Wall clock time and date at job start Wed Apr 1 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47004 * 2 1 4 4 C 1.52994 * 109.47053 * 239.99995 * 2 1 3 5 5 O 1.42895 * 109.47152 * 67.03588 * 4 2 1 6 6 C 1.52999 * 109.47019 * 120.00095 * 2 1 3 7 7 H 1.09003 * 109.69978 * 308.27037 * 6 2 1 8 8 C 1.53192 * 109.58772 * 68.62387 * 6 2 1 9 9 C 1.53043 * 109.33936 * 174.43826 * 8 6 2 10 10 C 1.53037 * 109.53839 * 298.62053 * 9 8 6 11 11 C 1.53184 * 109.31375 * 61.36434 * 10 9 8 12 12 N 1.46927 * 108.77743 * 305.36806 * 11 10 9 13 13 C 1.34783 * 120.62983 * 233.62836 * 12 11 10 14 14 O 1.21283 * 119.99870 * 176.96327 * 13 12 11 15 15 C 1.50703 * 120.00006 * 356.96697 * 13 12 11 16 16 C 1.50696 * 109.46909 * 179.97438 * 15 13 12 17 17 C 1.38323 * 119.96826 * 269.71786 * 16 15 13 18 18 C 1.38269 * 120.14025 * 179.76845 * 17 16 15 19 19 C 1.38126 * 120.06987 * 0.51642 * 18 17 16 20 20 C 1.38862 * 119.92785 * 359.73999 * 19 18 17 21 21 O 1.35753 * 120.06402 * 180.02562 * 20 19 18 22 22 C 1.34821 * 117.00441 * 5.74746 * 21 20 19 23 23 H 1.07999 * 120.00110 * 5.38414 * 22 21 20 24 24 C 1.38651 * 120.00147 * 185.39299 * 22 21 20 25 25 N 1.31560 * 120.00085 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00379 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46782 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47225 * 119.99434 * 26 24 22 29 29 H 1.48499 * 109.47681 * 239.99899 * 26 24 22 30 30 C 1.38082 * 119.96229 * 90.00348 * 16 15 13 31 31 H 1.08990 * 109.47279 * 184.85284 * 1 2 3 32 32 H 1.09001 * 109.47321 * 304.85294 * 1 2 3 33 33 H 1.08995 * 109.46803 * 64.84963 * 1 2 3 34 34 H 1.08999 * 109.46997 * 187.03146 * 4 2 1 35 35 H 1.09005 * 109.47407 * 307.03347 * 4 2 1 36 36 H 0.96705 * 114.00589 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.49307 * 54.47041 * 8 6 2 38 38 H 1.08997 * 109.49980 * 294.40682 * 8 6 2 39 39 H 1.08995 * 109.45994 * 58.64334 * 9 8 6 40 40 H 1.09000 * 109.45404 * 178.59767 * 9 8 6 41 41 H 1.08997 * 109.49902 * 181.31575 * 10 9 8 42 42 H 1.08999 * 109.49677 * 301.38373 * 10 9 8 43 43 H 1.09007 * 109.58666 * 65.15379 * 11 10 9 44 44 H 1.09003 * 109.59099 * 185.43666 * 11 10 9 45 45 H 1.09001 * 109.46547 * 299.99971 * 15 13 12 46 46 H 1.09004 * 109.47220 * 59.99393 * 15 13 12 47 47 H 1.07999 * 119.92805 * 0.02562 * 17 16 15 48 48 H 1.08007 * 119.96674 * 180.23293 * 18 17 16 49 49 H 1.07999 * 120.03736 * 179.76910 * 19 18 17 50 50 H 0.96999 * 120.00420 * 180.02562 * 25 24 22 51 51 H 1.07997 * 120.03907 * 359.97438 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.7032 0.0409 -2.4101 6 6 2.0400 -0.7213 1.2492 7 1 1.5632 -0.3027 2.1356 8 6 1.7152 -2.2150 1.1484 9 6 2.3476 -2.9521 2.3312 10 6 3.8681 -2.7849 2.2848 11 6 4.2179 -1.2979 2.3988 12 7 3.4975 -0.5608 1.3517 13 6 4.1606 0.2470 0.5006 14 8 3.5629 0.8070 -0.3939 15 6 5.6447 0.4543 0.6603 16 6 6.1388 1.3933 -0.4098 17 6 6.5788 0.8905 -1.6209 18 6 7.0284 1.7492 -2.6070 19 6 7.0493 3.1117 -2.3814 20 6 6.6132 3.6193 -1.1647 21 8 6.6320 4.9580 -0.9402 22 6 6.9722 5.7480 -1.9783 23 1 7.1293 5.3171 -2.9561 24 6 7.1205 7.1138 -1.7907 25 7 6.9288 7.6388 -0.5997 26 14 7.5925 8.2084 -3.2288 27 1 7.7495 7.3795 -4.4510 28 1 6.5290 9.2210 -3.4502 29 1 8.8747 8.8947 -2.9287 30 6 6.1572 2.7544 -0.1780 31 1 -0.3633 -1.0239 0.0869 32 1 -0.3634 0.5873 0.8433 33 1 -0.3633 0.4367 -0.9302 34 1 3.1227 -0.8315 -1.1885 35 1 1.5776 -1.7062 -1.3144 36 1 1.9961 -0.3578 -3.2410 37 1 2.1159 -2.6122 0.2158 38 1 0.6344 -2.3545 1.1686 39 1 1.9650 -2.5377 3.2639 40 1 2.0968 -4.0114 2.2748 41 1 4.3195 -3.3295 3.1140 42 1 4.2486 -3.1773 1.3417 43 1 3.9187 -0.9262 3.3790 44 1 5.2920 -1.1642 2.2697 45 1 5.8482 0.8821 1.6420 46 1 6.1574 -0.5033 0.5680 47 1 6.5674 -0.1748 -1.7982 48 1 7.3678 1.3538 -3.5530 49 1 7.4040 3.7817 -3.1506 50 1 7.0322 8.5943 -0.4685 51 1 5.8174 3.1462 0.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855463395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:00 Heat of formation + Delta-G solvation = -65.500894 kcal Electronic energy + Delta-G solvation = -31853.412873 eV Core-core repulsion = 27719.433010 eV Total energy + Delta-G solvation = -4133.979863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.06565 -38.97273 -37.61372 -36.89198 -36.27952 -34.26984 -33.02995 -32.27466 -31.73775 -29.73887 -29.13649 -27.32171 -26.11755 -25.32213 -24.91871 -23.93217 -21.68928 -21.42441 -20.91893 -20.07127 -18.78467 -17.55614 -17.28817 -16.88353 -16.72485 -15.99614 -15.79700 -15.10484 -14.99717 -14.75005 -14.47444 -14.38760 -14.27119 -13.96945 -13.65185 -13.54265 -13.36423 -13.27006 -13.03024 -12.74784 -12.49128 -12.47668 -12.29839 -11.99694 -11.84226 -11.63607 -11.51266 -11.27567 -11.25016 -11.17352 -10.94712 -10.78111 -10.69869 -10.64283 -10.54104 -10.38753 -10.36441 -9.53982 -9.29105 -8.82426 -8.75831 -8.49715 -7.97289 -7.14075 -6.37738 -3.96232 2.16567 2.46623 2.76462 2.95551 3.17542 3.18553 3.24161 4.02732 4.25511 4.43387 4.50932 4.54250 4.61226 4.75381 4.89793 4.96409 4.98831 5.13587 5.16971 5.18733 5.20344 5.26599 5.35595 5.40387 5.46488 5.51884 5.56289 5.58379 5.65442 5.67157 5.72719 5.73821 5.81362 5.83607 5.92264 5.99367 6.01165 6.14686 6.24761 6.27697 6.39277 6.41926 6.73369 6.76365 6.99305 7.15402 7.34140 7.39454 7.44050 7.51893 7.90649 7.90989 8.07758 8.37812 9.08394 9.79985 10.80781 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002666 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.031336 B =10501.216047 C =10977.175174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.125 0.875 4 C 0.103 3.897 5 O -0.563 6.563 6 C 0.157 3.843 7 H 0.074 0.926 8 C -0.138 4.138 9 C -0.119 4.119 10 C -0.136 4.136 11 C 0.107 3.893 12 N -0.618 5.618 13 C 0.504 3.496 14 O -0.490 6.490 15 C -0.094 4.094 16 C -0.030 4.030 17 C -0.196 4.196 18 C -0.074 4.074 19 C -0.230 4.230 20 C 0.156 3.844 21 O -0.180 6.180 22 C -0.388 4.388 23 H 0.091 0.909 24 C 0.038 3.962 25 N -0.865 5.865 26 Si 0.940 3.060 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.277 1.277 30 C -0.173 4.173 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.369 0.631 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.125 0.875 50 H 0.268 0.732 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -23.226 5.805 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.142 0.858 4 C 0.025 3.975 5 O -0.366 6.366 6 C 0.054 3.946 7 H 0.092 0.908 8 C -0.176 4.176 9 C -0.157 4.157 10 C -0.174 4.174 11 C -0.016 4.016 12 N -0.354 5.354 13 C 0.293 3.707 14 O -0.364 6.364 15 C -0.134 4.134 16 C -0.031 4.031 17 C -0.215 4.215 18 C -0.093 4.093 19 C -0.250 4.250 20 C 0.102 3.898 21 O -0.084 6.084 22 C -0.464 4.464 23 H 0.108 0.892 24 C -0.166 4.166 25 N -0.500 5.500 26 Si 0.765 3.235 27 H -0.191 1.191 28 H -0.202 1.202 29 H -0.202 1.202 30 C -0.193 4.193 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.215 0.785 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.124 0.876 49 H 0.143 0.857 50 H 0.078 0.922 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.196 -22.128 6.077 24.367 hybrid contribution 0.529 -0.023 -1.033 1.161 sum -7.668 -22.151 5.044 23.977 Atomic orbital electron populations 1.21931 0.95771 1.00825 1.02160 1.21770 0.94397 1.03979 0.91416 0.85795 1.22335 0.98524 0.91082 0.85525 1.86496 1.82283 1.51809 1.16044 1.21265 0.79817 0.95001 0.98561 0.90829 1.22135 1.01106 0.95205 0.99161 1.21514 0.95222 1.00361 0.98604 1.21923 0.96655 0.96114 1.02697 1.21729 0.97456 0.91347 0.91096 1.48176 1.07250 1.46462 1.33507 1.20729 0.89684 0.78900 0.81367 1.90849 1.67189 1.46782 1.31558 1.20665 0.92311 1.00350 1.00077 1.18645 0.98242 0.92256 0.93967 1.20290 1.08763 0.97960 0.94509 1.20654 0.97957 0.93063 0.97592 1.21168 1.09246 0.95517 0.99040 1.19285 0.92455 0.85281 0.92750 1.83984 1.75755 1.10937 1.37749 1.21345 1.48354 0.88312 0.88434 0.89152 1.25268 0.96892 0.96324 0.98099 1.70051 1.45869 1.12665 1.21437 0.85665 0.78344 0.79679 0.79838 1.19126 1.20176 1.20219 1.19919 1.08259 0.91464 0.99634 0.93516 0.93123 0.91730 0.92867 0.96386 0.78549 0.91178 0.90717 0.91775 0.91790 0.90722 0.91468 0.91358 0.89359 0.88529 0.88823 0.88229 0.87636 0.85703 0.92192 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.05 37.16 0.34 -1.37 16 2 C -0.10 -1.28 1.85 -90.62 -0.17 -1.45 16 3 H 0.12 2.15 5.71 -53.21 -0.30 1.85 16 4 C 0.10 1.38 4.34 37.15 0.16 1.54 16 5 O -0.56 -8.57 13.15 -42.72 -0.56 -9.13 16 6 C 0.16 1.62 2.64 -67.56 -0.18 1.44 16 7 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 8 C -0.14 -1.10 4.66 -26.61 -0.12 -1.23 16 9 C -0.12 -0.75 5.88 -26.69 -0.16 -0.90 16 10 C -0.14 -0.82 6.08 -26.62 -0.16 -0.98 16 11 C 0.11 0.79 6.33 -3.71 -0.02 0.76 16 12 N -0.62 -6.60 2.93 -165.17 -0.48 -7.09 16 13 C 0.50 7.12 6.57 -10.98 -0.07 7.05 16 14 O -0.49 -8.82 9.50 -1.93 -0.02 -8.83 16 15 C -0.09 -1.26 4.20 -29.04 -0.12 -1.38 16 16 C -0.03 -0.56 4.37 -104.65 -0.46 -1.01 16 17 C -0.20 -3.54 9.70 -39.54 -0.38 -3.92 16 18 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 19 C -0.23 -5.28 9.13 -39.39 -0.36 -5.64 16 20 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 21 O -0.18 -5.36 9.76 0.07 0.00 -5.36 16 22 C -0.39 -11.24 9.44 30.88 0.29 -10.95 16 23 H 0.09 2.45 5.29 -52.49 -0.28 2.17 16 24 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 25 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 26 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 30 C -0.17 -3.84 9.65 -39.39 -0.38 -4.22 16 31 H 0.05 0.44 6.63 -51.93 -0.34 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.84 7.77 -51.93 -0.40 0.43 16 34 H 0.05 0.79 5.37 -51.93 -0.28 0.51 16 35 H 0.02 0.21 6.65 -51.93 -0.35 -0.14 16 36 H 0.37 4.12 9.12 45.56 0.42 4.53 16 37 H 0.07 0.62 6.16 -51.93 -0.32 0.30 16 38 H 0.07 0.54 6.86 -51.93 -0.36 0.19 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.57 5.96 -51.93 -0.31 0.26 16 45 H 0.10 1.14 8.00 -51.93 -0.42 0.72 16 46 H 0.09 0.98 7.51 -51.93 -0.39 0.59 16 47 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 48 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 49 H 0.13 2.87 5.71 -52.49 -0.30 2.57 16 50 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -35.03 392.17 -8.96 -43.99 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.99 Total: 9.06 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -2.55 Total: -19.44 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.28 Total: -32.36 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.58 Total: -23.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.03 -8.96 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.515 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds