Wall clock time and date at job start Wed Apr 1 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47418 * 2 1 4 4 C 1.53001 * 109.46904 * 119.99885 * 2 1 3 5 5 O 1.42904 * 109.46926 * 296.09576 * 4 2 1 6 6 C 1.52999 * 109.47232 * 239.99781 * 2 1 3 7 7 H 1.08994 * 109.58620 * 54.95538 * 6 2 1 8 8 C 1.53194 * 109.58920 * 294.66696 * 6 2 1 9 9 C 1.53037 * 109.31522 * 185.57923 * 8 6 2 10 10 C 1.53043 * 109.53671 * 61.36411 * 9 8 6 11 11 C 1.53185 * 109.31532 * 298.63669 * 10 9 8 12 12 N 1.46934 * 109.58600 * 175.23849 * 6 2 1 13 13 C 1.34780 * 120.62986 * 353.39366 * 12 6 2 14 14 O 1.21286 * 119.99942 * 354.27107 * 13 12 6 15 15 C 1.50693 * 120.00008 * 174.26966 * 13 12 6 16 16 C 1.50700 * 109.47347 * 180.02562 * 15 13 12 17 17 C 1.38319 * 119.96417 * 269.72681 * 16 15 13 18 18 C 1.38279 * 120.13945 * 179.76798 * 17 16 15 19 19 C 1.38121 * 120.06956 * 0.50082 * 18 17 16 20 20 C 1.38860 * 119.92561 * 359.75372 * 19 18 17 21 21 O 1.35760 * 120.06385 * 179.97438 * 20 19 18 22 22 C 1.34822 * 117.00258 * 6.15777 * 21 20 19 23 23 H 1.07995 * 120.00112 * 5.65981 * 22 21 20 24 24 C 1.38651 * 119.99991 * 185.65566 * 22 21 20 25 25 N 1.31557 * 120.00278 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00028 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47250 * 60.00121 * 26 24 22 28 28 H 1.48504 * 109.47059 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47128 * 300.00058 * 26 24 22 30 30 C 1.38076 * 119.96810 * 89.99882 * 16 15 13 31 31 H 1.09004 * 109.47098 * 55.20671 * 1 2 3 32 32 H 1.09005 * 109.47143 * 175.20359 * 1 2 3 33 33 H 1.08998 * 109.47310 * 295.20855 * 1 2 3 34 34 H 1.08996 * 109.47164 * 56.09667 * 4 2 1 35 35 H 1.09005 * 109.46962 * 176.09948 * 4 2 1 36 36 H 0.96703 * 113.99839 * 180.02562 * 5 4 2 37 37 H 1.08996 * 109.49707 * 305.53412 * 8 6 2 38 38 H 1.08999 * 109.49328 * 65.62747 * 8 6 2 39 39 H 1.08997 * 109.46140 * 181.39251 * 9 8 6 40 40 H 1.09002 * 109.45513 * 301.35020 * 9 8 6 41 41 H 1.08998 * 109.49274 * 58.58823 * 10 9 8 42 42 H 1.09006 * 109.49391 * 178.65345 * 10 9 8 43 43 H 1.09000 * 109.58633 * 174.42181 * 11 10 9 44 44 H 1.09000 * 109.59017 * 294.84642 * 11 10 9 45 45 H 1.09000 * 109.47047 * 300.00093 * 15 13 12 46 46 H 1.08997 * 109.47300 * 60.00085 * 15 13 12 47 47 H 1.08007 * 119.93469 * 359.97438 * 17 16 15 48 48 H 1.08008 * 119.96772 * 180.25521 * 18 17 16 49 49 H 1.07996 * 120.03900 * 179.72864 * 19 18 17 50 50 H 0.96995 * 120.00638 * 180.02562 * 25 24 22 51 51 H 1.08004 * 120.03263 * 359.95259 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6399 0.0034 2.4142 6 6 2.0400 -0.7213 -1.2492 7 1 1.6059 -0.2638 -2.1381 8 6 1.6433 -2.1997 -1.1866 9 6 2.2736 -2.9433 -2.3664 10 6 3.7984 -2.8480 -2.2757 11 6 4.2195 -1.3771 -2.3506 12 7 3.5048 -0.6240 -1.3106 13 6 4.1800 0.1383 -0.4277 14 8 3.5747 0.8331 0.3610 15 6 5.6869 0.1275 -0.4204 16 6 6.1908 1.0572 0.6532 17 6 6.4375 2.3856 0.3567 18 6 6.8954 3.2430 1.3402 19 6 7.1177 2.7727 2.6197 20 6 6.8760 1.4385 2.9192 21 8 7.0940 0.9732 4.1758 22 6 7.4222 1.8815 5.1165 23 1 7.4120 2.9346 4.8772 24 6 7.7726 1.4636 6.3912 25 7 7.7855 0.1808 6.6827 26 14 8.2266 2.7222 7.6949 27 1 7.0791 3.6374 7.9203 28 1 8.5598 2.0238 8.9624 29 1 9.4025 3.5058 7.2383 30 6 6.4111 0.5810 1.9304 31 1 -0.3633 0.5864 -0.8440 32 1 -0.3634 -1.0241 -0.0859 33 1 -0.3634 0.4377 0.9298 34 1 1.6206 -1.7267 1.2850 35 1 3.1277 -0.7822 1.2150 36 1 1.9299 -0.3971 3.2453 37 1 1.9992 -2.6325 -0.2517 38 1 0.5581 -2.2876 -1.2390 39 1 1.9727 -3.9905 -2.3381 40 1 1.9366 -2.4939 -3.3006 41 1 4.1339 -3.2748 -1.3306 42 1 4.2470 -3.3980 -3.1030 43 1 5.2941 -1.2959 -2.1875 44 1 3.9652 -0.9736 -3.3308 45 1 6.0419 -0.8836 -0.2209 46 1 6.0573 0.4578 -1.3908 47 1 6.2690 2.7547 -0.6442 48 1 7.0832 4.2807 1.1066 49 1 7.4795 3.4418 3.3864 50 1 8.0303 -0.1115 7.5746 51 1 6.2217 -0.4571 2.1603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855463397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:06 Heat of formation + Delta-G solvation = -89.921982 kcal Electronic energy + Delta-G solvation = -32028.106531 eV Core-core repulsion = 27893.067690 eV Total energy + Delta-G solvation = -4135.038841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05803 -40.71197 -38.82871 -37.97450 -37.80532 -35.26738 -34.32143 -33.82494 -33.15560 -30.88367 -30.43675 -28.68360 -27.31464 -27.16680 -25.84733 -24.69469 -23.28299 -22.80741 -21.84415 -21.20914 -19.80643 -19.39077 -18.70639 -18.40236 -17.64674 -17.08083 -16.88503 -16.65786 -16.32552 -16.11913 -15.96735 -15.50469 -15.31208 -15.11688 -14.98705 -14.76392 -14.46103 -14.38468 -14.22053 -13.98866 -13.86030 -13.59228 -13.50461 -13.41909 -12.96470 -12.86633 -12.73305 -12.51438 -12.42369 -12.35758 -12.22310 -12.12845 -12.00946 -11.82639 -11.58138 -11.38565 -11.35763 -11.23101 -10.79737 -10.63206 -9.93427 -9.56605 -9.42904 -8.96501 -8.47238 -6.15424 0.53618 0.76959 1.33011 1.44182 1.49283 1.70929 2.06042 2.17641 2.83492 3.16608 3.34483 3.44073 3.69580 3.78432 3.83173 3.98165 4.06910 4.10565 4.18028 4.19700 4.28548 4.32022 4.34491 4.41591 4.44045 4.49873 4.58377 4.60502 4.68186 4.71510 4.73506 4.84297 4.88612 4.94252 5.02637 5.05242 5.11160 5.11691 5.13406 5.22953 5.25691 5.31166 5.36000 5.45500 5.50717 5.65652 5.73672 5.76517 5.81465 6.02555 6.23809 6.50389 6.82343 6.97411 7.35227 7.79001 8.76021 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002875 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.755528 B = 9737.384252 C =10391.862429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.096 3.904 5 O -0.590 6.590 6 C 0.158 3.842 7 H 0.090 0.910 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.136 4.136 11 C 0.099 3.901 12 N -0.610 5.610 13 C 0.505 3.495 14 O -0.542 6.542 15 C -0.093 4.093 16 C -0.020 4.020 17 C -0.180 4.180 18 C -0.074 4.074 19 C -0.248 4.248 20 C 0.114 3.886 21 O -0.234 6.234 22 C -0.414 4.414 23 H 0.096 0.904 24 C -0.022 4.022 25 N -0.920 5.920 26 Si 1.017 2.983 27 H -0.261 1.261 28 H -0.269 1.269 29 H -0.256 1.256 30 C -0.189 4.189 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.381 0.619 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.138 0.862 47 H 0.145 0.855 48 H 0.143 0.857 49 H 0.115 0.885 50 H 0.273 0.727 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.014 -5.682 -23.956 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.107 0.893 4 C 0.019 3.981 5 O -0.396 6.396 6 C 0.056 3.944 7 H 0.108 0.892 8 C -0.173 4.173 9 C -0.153 4.153 10 C -0.174 4.174 11 C -0.022 4.022 12 N -0.344 5.344 13 C 0.294 3.706 14 O -0.420 6.420 15 C -0.132 4.132 16 C -0.021 4.021 17 C -0.198 4.198 18 C -0.092 4.092 19 C -0.267 4.267 20 C 0.064 3.936 21 O -0.141 6.141 22 C -0.490 4.490 23 H 0.114 0.886 24 C -0.219 4.219 25 N -0.559 5.559 26 Si 0.836 3.164 27 H -0.185 1.185 28 H -0.193 1.193 29 H -0.180 1.180 30 C -0.209 4.209 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.228 0.772 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.130 0.870 46 H 0.155 0.845 47 H 0.163 0.837 48 H 0.161 0.839 49 H 0.133 0.867 50 H 0.082 0.918 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.564 -5.295 -23.751 26.529 hybrid contribution 0.569 -0.012 1.873 1.958 sum -9.995 -5.308 -21.878 24.632 Atomic orbital electron populations 1.21849 0.94450 1.02186 1.01484 1.21641 0.95591 1.02187 0.92084 0.89294 1.22499 0.97367 0.92635 0.85607 1.86396 1.80253 1.55773 1.17135 1.21277 0.79290 0.96393 0.97464 0.89185 1.22108 1.01840 0.93769 0.99610 1.21512 0.95038 1.00804 0.97941 1.21942 0.96593 0.95745 1.03085 1.22088 0.97828 0.91485 0.90839 1.48223 1.06860 1.47158 1.32201 1.20778 0.90179 0.79658 0.79996 1.90841 1.68914 1.41945 1.40334 1.20763 0.91719 1.00956 0.99760 1.19153 0.95931 0.94777 0.92232 1.20930 1.05898 0.92786 1.00214 1.21113 0.96364 1.00245 0.91469 1.21281 1.10787 0.95461 0.99178 1.19861 0.94221 0.93722 0.85791 1.83934 1.78401 1.37056 1.14661 1.21725 1.47825 0.89222 0.90229 0.88618 1.26555 0.96231 0.99548 0.99552 1.70170 1.47197 1.16281 1.22228 0.84681 0.79432 0.76501 0.75798 1.18517 1.19320 1.18003 1.20129 1.08981 0.98812 0.92954 0.91603 0.91553 0.94064 0.94532 0.95072 0.77156 0.92853 0.89502 0.90843 0.90341 0.92830 0.88316 0.88163 0.89092 0.86953 0.84455 0.83734 0.83936 0.86677 0.91844 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.00 71.98 0.65 -2.51 16 2 C -0.10 -2.56 1.88 -10.80 -0.02 -2.58 16 3 H 0.09 3.08 5.69 -22.11 -0.13 2.95 16 4 C 0.10 2.97 4.69 71.98 0.34 3.31 16 5 O -0.59 -21.29 13.07 -148.90 -1.95 -23.24 16 6 C 0.16 2.94 2.66 44.97 0.12 3.06 16 7 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 8 C -0.14 -1.95 4.67 30.67 0.14 -1.81 16 9 C -0.12 -1.08 5.88 30.62 0.18 -0.90 16 10 C -0.14 -1.25 6.08 30.67 0.19 -1.06 16 11 C 0.10 1.03 6.35 86.35 0.55 1.58 16 12 N -0.61 -11.48 2.94 -794.94 -2.34 -13.82 16 13 C 0.50 13.48 6.16 87.65 0.54 14.02 16 14 O -0.54 -19.80 9.94 -2.97 -0.03 -19.83 16 15 C -0.09 -2.21 4.18 29.10 0.12 -2.09 16 16 C -0.02 -0.72 4.37 -19.88 -0.09 -0.80 16 17 C -0.18 -6.04 9.70 22.30 0.22 -5.82 16 18 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 19 C -0.25 -11.70 9.13 22.39 0.20 -11.50 16 20 C 0.11 6.08 6.65 22.58 0.15 6.23 16 21 O -0.23 -14.79 9.76 -22.76 -0.22 -15.01 16 22 C -0.41 -25.31 9.44 67.92 0.64 -24.67 16 23 H 0.10 5.45 5.31 -2.91 -0.02 5.43 16 24 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 25 N -0.92 -58.01 13.67 21.61 0.30 -57.71 16 26 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 30 C -0.19 -8.63 9.64 22.39 0.22 -8.41 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.20 6.50 -2.38 -0.02 1.19 16 33 H 0.04 1.10 7.66 -2.39 -0.02 1.09 16 34 H 0.04 0.99 6.46 -2.39 -0.02 0.97 16 35 H 0.03 1.10 5.06 -2.38 -0.01 1.09 16 36 H 0.38 11.78 9.12 -74.06 -0.68 11.10 16 37 H 0.05 0.98 6.13 -2.39 -0.01 0.96 16 38 H 0.09 1.07 6.76 -2.39 -0.02 1.05 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.10 0.82 5.93 -2.39 -0.01 0.81 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 2.35 7.86 -2.39 -0.02 2.33 16 46 H 0.14 2.14 7.66 -2.39 -0.02 2.12 16 47 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 48 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 49 H 0.12 5.52 5.73 -2.91 -0.02 5.51 16 50 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 51 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -84.03 391.62 2.79 -81.24 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: 0.17 Total: 39.10 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 4.83 Total: -37.31 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -2.04 Total: -71.53 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -2.20 Total: -58.09 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -84.03 2.79 -81.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.683 kcal (2) G-P(sol) polarization free energy of solvation -84.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds