Wall clock time and date at job start Wed Apr 1 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47099 * 2 1 4 4 C 1.53002 * 109.47069 * 239.99835 * 2 1 3 5 5 N 1.46503 * 109.46820 * 65.00013 * 4 2 1 6 6 C 1.34777 * 120.00051 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99353 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.99931 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.47000 * 180.02562 * 8 6 5 10 10 C 1.37645 * 120.13007 * 265.30719 * 9 8 6 11 11 C 1.38606 * 120.24649 * 180.32491 * 10 9 8 12 12 C 1.38653 * 120.50471 * 359.65965 * 11 10 9 13 13 C 1.37600 * 120.24898 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.12867 * 84.99790 * 9 8 6 15 15 C 1.41400 * 120.24530 * 359.97438 * 14 9 8 16 16 H 1.08003 * 119.99719 * 25.87056 * 15 14 9 17 17 C 1.39942 * 120.00205 * 205.88123 * 15 14 9 18 18 N 1.30821 * 119.99968 * 16.29869 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 196.30797 * 17 15 14 20 20 H 1.48496 * 109.47194 * 265.18190 * 19 17 15 21 21 H 1.48505 * 109.46937 * 25.18007 * 19 17 15 22 22 H 1.48498 * 109.47234 * 145.18150 * 19 17 15 23 23 C 1.50702 * 109.46992 * 120.00178 * 2 1 3 24 24 O 1.20827 * 119.99905 * 120.00001 * 23 2 1 25 25 O 1.34227 * 119.99943 * 299.99426 * 23 2 1 26 26 C 1.45207 * 116.99982 * 180.02562 * 25 23 2 27 27 C 1.52996 * 109.46885 * 60.00320 * 26 25 23 28 28 C 1.52999 * 109.46922 * 180.02562 * 26 25 23 29 29 C 1.53005 * 109.46862 * 300.00410 * 26 25 23 30 30 H 1.08990 * 109.47207 * 59.99905 * 1 2 3 31 31 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46873 * 299.99817 * 1 2 3 33 33 H 1.08994 * 109.47287 * 305.00104 * 4 2 1 34 34 H 1.08997 * 109.47057 * 184.99955 * 4 2 1 35 35 H 0.97002 * 120.00149 * 0.02562 * 5 4 2 36 36 H 1.09000 * 109.47297 * 60.00731 * 8 6 5 37 37 H 1.08997 * 109.47185 * 300.00030 * 8 6 5 38 38 H 1.07994 * 119.87429 * 0.02562 * 10 9 8 39 39 H 1.08002 * 119.74758 * 179.69746 * 11 10 9 40 40 H 1.07998 * 119.87893 * 180.02562 * 12 11 10 41 41 H 1.07997 * 120.12664 * 180.02562 * 13 12 11 42 42 H 0.97002 * 120.00001 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47155 * 60.00265 * 27 26 25 44 44 H 1.09006 * 109.46997 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47201 * 299.99554 * 27 26 25 46 46 H 1.08994 * 109.47236 * 60.00350 * 28 26 25 47 47 H 1.09006 * 109.46609 * 179.97438 * 28 26 25 48 48 H 1.08994 * 109.46894 * 299.99860 * 28 26 25 49 49 H 1.08996 * 109.47013 * 60.00528 * 29 26 25 50 50 H 1.09007 * 109.46616 * 180.02562 * 29 26 25 51 51 H 1.08994 * 109.47178 * 299.99494 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 1.9964 -0.4131 -3.6659 7 8 2.6264 -1.4432 -3.7792 8 6 1.5982 0.3655 -4.8931 9 6 2.1004 -0.3449 -6.1237 10 6 3.3059 0.0120 -6.6839 11 6 3.7669 -0.6352 -7.8196 12 6 3.0249 -1.6526 -8.4000 13 6 1.8200 -2.0304 -7.8533 14 6 1.3418 -1.3800 -6.7005 15 6 0.1053 -1.7601 -6.1296 16 1 -0.4632 -1.0482 -5.5496 17 6 -0.3817 -3.0588 -6.3160 18 7 0.4209 -4.0052 -6.7301 19 14 -2.1780 -3.4407 -5.9737 20 1 -2.3182 -3.9631 -4.5908 21 1 -2.9838 -2.2019 -6.1190 22 1 -2.6598 -4.4608 -6.9394 23 6 2.0323 -0.7105 1.2305 24 8 2.7270 -1.6928 1.1196 25 8 1.7081 -0.2518 2.4496 26 6 2.2277 -0.9858 3.5897 27 6 3.7570 -0.9842 3.5432 28 6 1.7557 -0.3192 4.8834 29 6 1.7175 -2.4275 3.5436 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7995 -1.2056 35 1 1.1488 0.8595 -2.3517 36 1 2.0329 1.3640 -4.8469 37 1 0.5119 0.4438 -4.9371 38 1 3.8924 0.8026 -6.2398 39 1 4.7116 -0.3454 -8.2553 40 1 3.3939 -2.1503 -9.2845 41 1 1.2438 -2.8233 -8.3068 42 1 0.0832 -4.9053 -6.8596 43 1 4.1205 0.0429 3.5760 44 1 4.1471 -1.5356 4.3988 45 1 4.0930 -1.4593 2.6215 46 1 0.6662 -0.3207 4.9163 47 1 2.1454 -0.8705 5.7392 48 1 2.1188 0.7079 4.9164 49 1 2.0536 -2.9025 2.6219 50 1 2.1073 -2.9783 4.3997 51 1 0.6281 -2.4286 3.5768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847193826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:35 Heat of formation + Delta-G solvation = -120.140689 kcal Electronic energy + Delta-G solvation = -30693.697802 eV Core-core repulsion = 26557.348580 eV Total energy + Delta-G solvation = -4136.349222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.16450 -39.17259 -37.67013 -37.16030 -35.49316 -34.31142 -33.54074 -32.33302 -31.48339 -29.39752 -27.74954 -27.70031 -27.41714 -26.06327 -25.00210 -24.21454 -21.28401 -20.87727 -20.47106 -19.71410 -19.20276 -17.41146 -17.17081 -16.80356 -16.39854 -16.09831 -15.57236 -15.21342 -15.13008 -14.60154 -14.48674 -14.31773 -14.02894 -13.92094 -13.47094 -13.30038 -13.06402 -12.82243 -12.66402 -12.54499 -12.46918 -12.43017 -12.25374 -12.21687 -11.79874 -11.70900 -11.51285 -11.47622 -11.44643 -11.23074 -11.08449 -11.04406 -10.83211 -10.65636 -10.65101 -10.36357 -10.10431 -9.43095 -9.29521 -9.08770 -9.04782 -8.62663 -7.26262 -7.24190 -6.64793 -4.25843 2.03513 2.32774 2.84778 3.03162 3.10047 3.13062 3.31399 3.49695 3.77825 3.98280 4.29079 4.39223 4.42338 4.55566 4.59599 4.65986 4.74419 4.94106 5.14502 5.21501 5.36199 5.37683 5.44699 5.47178 5.52484 5.57759 5.59520 5.67055 5.77955 5.83301 5.93914 5.95850 5.99241 6.00424 6.08278 6.23454 6.31075 6.34385 6.42241 6.58108 6.82193 6.83857 7.17236 7.34564 7.48154 7.63218 7.70011 7.94957 8.02407 8.11009 8.18836 8.38387 8.70798 8.97128 9.01452 9.07428 10.30209 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002527 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.939874 B =11076.383805 C =12269.018297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.113 0.887 4 C 0.137 3.863 5 N -0.747 5.747 6 C 0.515 3.485 7 O -0.507 6.507 8 C -0.067 4.067 9 C -0.183 4.183 10 C -0.080 4.080 11 C -0.242 4.242 12 C -0.105 4.105 13 C -0.162 4.162 14 C 0.130 3.870 15 C -0.459 4.459 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.789 5.789 19 Si 0.901 3.099 20 H -0.272 1.272 21 H -0.261 1.261 22 H -0.276 1.276 23 C 0.472 3.528 24 O -0.494 6.494 25 O -0.350 6.350 26 C 0.116 3.884 27 C -0.184 4.184 28 C -0.140 4.140 29 C -0.184 4.184 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.393 0.607 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.278 0.722 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 9.239 19.968 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.131 0.869 4 C 0.013 3.987 5 N -0.404 5.404 6 C 0.302 3.698 7 O -0.379 6.379 8 C -0.107 4.107 9 C -0.185 4.185 10 C -0.098 4.098 11 C -0.262 4.262 12 C -0.124 4.124 13 C -0.182 4.182 14 C 0.128 3.872 15 C -0.489 4.489 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.414 5.414 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.185 1.185 22 H -0.201 1.201 23 C 0.314 3.686 24 O -0.380 6.380 25 O -0.267 6.267 26 C 0.080 3.920 27 C -0.241 4.241 28 C -0.197 4.197 29 C -0.242 4.242 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.227 0.773 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.895 7.870 19.826 21.350 hybrid contribution -0.866 -0.114 0.439 0.978 sum -1.761 7.755 20.265 21.770 Atomic orbital electron populations 1.21805 0.91394 1.03619 1.03474 1.21243 0.98916 1.01271 0.90048 0.86908 1.20978 1.00598 0.95311 0.81796 1.46084 1.60551 1.28051 1.05665 1.21115 0.78923 0.86092 0.83641 1.90730 1.37816 1.23345 1.85990 1.20239 1.02264 0.97189 0.90985 1.18988 0.97042 1.04770 0.97677 1.20287 0.94977 0.98617 0.95955 1.20293 1.01130 1.03390 1.01356 1.20672 0.95996 0.97038 0.98666 1.21276 0.96891 1.02863 0.97142 1.17331 0.91467 0.88874 0.89545 1.19432 1.03693 0.96397 1.29369 0.90734 1.25844 0.98980 0.96100 0.93068 1.69842 1.35685 1.01972 1.33949 0.86425 0.83047 0.79119 0.78860 1.19761 1.18464 1.20085 1.23355 0.77484 0.83022 0.84717 1.90632 1.34908 1.25388 1.87116 1.86532 1.69805 1.55714 1.14690 1.22194 0.94092 0.91782 0.83922 1.22500 0.93928 1.02926 1.04768 1.21845 1.02392 1.01370 0.94084 1.22503 1.01701 0.95193 1.04760 0.90532 0.91653 0.91113 0.90785 0.90932 0.77288 0.90763 0.89010 0.89786 0.89722 0.89648 0.86608 0.91082 0.91992 0.91039 0.89653 0.91461 0.90382 0.91484 0.89623 0.91059 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.00 37.16 0.33 -0.95 16 2 C -0.10 -0.97 2.86 -91.77 -0.26 -1.24 16 3 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.14 1.97 4.41 -4.04 -0.02 1.96 16 5 N -0.75 -10.90 5.28 -60.30 -0.32 -11.22 16 6 C 0.52 10.36 7.82 -10.99 -0.09 10.28 16 7 O -0.51 -13.09 16.03 5.56 0.09 -13.00 16 8 C -0.07 -1.29 5.35 -29.04 -0.16 -1.45 16 9 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 10 C -0.08 -1.87 9.66 -39.66 -0.38 -2.26 16 11 C -0.24 -5.74 10.05 -39.29 -0.39 -6.14 16 12 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 13 C -0.16 -4.39 8.68 -38.87 -0.34 -4.73 16 14 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 15 C -0.46 -12.10 8.46 -37.74 -0.32 -12.42 16 16 H 0.07 1.83 6.36 -52.48 -0.33 1.50 16 17 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 18 N -0.79 -21.40 10.98 55.55 0.61 -20.79 16 19 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 C 0.47 5.58 6.57 36.01 0.24 5.81 16 24 O -0.49 -7.17 11.42 -18.75 -0.21 -7.38 16 25 O -0.35 -3.65 9.79 -39.25 -0.38 -4.03 16 26 C 0.12 1.05 1.13 -90.62 -0.10 0.94 16 27 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 28 C -0.14 -0.89 8.85 37.16 0.33 -0.56 16 29 C -0.18 -1.71 8.37 37.16 0.31 -1.40 16 30 H 0.08 0.61 7.18 -51.93 -0.37 0.23 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 35 H 0.39 4.17 7.66 -40.82 -0.31 3.85 16 36 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 37 H 0.09 1.67 6.48 -51.93 -0.34 1.34 16 38 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 41 H 0.12 3.21 6.23 -52.49 -0.33 2.89 16 42 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.98 5.89 -51.93 -0.31 0.67 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 1.01 5.89 -51.93 -0.31 0.71 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 412.88 15.07 6.22 6.22 Total: -1.00 -33.71 412.88 -9.28 -42.99 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -8.18 Total: 9.78 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.08 Total: -16.56 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.29 Total: -32.01 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.51 Total: -24.41 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.71 -9.28 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847193826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.153 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds