Wall clock time and date at job start Wed Apr 1 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47004 * 2 1 4 4 C 1.52994 * 109.47053 * 239.99995 * 2 1 3 5 5 O 1.42895 * 109.47152 * 67.03588 * 4 2 1 6 6 C 1.52999 * 109.47019 * 120.00095 * 2 1 3 7 7 H 1.09003 * 109.69978 * 308.27037 * 6 2 1 8 8 C 1.53192 * 109.58772 * 68.62387 * 6 2 1 9 9 C 1.53043 * 109.33936 * 174.43826 * 8 6 2 10 10 C 1.53037 * 109.53839 * 298.62053 * 9 8 6 11 11 C 1.53184 * 109.31375 * 61.36434 * 10 9 8 12 12 N 1.46927 * 108.77743 * 305.36806 * 11 10 9 13 13 C 1.34783 * 120.62983 * 233.62836 * 12 11 10 14 14 O 1.21283 * 119.99870 * 176.96327 * 13 12 11 15 15 C 1.50703 * 120.00006 * 356.96697 * 13 12 11 16 16 C 1.50696 * 109.46909 * 179.97438 * 15 13 12 17 17 C 1.38323 * 119.96826 * 269.71786 * 16 15 13 18 18 C 1.38269 * 120.14025 * 179.76845 * 17 16 15 19 19 C 1.38126 * 120.06987 * 0.51642 * 18 17 16 20 20 C 1.38862 * 119.92785 * 359.73999 * 19 18 17 21 21 O 1.35753 * 120.06402 * 180.02562 * 20 19 18 22 22 C 1.34821 * 117.00441 * 5.74746 * 21 20 19 23 23 H 1.07999 * 120.00110 * 5.38414 * 22 21 20 24 24 C 1.38651 * 120.00147 * 185.39299 * 22 21 20 25 25 N 1.31560 * 120.00085 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00379 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46782 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47225 * 119.99434 * 26 24 22 29 29 H 1.48499 * 109.47681 * 239.99899 * 26 24 22 30 30 C 1.38082 * 119.96229 * 90.00348 * 16 15 13 31 31 H 1.08990 * 109.47279 * 184.85284 * 1 2 3 32 32 H 1.09001 * 109.47321 * 304.85294 * 1 2 3 33 33 H 1.08995 * 109.46803 * 64.84963 * 1 2 3 34 34 H 1.08999 * 109.46997 * 187.03146 * 4 2 1 35 35 H 1.09005 * 109.47407 * 307.03347 * 4 2 1 36 36 H 0.96705 * 114.00589 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.49307 * 54.47041 * 8 6 2 38 38 H 1.08997 * 109.49980 * 294.40682 * 8 6 2 39 39 H 1.08995 * 109.45994 * 58.64334 * 9 8 6 40 40 H 1.09000 * 109.45404 * 178.59767 * 9 8 6 41 41 H 1.08997 * 109.49902 * 181.31575 * 10 9 8 42 42 H 1.08999 * 109.49677 * 301.38373 * 10 9 8 43 43 H 1.09007 * 109.58666 * 65.15379 * 11 10 9 44 44 H 1.09003 * 109.59099 * 185.43666 * 11 10 9 45 45 H 1.09001 * 109.46547 * 299.99971 * 15 13 12 46 46 H 1.09004 * 109.47220 * 59.99393 * 15 13 12 47 47 H 1.07999 * 119.92805 * 0.02562 * 17 16 15 48 48 H 1.08007 * 119.96674 * 180.23293 * 18 17 16 49 49 H 1.07999 * 120.03736 * 179.76910 * 19 18 17 50 50 H 0.96999 * 120.00420 * 180.02562 * 25 24 22 51 51 H 1.07997 * 120.03907 * 359.97438 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.7032 0.0409 -2.4101 6 6 2.0400 -0.7213 1.2492 7 1 1.5632 -0.3027 2.1356 8 6 1.7152 -2.2150 1.1484 9 6 2.3476 -2.9521 2.3312 10 6 3.8681 -2.7849 2.2848 11 6 4.2179 -1.2979 2.3988 12 7 3.4975 -0.5608 1.3517 13 6 4.1606 0.2470 0.5006 14 8 3.5629 0.8070 -0.3939 15 6 5.6447 0.4543 0.6603 16 6 6.1388 1.3933 -0.4098 17 6 6.5788 0.8905 -1.6209 18 6 7.0284 1.7492 -2.6070 19 6 7.0493 3.1117 -2.3814 20 6 6.6132 3.6193 -1.1647 21 8 6.6320 4.9580 -0.9402 22 6 6.9722 5.7480 -1.9783 23 1 7.1293 5.3171 -2.9561 24 6 7.1205 7.1138 -1.7907 25 7 6.9288 7.6388 -0.5997 26 14 7.5925 8.2084 -3.2288 27 1 7.7495 7.3795 -4.4510 28 1 6.5290 9.2210 -3.4502 29 1 8.8747 8.8947 -2.9287 30 6 6.1572 2.7544 -0.1780 31 1 -0.3633 -1.0239 0.0869 32 1 -0.3634 0.5873 0.8433 33 1 -0.3633 0.4367 -0.9302 34 1 3.1227 -0.8315 -1.1885 35 1 1.5776 -1.7062 -1.3144 36 1 1.9961 -0.3578 -3.2410 37 1 2.1159 -2.6122 0.2158 38 1 0.6344 -2.3545 1.1686 39 1 1.9650 -2.5377 3.2639 40 1 2.0968 -4.0114 2.2748 41 1 4.3195 -3.3295 3.1140 42 1 4.2486 -3.1773 1.3417 43 1 3.9187 -0.9262 3.3790 44 1 5.2920 -1.1642 2.2697 45 1 5.8482 0.8821 1.6420 46 1 6.1574 -0.5033 0.5680 47 1 6.5674 -0.1748 -1.7982 48 1 7.3678 1.3538 -3.5530 49 1 7.4040 3.7817 -3.1506 50 1 7.0322 8.5943 -0.4685 51 1 5.8174 3.1462 0.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855463395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:59 Heat of formation + Delta-G solvation = -89.536395 kcal Electronic energy + Delta-G solvation = -31854.455130 eV Core-core repulsion = 27719.433010 eV Total energy + Delta-G solvation = -4135.022121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02660 -40.71492 -38.82114 -37.95583 -37.77599 -35.25532 -34.32489 -33.81899 -33.14236 -30.88530 -30.45212 -28.67781 -27.30949 -27.11434 -25.83513 -24.69013 -23.28336 -22.80803 -21.83099 -21.21146 -19.79411 -19.37325 -18.71274 -18.36460 -17.65279 -16.98630 -16.87379 -16.70414 -16.22744 -16.10068 -15.97580 -15.50787 -15.34896 -15.16545 -15.04341 -14.62592 -14.41596 -14.33044 -14.27680 -13.95647 -13.87122 -13.57663 -13.47745 -13.42883 -12.98747 -12.92253 -12.72281 -12.50032 -12.41891 -12.32932 -12.22595 -12.09738 -11.97760 -11.81019 -11.54545 -11.37227 -11.33063 -11.22214 -10.81501 -10.57092 -9.93796 -9.58403 -9.36901 -8.96457 -8.47832 -6.16029 0.53976 0.76951 1.32708 1.41761 1.51590 1.72848 2.05787 2.17121 2.83325 3.16649 3.39935 3.44379 3.73005 3.80656 3.83784 3.98770 4.09175 4.10663 4.19681 4.21171 4.30747 4.32323 4.35713 4.42715 4.44891 4.55194 4.58858 4.61220 4.69474 4.71304 4.74078 4.84409 4.90658 4.97187 5.04353 5.05884 5.12124 5.13322 5.14680 5.23950 5.25799 5.31495 5.35518 5.46014 5.51392 5.65889 5.73978 5.76509 5.82248 6.02691 6.24250 6.51021 6.96946 6.98151 7.36510 7.79220 8.76160 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002666 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.031336 B =10501.216047 C =10977.175174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.076 0.924 4 C 0.107 3.893 5 O -0.591 6.591 6 C 0.156 3.844 7 H 0.079 0.921 8 C -0.131 4.131 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.097 3.903 12 N -0.609 5.609 13 C 0.500 3.500 14 O -0.538 6.538 15 C -0.092 4.092 16 C -0.019 4.019 17 C -0.178 4.178 18 C -0.073 4.073 19 C -0.247 4.247 20 C 0.113 3.887 21 O -0.236 6.236 22 C -0.412 4.412 23 H 0.098 0.902 24 C -0.024 4.024 25 N -0.922 5.922 26 Si 1.019 2.981 27 H -0.253 1.253 28 H -0.269 1.269 29 H -0.264 1.264 30 C -0.192 4.192 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.383 0.617 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.136 0.864 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.115 0.885 50 H 0.272 0.728 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -27.539 5.905 29.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.094 0.906 4 C 0.030 3.970 5 O -0.397 6.397 6 C 0.053 3.947 7 H 0.096 0.904 8 C -0.169 4.169 9 C -0.155 4.155 10 C -0.169 4.169 11 C -0.025 4.025 12 N -0.344 5.344 13 C 0.289 3.711 14 O -0.416 6.416 15 C -0.131 4.131 16 C -0.020 4.020 17 C -0.196 4.196 18 C -0.091 4.091 19 C -0.267 4.267 20 C 0.063 3.937 21 O -0.143 6.143 22 C -0.488 4.488 23 H 0.115 0.885 24 C -0.221 4.221 25 N -0.561 5.561 26 Si 0.838 3.162 27 H -0.176 1.176 28 H -0.194 1.194 29 H -0.189 1.189 30 C -0.212 4.212 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.154 0.846 47 H 0.163 0.837 48 H 0.161 0.839 49 H 0.133 0.867 50 H 0.081 0.919 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.013 -26.539 6.203 28.408 hybrid contribution 0.395 0.973 -0.988 1.442 sum -7.618 -25.566 5.215 27.182 Atomic orbital electron populations 1.21865 0.94769 1.02244 1.01245 1.21633 0.95276 1.01686 0.93016 0.90603 1.22345 0.97920 0.91741 0.84975 1.86468 1.82609 1.53208 1.17410 1.21301 0.79588 0.96626 0.97162 0.90350 1.22083 1.01927 0.93035 0.99861 1.21526 0.95262 1.00894 0.97820 1.21909 0.96572 0.94902 1.03472 1.22072 0.97951 0.92047 0.90389 1.48204 1.07519 1.45474 1.33158 1.20815 0.89850 0.78989 0.81454 1.90886 1.68059 1.48823 1.33858 1.20755 0.92326 1.01059 0.98974 1.19155 0.95942 0.91276 0.95628 1.20895 1.05333 1.00065 0.93305 1.21104 0.96868 0.91489 0.99600 1.21274 1.10030 0.97348 0.98004 1.19879 0.94442 0.84480 0.94899 1.83935 1.78573 1.13018 1.38753 1.21819 1.48826 0.89179 0.88980 0.88493 1.26602 0.96503 0.97535 1.01504 1.70194 1.48389 1.13258 1.24211 0.84528 0.78369 0.77243 0.76018 1.17613 1.19383 1.18921 1.20177 1.08862 0.93191 0.98922 0.91034 0.92593 0.93902 0.94112 0.94125 0.76956 0.91825 0.89744 0.91153 0.90411 0.88498 0.91800 0.90222 0.88009 0.86911 0.84590 0.83732 0.83860 0.86710 0.91855 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.05 71.98 0.65 -2.56 16 2 C -0.10 -2.55 1.85 -10.79 -0.02 -2.57 16 3 H 0.08 2.78 5.71 -22.61 -0.13 2.65 16 4 C 0.11 2.81 4.34 71.98 0.31 3.12 16 5 O -0.59 -18.22 13.15 -141.82 -1.86 -20.09 16 6 C 0.16 2.94 2.64 44.96 0.12 3.06 16 7 H 0.08 1.41 8.13 -2.39 -0.02 1.39 16 8 C -0.13 -1.66 4.66 30.67 0.14 -1.52 16 9 C -0.12 -0.97 5.88 30.62 0.18 -0.79 16 10 C -0.13 -0.98 6.08 30.67 0.19 -0.79 16 11 C 0.10 1.05 6.33 86.36 0.55 1.60 16 12 N -0.61 -11.60 2.93 -794.85 -2.33 -13.92 16 13 C 0.50 13.39 6.57 87.66 0.58 13.96 16 14 O -0.54 -19.58 9.50 4.12 0.04 -19.54 16 15 C -0.09 -2.20 4.20 29.10 0.12 -2.07 16 16 C -0.02 -0.69 4.37 -19.88 -0.09 -0.77 16 17 C -0.18 -5.87 9.70 22.30 0.22 -5.65 16 18 C -0.07 -2.70 10.04 22.25 0.22 -2.47 16 19 C -0.25 -11.69 9.13 22.39 0.20 -11.49 16 20 C 0.11 6.08 6.65 22.58 0.15 6.23 16 21 O -0.24 -15.14 9.76 -22.67 -0.22 -15.36 16 22 C -0.41 -25.43 9.44 67.92 0.64 -24.79 16 23 H 0.10 5.57 5.29 -2.91 -0.02 5.55 16 24 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 25 N -0.92 -58.87 13.67 21.61 0.30 -58.57 16 26 Si 1.02 45.00 29.55 68.60 2.03 47.03 16 27 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 30 C -0.19 -8.88 9.65 22.39 0.22 -8.66 16 31 H 0.07 1.22 6.63 -2.39 -0.02 1.20 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.13 7.77 -2.39 -0.02 1.11 16 34 H 0.04 1.17 5.37 -2.39 -0.01 1.15 16 35 H 0.04 0.86 6.65 -2.38 -0.02 0.84 16 36 H 0.38 8.52 9.12 -74.05 -0.68 7.84 16 37 H 0.06 0.91 6.16 -2.39 -0.01 0.90 16 38 H 0.08 0.92 6.86 -2.39 -0.02 0.91 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.10 0.84 5.96 -2.39 -0.01 0.82 16 45 H 0.11 2.37 8.00 -2.39 -0.02 2.35 16 46 H 0.14 2.12 7.51 -2.38 -0.02 2.10 16 47 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 48 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 49 H 0.12 5.52 5.71 -2.91 -0.02 5.51 16 50 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 51 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -85.66 392.17 2.96 -82.70 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.16 Total: 34.92 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 4.85 Total: -37.17 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.03 Total: -72.49 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -2.05 Total: -54.99 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -85.66 2.96 -82.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.833 kcal (2) G-P(sol) polarization free energy of solvation -85.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds