0.95045 1.03218 1.19271 0.92144 0.85782 0.92686 1.83976 1.43610 1.24202 1.56633 1.21365 1.08003 1.02743 1.14470 0.89081 1.25277 0.98635 0.94927 0.97776 1.70051 1.39805 1.06723 1.33435 0.85655 0.79863 0.78768 0.79173 1.19129 1.20214 1.20189 1.19935 1.01099 0.96834 1.01436 1.21647 0.80067 1.00733 0.99097 1.21972 1.01208 1.00179 0.93760 0.92086 0.92269 0.92994 0.93825 0.93226 0.77549 0.90843 0.90729 0.91081 0.91929 0.88884 0.88361 0.88500 0.87995 0.87500 0.85626 0.92183 0.86903 0.89299 0.91467 0.90142 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.74 37.16 0.32 -0.63 16 2 C -0.09 -0.62 2.21 -90.61 -0.20 -0.82 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 C 0.08 0.50 6.21 37.16 0.23 0.73 16 5 O -0.57 -4.30 13.19 -35.23 -0.46 -4.76 16 6 C -0.08 -0.52 1.74 -90.58 -0.16 -0.68 16 7 C -0.13 -1.08 5.05 -26.61 -0.13 -1.22 16 8 C 0.11 1.13 6.44 -3.71 -0.02 1.10 16 9 N -0.62 -6.90 2.98 -173.03 -0.52 -7.41 16 10 C 0.52 7.84 7.69 -10.99 -0.08 7.75 16 11 O -0.52 -10.44 15.45 5.56 0.09 -10.35 16 12 C -0.09 -1.27 4.18 -29.04 -0.12 -1.40 16 13 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 14 C -0.20 -3.64 9.70 -39.53 -0.38 -4.02 16 15 C -0.07 -1.48 10.04 -39.61 -0.40 -1.87 16 16 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 17 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 18 O -0.18 -5.36 9.76 0.04 0.00 -5.36 16 19 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 20 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -26.08 13.67 55.48 0.76 -25.32 16 23 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.17 -3.90 9.65 -39.39 -0.38 -4.28 16 28 C 0.11 0.81 6.31 -3.93 -0.02 0.78 16 29 C -0.13 -0.90 5.03 -26.83 -0.13 -1.03 16 30 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 31 H 0.06 0.35 6.40 -51.93 -0.33 0.02 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.30 6.15 -51.93 -0.32 -0.02 16 35 H 0.38 1.20 9.12 45.56 0.42 1.62 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.50 6.25 -51.93 -0.32 0.17 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 41 H 0.10 1.17 7.62 -51.93 -0.40 0.78 16 42 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 43 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 48 H 0.09 0.59 5.93 -51.93 -0.31 0.28 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.42 6.36 -51.93 -0.33 0.09 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -36.48 403.08 -8.58 -45.06 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.13 Total: 4.61 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.37 Total: -18.69 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.24 Total: -32.73 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.38 Total: -20.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.48 -8.58 -45.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846476459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.826 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds