Wall clock time and date at job start Wed Apr 1 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46865 * 2 1 4 4 C 1.53003 * 109.47128 * 120.00033 * 2 1 3 5 5 O 1.42900 * 109.46971 * 295.00198 * 4 2 1 6 6 C 1.53001 * 109.47364 * 240.00028 * 2 1 3 7 7 C 1.53036 * 109.45853 * 179.97438 * 6 2 1 8 8 C 1.53196 * 109.31273 * 178.62700 * 7 6 2 9 9 N 1.46928 * 108.77162 * 54.63962 * 8 7 6 10 10 C 1.34774 * 120.63015 * 126.37051 * 9 8 7 11 11 O 1.21280 * 119.99854 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99925 * 179.97438 * 10 9 8 13 13 C 1.50698 * 109.47293 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96972 * 89.99434 * 13 12 10 15 15 C 1.38275 * 120.13835 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06977 * 0.28020 * 15 14 13 17 17 C 1.38853 * 119.93133 * 359.45069 * 16 15 14 18 18 O 1.35749 * 120.07112 * 180.27775 * 17 16 15 19 19 C 1.34833 * 116.99801 * 354.75701 * 18 17 16 20 20 H 1.07999 * 120.00283 * 5.08278 * 19 18 17 21 21 C 1.38658 * 119.99720 * 185.08053 * 19 18 17 22 22 N 1.31553 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47203 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46960 * 120.00053 * 23 21 19 26 26 H 1.48502 * 109.47100 * 240.00181 * 23 21 19 27 27 C 1.38080 * 119.96292 * 270.02113 * 13 12 10 28 28 C 1.46930 * 118.73683 * 306.64223 * 9 8 7 29 29 C 1.52761 * 109.00819 * 53.31173 * 28 9 8 30 30 H 1.08995 * 109.46938 * 300.00078 * 1 2 3 31 31 H 1.08993 * 109.46828 * 60.00106 * 1 2 3 32 32 H 1.08995 * 109.46658 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46958 * 55.00026 * 4 2 1 34 34 H 1.09004 * 109.47034 * 175.00386 * 4 2 1 35 35 H 0.96699 * 113.99811 * 179.97438 * 5 4 2 36 36 H 1.08990 * 109.46024 * 299.97100 * 6 2 1 37 37 H 1.09007 * 109.50009 * 58.67870 * 7 6 2 38 38 H 1.08993 * 109.50280 * 298.57972 * 7 6 2 39 39 H 1.09002 * 109.58812 * 294.85509 * 8 7 6 40 40 H 1.08993 * 109.70850 * 174.49464 * 8 7 6 41 41 H 1.09001 * 109.47395 * 59.99674 * 12 10 9 42 42 H 1.08998 * 109.47262 * 299.99770 * 12 10 9 43 43 H 1.08001 * 119.92799 * 0.02562 * 14 13 12 44 44 H 1.08000 * 119.96093 * 180.02562 * 15 14 13 45 45 H 1.07996 * 120.03245 * 179.70156 * 16 15 14 46 46 H 0.96999 * 119.99776 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03814 * 359.95608 * 27 13 12 48 48 H 1.09001 * 109.58047 * 173.14351 * 28 9 8 49 49 H 1.08997 * 109.58882 * 293.56999 * 28 9 8 50 50 H 1.08997 * 109.56515 * 185.54836 * 29 28 9 51 51 H 1.08998 * 109.35795 * 65.49592 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 8 1.6620 0.0167 2.4131 6 6 2.0401 -0.7212 -1.2492 7 6 3.5705 -0.7205 -1.2492 8 6 4.0775 -1.4731 -2.4835 9 7 3.4739 -0.8758 -3.6825 10 6 4.2466 -0.4557 -4.7037 11 8 5.4523 -0.5685 -4.6380 12 6 3.6123 0.1543 -5.9271 13 6 4.6866 0.5365 -6.9123 14 6 5.1046 -0.3736 -7.8665 15 6 6.0905 -0.0268 -8.7719 16 6 6.6652 1.2282 -8.7224 17 6 6.2438 2.1460 -7.7694 18 8 6.8027 3.3822 -7.7218 19 6 7.8357 3.6195 -8.5553 20 1 8.1297 2.8720 -9.2773 21 6 8.5205 4.8231 -8.4854 22 7 8.1627 5.7334 -7.6056 23 14 9.9520 5.1515 -9.6396 24 1 10.1520 3.9776 -10.5268 25 1 9.6575 6.3505 -10.4649 26 1 11.1842 5.3878 -8.8452 27 6 5.2531 1.7947 -6.8613 28 6 2.0122 -0.7398 -3.7445 29 6 1.5280 -0.0005 -2.4984 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7994 1.2056 35 1 1.9525 -0.3833 3.2441 36 1 1.6772 -1.7489 -1.2488 37 1 3.9346 -1.2133 -0.3476 38 1 3.9338 0.3068 -1.2748 39 1 3.7916 -2.5227 -2.4146 40 1 5.1629 -1.3932 -2.5425 41 1 3.0494 1.0425 -5.6400 42 1 2.9393 -0.5695 -6.3866 43 1 4.6600 -1.3571 -7.9043 44 1 6.4144 -0.7395 -9.5159 45 1 7.4385 1.4968 -9.4267 46 1 8.6420 6.5752 -7.5566 47 1 4.9262 2.5050 -6.1164 48 1 1.7354 -0.1740 -4.6340 49 1 1.5544 -1.7283 -3.7805 50 1 0.4383 0.0191 -2.4860 51 1 1.9106 1.0200 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846476459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:39 Heat of formation + Delta-G solvation = -127.441380 kcal Electronic energy + Delta-G solvation = -30223.629077 eV Core-core repulsion = 26086.963273 eV Total energy + Delta-G solvation = -4136.665804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.46520 -40.66492 -39.51569 -38.23233 -37.59740 -35.51256 -34.36109 -33.67919 -32.23850 -31.59833 -30.86014 -28.67858 -27.44142 -27.16674 -25.85075 -23.95099 -23.29805 -22.89519 -22.05995 -20.89468 -20.12126 -19.40424 -18.72958 -18.49653 -17.92858 -16.90585 -16.84620 -16.63075 -16.30602 -16.10463 -15.86025 -15.52455 -15.48564 -15.22438 -14.98983 -14.85141 -14.71231 -14.37337 -14.26569 -14.02983 -13.92315 -13.59688 -13.41835 -13.23762 -12.98875 -12.85964 -12.80460 -12.52623 -12.48269 -12.34335 -12.23630 -12.16362 -12.08898 -11.98658 -11.52959 -11.35470 -11.21354 -11.13960 -10.89358 -10.80354 -10.68160 -9.63810 -9.61161 -8.98215 -8.48101 -6.16591 0.51531 0.75123 1.32825 1.42047 1.51989 1.65589 2.05949 2.17015 2.82856 3.14094 3.29546 3.43920 3.65729 3.71632 3.79217 3.92906 4.02596 4.09779 4.14280 4.18709 4.28924 4.30764 4.40087 4.41496 4.46319 4.50351 4.57747 4.58502 4.60147 4.70103 4.72927 4.83637 4.85666 4.87105 4.98044 5.00737 5.03693 5.10441 5.11560 5.12639 5.21117 5.27338 5.30058 5.47369 5.55803 5.63280 5.65689 5.72195 5.74918 6.02170 6.22306 6.42669 6.91475 6.96539 7.23285 7.78422 8.75891 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002040 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.767441 B =13722.373955 C =14773.532360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.053 0.947 4 C 0.074 3.926 5 O -0.596 6.596 6 C -0.070 4.070 7 C -0.128 4.128 8 C 0.109 3.891 9 N -0.611 5.611 10 C 0.512 3.488 11 O -0.583 6.583 12 C -0.089 4.089 13 C -0.025 4.025 14 C -0.180 4.180 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.021 2.979 24 H -0.251 1.251 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.193 4.193 28 C 0.100 3.900 29 C -0.132 4.132 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.394 0.606 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.118 0.882 46 H 0.272 0.728 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.104 0.896 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.903 -19.591 13.740 30.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.071 0.929 4 C -0.003 4.003 5 O -0.405 6.405 6 C -0.089 4.089 7 C -0.166 4.166 8 C -0.013 4.013 9 N -0.345 5.345 10 C 0.301 3.699 11 O -0.463 6.463 12 C -0.128 4.128 13 C -0.026 4.026 14 C -0.198 4.198 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.213 4.213 28 C -0.021 4.021 29 C -0.170 4.170 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.244 0.756 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.136 0.864 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.122 0.878 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.546 -18.880 13.535 29.726 hybrid contribution 1.459 0.596 0.224 1.592 sum -17.087 -18.284 13.759 28.559 Atomic orbital electron populations 1.21781 0.93885 1.02401 1.01730 1.21124 0.97086 0.99267 0.93117 0.92861 1.22398 0.98445 0.94485 0.84982 1.86434 1.81928 1.54456 1.17646 1.21067 0.93631 1.00725 0.93458 1.22034 0.96695 1.00231 0.97683 1.21615 0.98338 0.97581 0.83804 1.48242 1.08314 1.60933 1.16991 1.20963 0.86624 0.77290 0.84979 1.90735 1.16889 1.57202 1.81443 1.20731 0.96779 1.03830 0.91499 1.19213 0.96215 0.91622 0.95546 1.20970 1.01060 1.00061 0.97718 1.21142 0.94990 0.94502 0.98467 1.21292 1.06106 0.96341 1.02845 1.19874 0.93580 0.85637 0.94786 1.83936 1.45141 1.26767 1.58358 1.21874 1.08510 1.03565 1.14976 0.88201 1.26642 1.01701 0.94242 0.99722 1.70199 1.42090 1.07631 1.36227 0.84503 0.75409 0.79258 0.76826 1.17460 1.18993 1.19433 1.20198 1.01319 0.98689 1.01072 1.22015 0.77412 1.02768 0.99927 1.21984 1.02548 0.98924 0.93544 0.93624 0.91648 0.91573 0.92084 0.93167 0.75611 0.88616 0.89175 0.93880 0.89214 0.92176 0.86484 0.83815 0.83437 0.83579 0.86428 0.91864 0.87915 0.87987 0.88441 0.87783 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.74 71.98 0.63 -0.91 16 2 C -0.09 -1.10 2.21 -10.79 -0.02 -1.12 16 3 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.07 0.83 6.21 71.98 0.45 1.28 16 5 O -0.60 -8.32 13.19 -148.98 -1.97 -10.28 16 6 C -0.07 -0.74 1.74 -10.77 -0.02 -0.76 16 7 C -0.13 -1.93 5.05 30.67 0.15 -1.78 16 8 C 0.11 2.03 6.44 86.36 0.56 2.59 16 9 N -0.61 -12.15 2.98 -819.73 -2.44 -14.59 16 10 C 0.51 14.74 7.69 87.66 0.67 15.42 16 11 O -0.58 -23.73 15.45 -3.03 -0.05 -23.78 16 12 C -0.09 -2.19 4.18 29.10 0.12 -2.07 16 13 C -0.03 -0.92 4.37 -19.88 -0.09 -1.00 16 14 C -0.18 -6.06 9.70 22.30 0.22 -5.84 16 15 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 16 C -0.25 -11.64 9.17 22.39 0.21 -11.43 16 17 C 0.11 6.01 6.65 22.58 0.15 6.16 16 18 O -0.23 -15.06 9.76 -22.76 -0.22 -15.29 16 19 C -0.41 -25.40 9.49 67.92 0.64 -24.75 16 20 H 0.10 5.67 5.20 -2.91 -0.02 5.65 16 21 C -0.03 -1.56 5.49 84.83 0.47 -1.09 16 22 N -0.92 -59.02 13.67 21.61 0.30 -58.73 16 23 Si 1.02 44.84 29.55 68.60 2.03 46.86 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 C -0.19 -9.04 9.65 22.39 0.22 -8.82 16 28 C 0.10 1.08 6.31 86.22 0.54 1.62 16 29 C -0.13 -1.39 5.03 30.53 0.15 -1.24 16 30 H 0.04 0.65 7.82 -2.39 -0.02 0.63 16 31 H 0.06 0.61 6.40 -2.39 -0.02 0.60 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.54 6.15 -2.38 -0.01 0.52 16 35 H 0.39 2.06 9.12 -74.06 -0.68 1.39 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 1.07 6.25 -2.38 -0.01 1.06 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.55 7.00 -2.39 -0.02 1.53 16 41 H 0.12 2.47 7.62 -2.39 -0.02 2.45 16 42 H 0.14 2.21 7.90 -2.39 -0.02 2.19 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 46 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 47 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 48 H 0.10 0.87 5.93 -2.39 -0.01 0.85 16 49 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.10 0.67 6.36 -2.39 -0.02 0.65 16 51 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -88.85 403.08 3.19 -85.66 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.27 Total: 26.39 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 5.27 Total: -36.26 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -2.15 Total: -73.31 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -2.23 Total: -49.35 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -88.85 3.19 -85.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846476459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.779 kcal (2) G-P(sol) polarization free energy of solvation -88.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds