Wall clock time and date at job start Wed Apr 1 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47251 * 2 1 4 4 C 1.52995 * 109.47367 * 239.99776 * 2 1 3 5 5 O 1.42898 * 109.47354 * 65.00040 * 4 2 1 6 6 C 1.53003 * 109.47095 * 119.99443 * 2 1 3 7 7 H 1.09008 * 109.70232 * 173.69178 * 6 2 1 8 8 C 1.53195 * 109.58608 * 53.34346 * 6 2 1 9 9 C 1.53039 * 109.31549 * 185.57501 * 8 6 2 10 10 C 1.53039 * 109.53528 * 61.36280 * 9 8 6 11 11 C 1.53626 * 109.24222 * 298.51096 * 10 9 8 12 12 N 1.46916 * 109.59047 * 294.05251 * 6 2 1 13 13 C 1.34781 * 120.63238 * 353.37128 * 12 6 2 14 14 O 1.21279 * 119.99613 * 353.47548 * 13 12 6 15 15 C 1.50697 * 120.00266 * 173.20351 * 13 12 6 16 16 C 1.50705 * 109.47089 * 179.97438 * 15 13 12 17 17 C 1.38319 * 119.96549 * 269.72699 * 16 15 13 18 18 C 1.38283 * 120.13211 * 179.76671 * 17 16 15 19 19 C 1.38116 * 120.07077 * 0.50716 * 18 17 16 20 20 C 1.38859 * 119.93201 * 359.74887 * 19 18 17 21 21 O 1.35749 * 120.07044 * 179.97438 * 20 19 18 22 22 C 1.34830 * 117.00302 * 6.24681 * 21 20 19 23 23 H 1.08008 * 119.99665 * 5.71778 * 22 21 20 24 24 C 1.38656 * 120.00408 * 185.71640 * 22 21 20 25 25 N 1.31556 * 119.99795 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99926 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46988 * 89.99656 * 26 24 22 28 28 H 1.48491 * 109.46950 * 210.00215 * 26 24 22 29 29 H 1.48504 * 109.46927 * 330.00043 * 26 24 22 30 30 C 1.38078 * 119.96168 * 89.99928 * 16 15 13 31 31 H 1.09001 * 109.47484 * 302.57287 * 1 2 3 32 32 H 1.08995 * 109.47079 * 62.57830 * 1 2 3 33 33 H 1.09000 * 109.47021 * 182.57706 * 1 2 3 34 34 H 1.09001 * 109.47218 * 184.99940 * 4 2 1 35 35 H 1.08997 * 109.47197 * 304.99808 * 4 2 1 36 36 H 0.96693 * 114.00401 * 180.02562 * 5 4 2 37 37 H 1.09004 * 109.49409 * 305.52883 * 8 6 2 38 38 H 1.08997 * 109.49886 * 65.58828 * 8 6 2 39 39 H 1.08997 * 109.45970 * 181.37662 * 9 8 6 40 40 H 1.09000 * 109.46332 * 301.34611 * 9 8 6 41 41 H 1.09001 * 109.50221 * 58.58876 * 10 9 8 42 42 H 1.09000 * 109.49735 * 178.64934 * 10 9 8 43 43 H 1.08992 * 109.74067 * 295.11569 * 11 10 9 44 44 H 1.09003 * 109.66291 * 174.55225 * 11 10 9 45 45 H 1.08996 * 109.47311 * 300.00020 * 15 13 12 46 46 H 1.09003 * 109.47057 * 59.99944 * 15 13 12 47 47 H 1.07995 * 119.93577 * 0.02562 * 17 16 15 48 48 H 1.08003 * 119.96226 * 180.25493 * 18 17 16 49 49 H 1.08001 * 120.03608 * 179.72097 * 19 18 17 50 50 H 0.97002 * 119.99775 * 179.97438 * 25 24 22 51 51 H 1.08005 * 120.03351 * 359.95843 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4130 6 6 2.0400 -0.7211 1.2493 7 1 3.1242 -0.8220 1.1986 8 6 1.3987 -2.1096 1.3386 9 6 1.8034 -2.7701 2.6584 10 6 1.2946 -1.9269 3.8298 11 6 1.9398 -0.5340 3.7689 12 7 1.6723 0.0473 2.4463 13 6 1.1055 1.2650 2.3334 14 8 1.0023 1.7870 1.2436 15 6 0.5944 1.9750 3.5604 16 6 0.0129 3.3076 3.1640 17 6 0.8177 4.4323 3.1378 18 6 0.2888 5.6559 2.7700 19 6 -1.0477 5.7604 2.4376 20 6 -1.8594 4.6342 2.4681 21 8 -3.1735 4.7338 2.1424 22 6 -3.5996 5.9243 1.6744 23 1 -2.8895 6.7160 1.4859 24 6 -4.9494 6.1322 1.4350 25 7 -5.3652 7.2940 0.9788 26 14 -6.1777 4.7632 1.7616 27 1 -6.6652 4.8591 3.1610 28 1 -7.3247 4.8941 0.8277 29 1 -5.5193 3.4481 1.5559 30 6 -1.3240 3.4056 2.8328 31 1 -0.3634 0.5533 0.8660 32 1 -0.3633 0.4733 -0.9122 33 1 -0.3633 -1.0266 0.0462 34 1 3.1263 -0.7995 -1.2055 35 1 1.6055 -1.7198 -1.2950 36 1 1.9526 -0.3834 -3.2440 37 1 0.3138 -2.0125 1.2979 38 1 1.7406 -2.7225 0.5046 39 1 1.3683 -3.7680 2.7135 40 1 2.8896 -2.8444 2.7094 41 1 0.2106 -1.8315 3.7658 42 1 1.5623 -2.4103 4.7694 43 1 3.0159 -0.6199 3.9194 44 1 1.5104 0.1033 4.5419 45 1 -0.1764 1.3689 4.0363 46 1 1.4167 2.1310 4.2588 47 1 1.8621 4.3539 3.4012 48 1 0.9206 6.5315 2.7465 49 1 -1.4612 6.7172 2.1548 50 1 -6.3095 7.4394 0.8110 51 1 -1.9526 2.5277 2.8571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855463294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:56 Heat of formation + Delta-G solvation = -64.216496 kcal Electronic energy + Delta-G solvation = -31786.499981 eV Core-core repulsion = 27652.575813 eV Total energy + Delta-G solvation = -4133.924167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.08366 -39.12177 -37.77406 -37.09404 -36.51035 -34.36416 -33.02992 -32.34162 -31.81845 -29.60484 -29.37560 -27.36305 -26.52619 -25.20894 -24.85897 -23.93367 -21.83525 -21.37710 -20.90067 -20.03407 -18.85616 -17.65339 -17.51423 -17.03243 -16.75412 -16.00428 -15.72902 -15.33019 -15.13240 -14.84183 -14.81142 -14.34062 -14.13893 -14.04683 -13.95303 -13.64088 -13.45222 -13.42118 -13.15812 -12.74803 -12.58570 -12.45992 -12.10823 -12.07290 -11.95685 -11.66266 -11.58967 -11.24390 -11.17041 -11.10273 -10.92059 -10.78017 -10.71990 -10.67450 -10.58588 -10.42457 -10.09407 -10.01967 -9.34950 -8.82978 -8.78633 -8.59499 -8.06062 -7.28590 -6.34738 -4.00943 2.07699 2.35779 2.70663 2.89472 3.26667 3.29427 3.45627 4.07196 4.29775 4.40735 4.46201 4.50881 4.57326 4.67846 4.79708 4.91130 4.93449 5.01295 5.05816 5.09492 5.14120 5.18510 5.24184 5.28068 5.36073 5.40165 5.42359 5.54547 5.59353 5.62048 5.69168 5.70966 5.75426 5.84692 5.90819 5.94955 6.06826 6.19299 6.29414 6.30751 6.33651 6.59998 6.69798 6.77591 6.86026 7.17539 7.28791 7.35183 7.39733 7.58153 7.67829 7.87804 8.11411 8.32784 9.01081 9.64648 10.73351 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.002965 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.584120 B = 9441.301281 C = 9932.964700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.130 0.870 4 C 0.078 3.922 5 O -0.564 6.564 6 C 0.159 3.841 7 H 0.067 0.933 8 C -0.140 4.140 9 C -0.119 4.119 10 C -0.137 4.137 11 C 0.108 3.892 12 N -0.615 5.615 13 C 0.512 3.488 14 O -0.495 6.495 15 C -0.095 4.095 16 C -0.034 4.034 17 C -0.188 4.188 18 C -0.076 4.076 19 C -0.217 4.217 20 C 0.161 3.839 21 O -0.220 6.220 22 C -0.386 4.386 23 H 0.105 0.895 24 C 0.062 3.938 25 N -0.882 5.882 26 Si 0.904 3.096 27 H -0.274 1.274 28 H -0.282 1.282 29 H -0.260 1.260 30 C -0.173 4.173 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.373 0.627 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.132 0.868 50 H 0.278 0.722 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.973 -21.607 4.690 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 H 0.148 0.852 4 C -0.001 4.001 5 O -0.369 6.369 6 C 0.055 3.945 7 H 0.085 0.915 8 C -0.178 4.178 9 C -0.156 4.156 10 C -0.175 4.175 11 C -0.015 4.015 12 N -0.351 5.351 13 C 0.301 3.699 14 O -0.369 6.369 15 C -0.135 4.135 16 C -0.034 4.034 17 C -0.207 4.207 18 C -0.094 4.094 19 C -0.236 4.236 20 C 0.109 3.891 21 O -0.125 6.125 22 C -0.462 4.462 23 H 0.123 0.877 24 C -0.140 4.140 25 N -0.520 5.520 26 Si 0.730 3.270 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.184 1.184 30 C -0.193 4.193 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.219 0.781 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.149 0.851 50 H 0.088 0.912 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 17.253 -20.937 4.488 27.498 hybrid contribution -0.262 -0.906 -0.303 0.991 sum 16.991 -21.843 4.185 27.988 Atomic orbital electron populations 1.21995 0.94065 0.99528 1.03503 1.21896 0.97971 1.02698 0.89629 0.85226 1.22326 0.97129 0.93873 0.86722 1.86577 1.81361 1.52966 1.15948 1.21113 0.98030 0.90499 0.84814 0.91470 1.22167 1.02394 0.95587 0.97654 1.21508 1.00896 0.98737 0.94500 1.22008 1.01329 0.95364 0.98807 1.21829 1.00356 0.94819 0.84517 1.48065 1.62848 1.17741 1.06441 1.20655 0.77402 0.80615 0.91238 1.90727 1.53978 1.65248 1.26980 1.20674 1.01531 0.95104 0.96170 1.18653 0.92743 0.92637 0.99399 1.20397 0.98398 0.92822 1.09036 1.20727 0.94588 0.96731 0.97366 1.21292 0.94326 0.99489 1.08527 1.19019 0.84458 0.93148 0.92482 1.83579 1.20175 1.36092 1.72680 1.20755 0.94129 0.89178 1.42136 0.87732 1.24450 0.96629 0.97031 0.95911 1.69651 1.16738 1.22108 1.43551 0.86196 0.79856 0.82624 0.78332 1.19963 1.20811 1.18360 1.19909 0.94640 0.95597 1.09133 0.91396 0.92387 0.94565 0.94446 0.94390 0.78100 0.90445 0.91064 0.91748 0.91951 0.91199 0.90782 0.91389 0.89323 0.88515 0.88594 0.87838 0.87260 0.85059 0.91152 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.72 37.16 0.29 -1.70 16 2 C -0.10 -1.33 1.87 -90.62 -0.17 -1.50 16 3 H 0.13 2.14 5.56 -53.79 -0.30 1.84 16 4 C 0.08 0.82 6.10 37.16 0.23 1.05 16 5 O -0.56 -6.95 13.15 -35.23 -0.46 -7.42 16 6 C 0.16 1.57 2.65 -67.60 -0.18 1.39 16 7 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 8 C -0.14 -1.11 4.67 -26.61 -0.12 -1.24 16 9 C -0.12 -0.73 5.88 -26.69 -0.16 -0.89 16 10 C -0.14 -0.83 6.10 -26.39 -0.16 -0.99 16 11 C 0.11 0.74 6.38 -3.48 -0.02 0.72 16 12 N -0.62 -6.29 2.93 -164.96 -0.48 -6.77 16 13 C 0.51 6.96 6.25 -10.98 -0.07 6.89 16 14 O -0.49 -8.72 9.95 5.56 0.06 -8.67 16 15 C -0.10 -1.20 4.20 -29.03 -0.12 -1.32 16 16 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 17 C -0.19 -3.30 9.70 -39.54 -0.38 -3.68 16 18 C -0.08 -1.46 10.04 -39.61 -0.40 -1.85 16 19 C -0.22 -4.94 9.13 -39.40 -0.36 -5.30 16 20 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 21 O -0.22 -6.04 8.59 0.05 0.00 -6.04 16 22 C -0.39 -11.28 9.89 30.89 0.31 -10.98 16 23 H 0.11 3.13 5.55 -52.48 -0.29 2.84 16 24 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 25 N -0.88 -26.19 13.96 55.48 0.77 -25.42 16 26 Si 0.90 22.34 28.62 -169.99 -4.86 17.47 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.26 -6.47 7.11 56.52 0.40 -6.07 16 30 C -0.17 -3.61 9.65 -39.40 -0.38 -3.99 16 31 H 0.07 1.14 5.08 -51.93 -0.26 0.88 16 32 H 0.06 0.99 7.76 -51.93 -0.40 0.59 16 33 H 0.04 0.46 6.06 -51.93 -0.31 0.15 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.04 0.34 7.00 -51.93 -0.36 -0.02 16 36 H 0.37 2.66 9.12 45.56 0.42 3.08 16 37 H 0.08 0.74 5.97 -51.93 -0.31 0.43 16 38 H 0.07 0.49 7.02 -51.93 -0.36 0.13 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.52 5.93 -51.93 -0.31 0.21 16 45 H 0.10 1.05 7.92 -51.93 -0.41 0.64 16 46 H 0.10 0.93 7.59 -51.93 -0.39 0.54 16 47 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 48 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 49 H 0.13 3.12 5.73 -52.49 -0.30 2.82 16 50 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 51 H 0.11 2.21 8.06 -52.48 -0.42 1.78 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -34.46 391.01 -8.58 -43.03 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.97 Total: 7.00 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -2.52 Total: -19.08 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.29 Total: -32.19 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.41 Total: -22.13 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.47 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.46 -8.58 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.182 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds