Wall clock time and date at job start Wed Apr 1 2020 05:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47099 * 2 1 4 4 C 1.53002 * 109.47069 * 239.99835 * 2 1 3 5 5 N 1.46503 * 109.46820 * 65.00013 * 4 2 1 6 6 C 1.34777 * 120.00051 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99353 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.99931 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.47000 * 180.02562 * 8 6 5 10 10 C 1.37645 * 120.13007 * 265.30719 * 9 8 6 11 11 C 1.38606 * 120.24649 * 180.32491 * 10 9 8 12 12 C 1.38653 * 120.50471 * 359.65965 * 11 10 9 13 13 C 1.37600 * 120.24898 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.12867 * 84.99790 * 9 8 6 15 15 C 1.41400 * 120.24530 * 359.97438 * 14 9 8 16 16 H 1.08003 * 119.99719 * 25.87056 * 15 14 9 17 17 C 1.39942 * 120.00205 * 205.88123 * 15 14 9 18 18 N 1.30821 * 119.99968 * 16.29869 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 196.30797 * 17 15 14 20 20 H 1.48496 * 109.47194 * 265.18190 * 19 17 15 21 21 H 1.48505 * 109.46937 * 25.18007 * 19 17 15 22 22 H 1.48498 * 109.47234 * 145.18150 * 19 17 15 23 23 C 1.50702 * 109.46992 * 120.00178 * 2 1 3 24 24 O 1.20827 * 119.99905 * 120.00001 * 23 2 1 25 25 O 1.34227 * 119.99943 * 299.99426 * 23 2 1 26 26 C 1.45207 * 116.99982 * 180.02562 * 25 23 2 27 27 C 1.52996 * 109.46885 * 60.00320 * 26 25 23 28 28 C 1.52999 * 109.46922 * 180.02562 * 26 25 23 29 29 C 1.53005 * 109.46862 * 300.00410 * 26 25 23 30 30 H 1.08990 * 109.47207 * 59.99905 * 1 2 3 31 31 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46873 * 299.99817 * 1 2 3 33 33 H 1.08994 * 109.47287 * 305.00104 * 4 2 1 34 34 H 1.08997 * 109.47057 * 184.99955 * 4 2 1 35 35 H 0.97002 * 120.00149 * 0.02562 * 5 4 2 36 36 H 1.09000 * 109.47297 * 60.00731 * 8 6 5 37 37 H 1.08997 * 109.47185 * 300.00030 * 8 6 5 38 38 H 1.07994 * 119.87429 * 0.02562 * 10 9 8 39 39 H 1.08002 * 119.74758 * 179.69746 * 11 10 9 40 40 H 1.07998 * 119.87893 * 180.02562 * 12 11 10 41 41 H 1.07997 * 120.12664 * 180.02562 * 13 12 11 42 42 H 0.97002 * 120.00001 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47155 * 60.00265 * 27 26 25 44 44 H 1.09006 * 109.46997 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47201 * 299.99554 * 27 26 25 46 46 H 1.08994 * 109.47236 * 60.00350 * 28 26 25 47 47 H 1.09006 * 109.46609 * 179.97438 * 28 26 25 48 48 H 1.08994 * 109.46894 * 299.99860 * 28 26 25 49 49 H 1.08996 * 109.47013 * 60.00528 * 29 26 25 50 50 H 1.09007 * 109.46616 * 180.02562 * 29 26 25 51 51 H 1.08994 * 109.47178 * 299.99494 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 1.9964 -0.4131 -3.6659 7 8 2.6264 -1.4432 -3.7792 8 6 1.5982 0.3655 -4.8931 9 6 2.1004 -0.3449 -6.1237 10 6 3.3059 0.0120 -6.6839 11 6 3.7669 -0.6352 -7.8196 12 6 3.0249 -1.6526 -8.4000 13 6 1.8200 -2.0304 -7.8533 14 6 1.3418 -1.3800 -6.7005 15 6 0.1053 -1.7601 -6.1296 16 1 -0.4632 -1.0482 -5.5496 17 6 -0.3817 -3.0588 -6.3160 18 7 0.4209 -4.0052 -6.7301 19 14 -2.1780 -3.4407 -5.9737 20 1 -2.3182 -3.9631 -4.5908 21 1 -2.9838 -2.2019 -6.1190 22 1 -2.6598 -4.4608 -6.9394 23 6 2.0323 -0.7105 1.2305 24 8 2.7270 -1.6928 1.1196 25 8 1.7081 -0.2518 2.4496 26 6 2.2277 -0.9858 3.5897 27 6 3.7570 -0.9842 3.5432 28 6 1.7557 -0.3192 4.8834 29 6 1.7175 -2.4275 3.5436 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7995 -1.2056 35 1 1.1488 0.8595 -2.3517 36 1 2.0329 1.3640 -4.8469 37 1 0.5119 0.4438 -4.9371 38 1 3.8924 0.8026 -6.2398 39 1 4.7116 -0.3454 -8.2553 40 1 3.3939 -2.1503 -9.2845 41 1 1.2438 -2.8233 -8.3068 42 1 0.0832 -4.9053 -6.8596 43 1 4.1205 0.0429 3.5760 44 1 4.1471 -1.5356 4.3988 45 1 4.0930 -1.4593 2.6215 46 1 0.6662 -0.3207 4.9163 47 1 2.1454 -0.8705 5.7392 48 1 2.1188 0.7079 4.9164 49 1 2.0536 -2.9025 2.6219 50 1 2.1073 -2.9783 4.3997 51 1 0.6281 -2.4286 3.5768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847193826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:34 Heat of formation + Delta-G solvation = -139.744595 kcal Electronic energy + Delta-G solvation = -30694.547891 eV Core-core repulsion = 26557.348580 eV Total energy + Delta-G solvation = -4137.199312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.05630 -40.73512 -39.19179 -38.36345 -36.70391 -35.45676 -35.12293 -33.72591 -33.03032 -31.32217 -28.95613 -28.41682 -28.30968 -27.37909 -26.67390 -25.32631 -22.82031 -22.36867 -21.87133 -21.05558 -20.40854 -19.06570 -18.37610 -17.91683 -17.42933 -17.30626 -17.11328 -16.71562 -16.43361 -16.09383 -15.66907 -15.42297 -15.27610 -15.14994 -14.79639 -14.61708 -14.49378 -14.36022 -13.80614 -13.53699 -13.37411 -13.34986 -13.26880 -13.12812 -12.97350 -12.92333 -12.88007 -12.76189 -12.67247 -12.54119 -12.46563 -12.33938 -12.25190 -12.09348 -12.02827 -11.42553 -11.30020 -11.15620 -11.00457 -10.99675 -10.73603 -10.04020 -9.20352 -9.15423 -8.55456 -6.24320 1.01088 1.12821 1.14327 1.36259 1.48919 1.49962 1.55292 1.91773 2.21506 2.48279 2.83500 3.36096 3.67463 3.73856 3.74942 3.78598 3.80895 3.93466 4.13645 4.17904 4.42358 4.48618 4.54427 4.56634 4.58345 4.65876 4.71874 4.73187 4.75486 4.80187 4.81917 4.84813 4.86917 4.88402 4.96232 5.06252 5.11164 5.22132 5.24072 5.27271 5.27939 5.38589 5.48600 5.53454 5.57567 5.81522 6.06335 6.16570 6.23905 6.45662 6.71113 6.74738 6.79004 7.01412 7.14903 7.53149 8.42290 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002527 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.939874 B =11076.383805 C =12269.018297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.148 0.852 4 C 0.142 3.858 5 N -0.719 5.719 6 C 0.515 3.485 7 O -0.575 6.575 8 C -0.065 4.065 9 C -0.188 4.188 10 C -0.091 4.091 11 C -0.246 4.246 12 C -0.118 4.118 13 C -0.197 4.197 14 C 0.096 3.904 15 C -0.482 4.482 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.834 5.834 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.244 1.244 22 H -0.272 1.272 23 C 0.471 3.529 24 O -0.528 6.528 25 O -0.345 6.345 26 C 0.106 3.894 27 C -0.182 4.182 28 C -0.134 4.134 29 C -0.183 4.183 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.418 0.582 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.281 0.719 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.089 0.911 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 12.335 22.324 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.166 0.834 4 C 0.018 3.982 5 N -0.375 5.375 6 C 0.303 3.697 7 O -0.453 6.453 8 C -0.105 4.105 9 C -0.190 4.190 10 C -0.109 4.109 11 C -0.266 4.266 12 C -0.136 4.136 13 C -0.217 4.217 14 C 0.093 3.907 15 C -0.511 4.511 16 H 0.105 0.895 17 C -0.186 4.186 18 N -0.461 5.461 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.167 1.167 22 H -0.196 1.196 23 C 0.315 3.685 24 O -0.418 6.418 25 O -0.262 6.262 26 C 0.071 3.929 27 C -0.239 4.239 28 C -0.191 4.191 29 C -0.240 4.240 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.257 0.743 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.115 0.885 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.108 0.892 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.106 11.048 22.216 24.901 hybrid contribution -0.362 -1.028 -0.247 1.118 sum -2.468 10.020 21.969 24.272 Atomic orbital electron populations 1.21835 0.89799 1.03058 1.05309 1.21182 0.99948 1.01954 0.87150 0.83409 1.20832 0.99310 0.94557 0.83527 1.45713 1.59137 1.28405 1.04223 1.21265 0.78019 0.85135 0.85239 1.90718 1.41214 1.26277 1.87077 1.20304 1.03219 0.98469 0.88473 1.19519 0.96938 1.03672 0.98839 1.20749 0.95041 0.99314 0.95806 1.20714 1.01909 1.02549 1.01380 1.20941 0.95564 0.97658 0.99424 1.21302 0.98233 1.03665 0.98465 1.17772 0.92637 0.90257 0.89995 1.19738 1.04218 0.97108 1.30086 0.89546 1.26812 1.03504 0.95733 0.92553 1.69951 1.37875 1.02502 1.35772 0.85310 0.77219 0.79446 0.78456 1.19676 1.16693 1.19646 1.23643 0.76786 0.82503 0.85595 1.90646 1.36536 1.26964 1.87623 1.86524 1.69552 1.55643 1.14505 1.22501 0.94116 0.91813 0.84517 1.22475 0.94152 1.03305 1.03995 1.21860 1.02752 1.01716 0.92780 1.22483 1.01971 0.95648 1.03932 0.89058 0.93454 0.88881 0.94076 0.92975 0.74345 0.86253 0.87712 0.86390 0.86845 0.87951 0.88726 0.90859 0.91237 0.89273 0.92637 0.90995 0.88532 0.90799 0.92746 0.89240 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.00 71.98 0.65 -1.50 16 2 C -0.08 -1.55 2.86 -11.54 -0.03 -1.59 16 3 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.14 4.09 4.41 86.38 0.38 4.47 16 5 N -0.72 -19.73 5.28 -463.07 -2.45 -22.18 16 6 C 0.52 20.35 7.82 87.65 0.69 21.03 16 7 O -0.58 -30.54 16.03 -3.04 -0.05 -30.59 16 8 C -0.07 -2.38 5.35 29.10 0.16 -2.23 16 9 C -0.19 -9.01 4.43 -19.40 -0.09 -9.09 16 10 C -0.09 -4.12 9.66 22.22 0.21 -3.91 16 11 C -0.25 -11.46 10.05 22.46 0.23 -11.23 16 12 C -0.12 -5.95 10.02 22.22 0.22 -5.72 16 13 C -0.20 -11.13 8.68 22.73 0.20 -10.93 16 14 C 0.10 5.28 5.56 -21.29 -0.12 5.16 16 15 C -0.48 -25.90 8.46 23.46 0.20 -25.70 16 16 H 0.09 4.24 6.36 -2.91 -0.02 4.22 16 17 C 0.03 1.45 5.16 85.26 0.44 1.89 16 18 N -0.83 -47.50 10.98 21.83 0.24 -47.26 16 19 Si 0.97 39.63 29.59 68.60 2.03 41.66 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.24 -9.15 7.11 99.48 0.71 -8.44 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 C 0.47 10.89 6.57 71.24 0.47 11.35 16 24 O -0.53 -16.04 11.42 21.96 0.25 -15.79 16 25 O -0.35 -6.63 9.79 -51.39 -0.50 -7.13 16 26 C 0.11 1.76 1.13 -10.79 -0.01 1.74 16 27 C -0.18 -3.11 8.37 71.98 0.60 -2.50 16 28 C -0.13 -1.32 8.85 71.98 0.64 -0.68 16 29 C -0.18 -3.29 8.37 71.98 0.60 -2.68 16 30 H 0.09 1.11 7.18 -2.39 -0.02 1.09 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.04 8.11 -2.39 -0.02 1.02 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.73 7.96 -2.39 -0.02 1.71 16 35 H 0.42 7.33 7.66 -92.71 -0.71 6.62 16 36 H 0.12 3.25 8.06 -2.39 -0.02 3.23 16 37 H 0.10 3.56 6.48 -2.39 -0.02 3.55 16 38 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.09 5.61 6.23 -2.91 -0.02 5.59 16 42 H 0.28 14.68 8.30 -92.71 -0.77 13.91 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.05 1.31 5.89 -2.39 -0.01 1.29 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.05 1.34 5.89 -2.39 -0.01 1.33 16 50 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 51 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.76 412.88 5.17 -74.58 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.22 Total: 38.85 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 5.43 Total: -32.14 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -2.21 Total: -69.44 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.30 Total: -53.51 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -79.76 5.17 -74.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847193826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.161 kcal (2) G-P(sol) polarization free energy of solvation -79.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds