Wall clock time and date at job start Wed Apr 1 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47251 * 2 1 4 4 C 1.52995 * 109.47367 * 239.99776 * 2 1 3 5 5 O 1.42898 * 109.47354 * 65.00040 * 4 2 1 6 6 C 1.53003 * 109.47095 * 119.99443 * 2 1 3 7 7 H 1.09008 * 109.70232 * 173.69178 * 6 2 1 8 8 C 1.53195 * 109.58608 * 53.34346 * 6 2 1 9 9 C 1.53039 * 109.31549 * 185.57501 * 8 6 2 10 10 C 1.53039 * 109.53528 * 61.36280 * 9 8 6 11 11 C 1.53626 * 109.24222 * 298.51096 * 10 9 8 12 12 N 1.46916 * 109.59047 * 294.05251 * 6 2 1 13 13 C 1.34781 * 120.63238 * 353.37128 * 12 6 2 14 14 O 1.21279 * 119.99613 * 353.47548 * 13 12 6 15 15 C 1.50697 * 120.00266 * 173.20351 * 13 12 6 16 16 C 1.50705 * 109.47089 * 179.97438 * 15 13 12 17 17 C 1.38319 * 119.96549 * 269.72699 * 16 15 13 18 18 C 1.38283 * 120.13211 * 179.76671 * 17 16 15 19 19 C 1.38116 * 120.07077 * 0.50716 * 18 17 16 20 20 C 1.38859 * 119.93201 * 359.74887 * 19 18 17 21 21 O 1.35749 * 120.07044 * 179.97438 * 20 19 18 22 22 C 1.34830 * 117.00302 * 6.24681 * 21 20 19 23 23 H 1.08008 * 119.99665 * 5.71778 * 22 21 20 24 24 C 1.38656 * 120.00408 * 185.71640 * 22 21 20 25 25 N 1.31556 * 119.99795 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99926 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46988 * 89.99656 * 26 24 22 28 28 H 1.48491 * 109.46950 * 210.00215 * 26 24 22 29 29 H 1.48504 * 109.46927 * 330.00043 * 26 24 22 30 30 C 1.38078 * 119.96168 * 89.99928 * 16 15 13 31 31 H 1.09001 * 109.47484 * 302.57287 * 1 2 3 32 32 H 1.08995 * 109.47079 * 62.57830 * 1 2 3 33 33 H 1.09000 * 109.47021 * 182.57706 * 1 2 3 34 34 H 1.09001 * 109.47218 * 184.99940 * 4 2 1 35 35 H 1.08997 * 109.47197 * 304.99808 * 4 2 1 36 36 H 0.96693 * 114.00401 * 180.02562 * 5 4 2 37 37 H 1.09004 * 109.49409 * 305.52883 * 8 6 2 38 38 H 1.08997 * 109.49886 * 65.58828 * 8 6 2 39 39 H 1.08997 * 109.45970 * 181.37662 * 9 8 6 40 40 H 1.09000 * 109.46332 * 301.34611 * 9 8 6 41 41 H 1.09001 * 109.50221 * 58.58876 * 10 9 8 42 42 H 1.09000 * 109.49735 * 178.64934 * 10 9 8 43 43 H 1.08992 * 109.74067 * 295.11569 * 11 10 9 44 44 H 1.09003 * 109.66291 * 174.55225 * 11 10 9 45 45 H 1.08996 * 109.47311 * 300.00020 * 15 13 12 46 46 H 1.09003 * 109.47057 * 59.99944 * 15 13 12 47 47 H 1.07995 * 119.93577 * 0.02562 * 17 16 15 48 48 H 1.08003 * 119.96226 * 180.25493 * 18 17 16 49 49 H 1.08001 * 120.03608 * 179.72097 * 19 18 17 50 50 H 0.97002 * 119.99775 * 179.97438 * 25 24 22 51 51 H 1.08005 * 120.03351 * 359.95843 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4130 6 6 2.0400 -0.7211 1.2493 7 1 3.1242 -0.8220 1.1986 8 6 1.3987 -2.1096 1.3386 9 6 1.8034 -2.7701 2.6584 10 6 1.2946 -1.9269 3.8298 11 6 1.9398 -0.5340 3.7689 12 7 1.6723 0.0473 2.4463 13 6 1.1055 1.2650 2.3334 14 8 1.0023 1.7870 1.2436 15 6 0.5944 1.9750 3.5604 16 6 0.0129 3.3076 3.1640 17 6 0.8177 4.4323 3.1378 18 6 0.2888 5.6559 2.7700 19 6 -1.0477 5.7604 2.4376 20 6 -1.8594 4.6342 2.4681 21 8 -3.1735 4.7338 2.1424 22 6 -3.5996 5.9243 1.6744 23 1 -2.8895 6.7160 1.4859 24 6 -4.9494 6.1322 1.4350 25 7 -5.3652 7.2940 0.9788 26 14 -6.1777 4.7632 1.7616 27 1 -6.6652 4.8591 3.1610 28 1 -7.3247 4.8941 0.8277 29 1 -5.5193 3.4481 1.5559 30 6 -1.3240 3.4056 2.8328 31 1 -0.3634 0.5533 0.8660 32 1 -0.3633 0.4733 -0.9122 33 1 -0.3633 -1.0266 0.0462 34 1 3.1263 -0.7995 -1.2055 35 1 1.6055 -1.7198 -1.2950 36 1 1.9526 -0.3834 -3.2440 37 1 0.3138 -2.0125 1.2979 38 1 1.7406 -2.7225 0.5046 39 1 1.3683 -3.7680 2.7135 40 1 2.8896 -2.8444 2.7094 41 1 0.2106 -1.8315 3.7658 42 1 1.5623 -2.4103 4.7694 43 1 3.0159 -0.6199 3.9194 44 1 1.5104 0.1033 4.5419 45 1 -0.1764 1.3689 4.0363 46 1 1.4167 2.1310 4.2588 47 1 1.8621 4.3539 3.4012 48 1 0.9206 6.5315 2.7465 49 1 -1.4612 6.7172 2.1548 50 1 -6.3095 7.4394 0.8110 51 1 -1.9526 2.5277 2.8571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855463294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:55 Heat of formation + Delta-G solvation = -88.182860 kcal Electronic energy + Delta-G solvation = -31787.539240 eV Core-core repulsion = 27652.575813 eV Total energy + Delta-G solvation = -4134.963427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00340 -40.83530 -38.93818 -38.05245 -37.88565 -35.28615 -34.48260 -33.77870 -33.16116 -31.07597 -30.33545 -28.67130 -27.53743 -27.21012 -25.68839 -24.66794 -23.37355 -22.68410 -21.79576 -21.17569 -19.80961 -19.60234 -18.79228 -18.39915 -17.61178 -17.01464 -16.90138 -16.67135 -16.42521 -16.16969 -15.80512 -15.63165 -15.46669 -15.08157 -15.02822 -14.88767 -14.82559 -14.37879 -14.20417 -14.18353 -14.05648 -13.83002 -13.42963 -13.29425 -13.04439 -12.81138 -12.61924 -12.49532 -12.43019 -12.38171 -12.31030 -11.94451 -11.89860 -11.73371 -11.66283 -11.38075 -11.34464 -11.29513 -10.92592 -10.85519 -9.89821 -9.58338 -9.42082 -9.06216 -8.51977 -6.24496 0.49288 0.70033 1.27249 1.32360 1.49021 1.72961 2.06460 2.26270 2.75372 3.05303 3.10880 3.32166 3.73866 3.82457 3.89176 3.95517 4.06071 4.10094 4.11459 4.22610 4.26117 4.29185 4.35742 4.40326 4.41832 4.51236 4.56023 4.60756 4.68350 4.69271 4.69946 4.77676 4.88920 4.96445 4.99943 5.02925 5.09447 5.13231 5.22953 5.25329 5.28604 5.38928 5.41693 5.51452 5.56665 5.64857 5.72668 5.75512 5.84979 5.90659 6.24538 6.52866 6.82425 6.94969 7.37583 7.57871 8.60256 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.002965 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.584120 B = 9441.301281 C = 9932.964700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 H 0.092 0.908 4 C 0.078 3.922 5 O -0.597 6.597 6 C 0.160 3.840 7 H 0.087 0.913 8 C -0.136 4.136 9 C -0.116 4.116 10 C -0.135 4.135 11 C 0.099 3.901 12 N -0.608 5.608 13 C 0.507 3.493 14 O -0.547 6.547 15 C -0.092 4.092 16 C -0.023 4.023 17 C -0.169 4.169 18 C -0.078 4.078 19 C -0.241 4.241 20 C 0.119 3.881 21 O -0.248 6.248 22 C -0.399 4.399 23 H 0.077 0.923 24 C 0.009 3.991 25 N -0.924 5.924 26 Si 0.971 3.029 27 H -0.261 1.261 28 H -0.265 1.265 29 H -0.268 1.268 30 C -0.180 4.180 31 H 0.045 0.955 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.393 0.607 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.118 0.882 46 H 0.139 0.861 47 H 0.148 0.852 48 H 0.139 0.861 49 H 0.105 0.895 50 H 0.285 0.715 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.053 -25.593 7.023 33.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.120 4.120 3 H 0.110 0.890 4 C 0.000 4.000 5 O -0.405 6.405 6 C 0.057 3.943 7 H 0.104 0.896 8 C -0.174 4.174 9 C -0.153 4.153 10 C -0.173 4.173 11 C -0.022 4.022 12 N -0.342 5.342 13 C 0.297 3.703 14 O -0.426 6.426 15 C -0.131 4.131 16 C -0.024 4.024 17 C -0.188 4.188 18 C -0.096 4.096 19 C -0.260 4.260 20 C 0.071 3.929 21 O -0.156 6.156 22 C -0.475 4.475 23 H 0.095 0.905 24 C -0.189 4.189 25 N -0.565 5.565 26 Si 0.793 3.207 27 H -0.185 1.185 28 H -0.189 1.189 29 H -0.192 1.192 30 C -0.199 4.199 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.242 0.758 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.136 0.864 46 H 0.157 0.843 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.123 0.877 50 H 0.095 0.905 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.392 -24.970 6.853 32.960 hybrid contribution -0.875 0.242 -0.983 1.338 sum 19.518 -24.728 5.871 32.045 Atomic orbital electron populations 1.21876 0.96151 0.99598 1.00436 1.21715 0.96077 1.01571 0.92628 0.89042 1.22382 0.98437 0.93995 0.85205 1.86534 1.82018 1.54369 1.17597 1.21165 0.99041 0.90862 0.83238 0.89565 1.22127 1.00940 0.94613 0.99680 1.21512 1.01865 0.98851 0.93111 1.22012 1.00369 0.95023 0.99917 1.22181 1.01990 0.95296 0.82719 1.48123 1.61268 1.16622 1.08142 1.20784 0.77375 0.81550 0.90599 1.90767 1.56253 1.66876 1.28694 1.20777 1.03380 0.92336 0.96647 1.19200 0.91211 0.95403 0.96565 1.20980 1.00304 0.91711 1.05766 1.21103 0.93160 0.99003 0.96299 1.21304 0.96220 0.98231 1.10249 1.19598 0.83756 0.95107 0.94488 1.83511 1.22124 1.35016 1.74930 1.20690 0.94290 0.89488 1.43062 0.90541 1.25287 0.98270 0.99551 0.95750 1.69733 1.17558 1.23941 1.45304 0.85220 0.77562 0.78808 0.79121 1.18529 1.18943 1.19240 1.20217 0.96444 0.94330 1.08939 0.93658 0.96092 0.92821 0.92234 0.92461 0.75783 0.92419 0.89703 0.90926 0.90461 0.92653 0.88477 0.89171 0.87946 0.86385 0.84347 0.83458 0.84284 0.87681 0.90538 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 7.72 71.98 0.56 -3.23 16 2 C -0.10 -2.55 1.87 -10.80 -0.02 -2.57 16 3 H 0.09 3.09 5.56 -31.91 -0.18 2.91 16 4 C 0.08 1.53 6.10 71.98 0.44 1.97 16 5 O -0.60 -14.69 13.15 -148.98 -1.96 -16.65 16 6 C 0.16 2.71 2.65 44.98 0.12 2.83 16 7 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 8 C -0.14 -1.72 4.67 30.67 0.14 -1.58 16 9 C -0.12 -0.91 5.88 30.62 0.18 -0.73 16 10 C -0.14 -1.03 6.10 30.82 0.19 -0.84 16 11 C 0.10 0.87 6.38 86.51 0.55 1.42 16 12 N -0.61 -10.47 2.93 -794.20 -2.33 -12.79 16 13 C 0.51 12.70 6.25 87.66 0.55 13.24 16 14 O -0.55 -19.30 9.95 -3.03 -0.03 -19.33 16 15 C -0.09 -1.98 4.20 29.10 0.12 -1.86 16 16 C -0.02 -0.77 4.37 -19.88 -0.09 -0.85 16 17 C -0.17 -5.48 9.70 22.30 0.22 -5.26 16 18 C -0.08 -2.94 10.04 22.25 0.22 -2.71 16 19 C -0.24 -11.58 9.13 22.39 0.20 -11.38 16 20 C 0.12 6.09 6.65 22.58 0.15 6.24 16 21 O -0.25 -14.53 8.59 -22.73 -0.20 -14.72 16 22 C -0.40 -25.06 9.89 67.92 0.67 -24.39 16 23 H 0.08 5.05 5.55 -2.91 -0.02 5.04 16 24 C 0.01 0.58 5.49 84.83 0.47 1.04 16 25 N -0.92 -57.65 13.96 21.61 0.30 -57.35 16 26 Si 0.97 47.82 28.62 68.60 1.96 49.78 16 27 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 29 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 30 C -0.18 -7.60 9.65 22.39 0.22 -7.38 16 31 H 0.04 1.58 5.08 -2.39 -0.01 1.56 16 32 H 0.02 0.75 7.76 -2.39 -0.02 0.73 16 33 H 0.05 1.38 6.06 -2.39 -0.01 1.36 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.90 7.00 -2.39 -0.02 0.88 16 36 H 0.39 5.37 9.12 -74.06 -0.68 4.70 16 37 H 0.06 0.98 5.97 -2.39 -0.01 0.96 16 38 H 0.08 0.86 7.02 -2.39 -0.02 0.84 16 39 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 42 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.10 0.63 5.93 -2.39 -0.01 0.61 16 45 H 0.12 2.09 7.92 -2.39 -0.02 2.08 16 46 H 0.14 1.84 7.59 -2.39 -0.02 1.82 16 47 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 48 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 49 H 0.11 5.52 5.73 -2.91 -0.02 5.50 16 50 H 0.28 16.23 8.31 -92.71 -0.77 15.46 16 51 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -84.04 391.01 2.75 -81.28 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.11 Total: 25.81 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 4.89 Total: -36.03 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -2.03 Total: -70.14 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -2.18 Total: -50.70 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.96 Total: 49.78 kcal Total: -84.04 2.75 -81.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.900 kcal (2) G-P(sol) polarization free energy of solvation -84.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds