Wall clock time and date at job start Wed Apr 1 2020 05:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47303 * 2 1 4 4 C 1.53002 * 109.47207 * 120.00342 * 2 1 3 5 5 O 1.42910 * 109.46696 * 294.99836 * 4 2 1 6 6 C 1.52999 * 109.47041 * 239.99660 * 2 1 3 7 7 H 1.08998 * 109.70073 * 187.22510 * 6 2 1 8 8 C 1.53191 * 109.59007 * 307.58723 * 6 2 1 9 9 C 1.53033 * 109.34124 * 174.43646 * 8 6 2 10 10 C 1.53044 * 109.53870 * 298.61753 * 9 8 6 11 11 C 1.53196 * 109.31374 * 61.36392 * 10 9 8 12 12 N 1.46924 * 108.77301 * 305.36669 * 11 10 9 13 13 C 1.34775 * 120.63190 * 233.62473 * 12 11 10 14 14 O 1.21278 * 120.00002 * 176.20603 * 13 12 11 15 15 C 1.50696 * 119.99779 * 356.21526 * 13 12 11 16 16 C 1.50698 * 109.47223 * 179.97438 * 15 13 12 17 17 C 1.38307 * 119.92989 * 269.72254 * 16 15 13 18 18 C 1.38094 * 120.06910 * 179.72331 * 17 16 15 19 19 C 1.38879 * 119.93437 * 0.54903 * 18 17 16 20 20 O 1.35744 * 120.07510 * 179.74934 * 19 18 17 21 21 C 1.34825 * 117.00612 * 185.96757 * 20 19 18 22 22 H 1.08008 * 119.99679 * 5.29522 * 21 20 19 23 23 C 1.38645 * 120.00508 * 185.29114 * 21 20 19 24 24 N 1.31558 * 120.00003 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00304 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47468 * 90.00060 * 25 23 21 27 27 H 1.48501 * 109.47106 * 210.00621 * 25 23 21 28 28 H 1.48506 * 109.46805 * 330.00191 * 25 23 21 29 29 C 1.38887 * 119.85569 * 359.72366 * 19 18 17 30 30 C 1.38091 * 119.93476 * 0.02562 * 29 19 18 31 31 H 1.09004 * 109.47438 * 191.58442 * 1 2 3 32 32 H 1.09007 * 109.46677 * 311.57783 * 1 2 3 33 33 H 1.08998 * 109.47016 * 71.57966 * 1 2 3 34 34 H 1.09000 * 109.47244 * 54.99206 * 4 2 1 35 35 H 1.08996 * 109.47151 * 175.00028 * 4 2 1 36 36 H 0.96703 * 113.99278 * 180.02562 * 5 4 2 37 37 H 1.08996 * 109.49815 * 54.46572 * 8 6 2 38 38 H 1.09002 * 109.49633 * 294.40409 * 8 6 2 39 39 H 1.09002 * 109.45953 * 58.63469 * 9 8 6 40 40 H 1.08998 * 109.46224 * 178.60991 * 9 8 6 41 41 H 1.09001 * 109.49653 * 181.31698 * 10 9 8 42 42 H 1.09002 * 109.49495 * 301.41103 * 10 9 8 43 43 H 1.08999 * 109.58553 * 65.15327 * 11 10 9 44 44 H 1.08996 * 109.58731 * 185.43943 * 11 10 9 45 45 H 1.09005 * 109.47148 * 299.99180 * 15 13 12 46 46 H 1.09002 * 109.47925 * 59.99555 * 15 13 12 47 47 H 1.08007 * 119.96177 * 0.02562 * 17 16 15 48 48 H 1.08004 * 120.03573 * 180.27638 * 18 17 16 49 49 H 0.97002 * 119.99872 * 180.02562 * 24 23 21 50 50 H 1.08001 * 120.03052 * 179.97438 * 29 19 18 51 51 H 1.07995 * 119.96802 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 0.0168 2.4131 6 6 2.0400 -0.7213 -1.2492 7 1 3.1223 -0.8366 -1.1908 8 6 1.3812 -2.1006 -1.3508 9 6 1.7871 -2.7602 -2.6707 10 6 1.2983 -1.9048 -3.8419 11 6 1.9561 -0.5231 -3.7694 12 7 1.6914 0.0577 -2.4461 13 6 1.1391 1.2818 -2.3314 14 8 0.8621 1.7219 -1.2358 15 6 0.8655 2.1034 -3.5647 16 6 0.2503 3.4198 -3.1651 17 6 -1.1243 3.5382 -3.0690 18 6 -1.6909 4.7415 -2.6975 19 6 -0.8794 5.8367 -2.4313 20 8 -1.4335 7.0223 -2.0708 21 6 -0.6004 8.0751 -1.9474 22 1 0.4411 7.9739 -2.2153 23 6 -1.0804 9.2877 -1.4767 24 7 -2.3487 9.4109 -1.1499 25 14 0.0739 10.7465 -1.3064 26 1 0.0800 11.5233 -2.5719 27 1 -0.3876 11.6157 -0.1942 28 1 1.4470 10.2602 -1.0174 29 6 0.5004 5.7161 -2.5341 30 6 1.0611 4.5087 -2.9010 31 1 -0.3634 -1.0067 0.2064 32 1 -0.3633 0.6821 0.7688 33 1 -0.3633 0.3247 -0.9750 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2055 36 1 1.9532 -0.3830 3.2440 37 1 0.2974 -1.9895 -1.3178 38 1 1.7086 -2.7224 -0.5176 39 1 2.8726 -2.8485 -2.7138 40 1 1.3392 -3.7519 -2.7339 41 1 1.5673 -2.3870 -4.7817 42 1 0.2152 -1.7955 -3.7854 43 1 3.0315 -0.6223 -3.9165 44 1 1.5393 0.1211 -4.5435 45 1 1.8003 2.2851 -4.0951 46 1 0.1774 1.5640 -4.2156 47 1 -1.7551 2.6872 -3.2801 48 1 -2.7642 4.8322 -2.6183 49 1 -2.6846 10.2593 -0.8209 50 1 1.1341 6.5660 -2.3281 51 1 2.1340 4.4142 -2.9808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855463915.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:20 Heat of formation + Delta-G solvation = -66.266275 kcal Electronic energy + Delta-G solvation = -31435.678329 eV Core-core repulsion = 27301.665276 eV Total energy + Delta-G solvation = -4134.013052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.04175 -38.96203 -37.70020 -37.09828 -36.37097 -34.34589 -33.00175 -32.33935 -31.05434 -30.06870 -29.63710 -26.88405 -26.51725 -25.29433 -24.70705 -23.84270 -21.89142 -21.43893 -20.86619 -19.97698 -18.73835 -17.91105 -17.51348 -16.89324 -16.73233 -16.02387 -15.71267 -15.36970 -14.84485 -14.75715 -14.51913 -14.29729 -14.25990 -13.95152 -13.88484 -13.55228 -13.42307 -13.28183 -13.15410 -12.77978 -12.61616 -12.56449 -12.10788 -11.99540 -11.76775 -11.64435 -11.48242 -11.20109 -11.17387 -11.06767 -10.92162 -10.78676 -10.68888 -10.56324 -10.51074 -10.38540 -10.35743 -10.02634 -9.28382 -8.84842 -8.73020 -8.51960 -8.06833 -7.08081 -6.38440 -3.96775 2.32418 2.33705 2.78734 2.93959 3.17318 3.18331 3.23000 4.02498 4.07875 4.41574 4.49748 4.52044 4.61846 4.70666 4.94469 4.95459 5.01676 5.05870 5.10375 5.17029 5.20175 5.27655 5.30491 5.33922 5.37475 5.40825 5.43725 5.54684 5.61533 5.68898 5.71552 5.75083 5.80765 5.85261 5.92349 5.93231 6.07746 6.26833 6.30025 6.33016 6.50078 6.67935 6.77133 6.78360 6.99460 7.13197 7.31273 7.41626 7.44973 7.52685 7.57077 7.92146 8.06919 8.39733 9.07410 9.78943 10.79896 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002490 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.469291 B =11243.325577 C =12201.583735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 H 0.119 0.881 4 C 0.076 3.924 5 O -0.564 6.564 6 C 0.157 3.843 7 H 0.067 0.933 8 C -0.138 4.138 9 C -0.119 4.119 10 C -0.136 4.136 11 C 0.109 3.891 12 N -0.616 5.616 13 C 0.503 3.497 14 O -0.495 6.495 15 C -0.080 4.080 16 C -0.168 4.168 17 C -0.059 4.059 18 C -0.191 4.191 19 C 0.157 3.843 20 O -0.179 6.179 21 C -0.389 4.389 22 H 0.091 0.909 23 C 0.038 3.962 24 N -0.864 5.864 25 Si 0.940 3.060 26 H -0.274 1.274 27 H -0.278 1.278 28 H -0.268 1.268 29 C -0.231 4.231 30 C -0.056 4.056 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.373 0.627 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -25.963 -3.929 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.111 4.111 3 H 0.136 0.864 4 C -0.002 4.002 5 O -0.368 6.368 6 C 0.054 3.946 7 H 0.085 0.915 8 C -0.176 4.176 9 C -0.157 4.157 10 C -0.174 4.174 11 C -0.014 4.014 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.369 6.369 15 C -0.120 4.120 16 C -0.169 4.169 17 C -0.077 4.077 18 C -0.211 4.211 19 C 0.103 3.897 20 O -0.082 6.082 21 C -0.466 4.466 22 H 0.108 0.892 23 C -0.166 4.166 24 N -0.499 5.499 25 Si 0.765 3.235 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.192 1.192 29 C -0.251 4.251 30 C -0.075 4.075 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.219 0.781 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.124 0.876 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.266 -25.038 -3.647 27.305 hybrid contribution 1.005 0.113 0.487 1.122 sum 11.271 -24.925 -3.160 27.537 Atomic orbital electron populations 1.21809 0.93837 0.98723 1.02736 1.21756 0.98056 1.01657 0.89596 0.86362 1.22387 0.97198 0.93901 0.86757 1.86585 1.81312 1.52995 1.15952 1.21142 0.98029 0.90484 0.84978 0.91534 1.22132 1.02166 0.95715 0.97584 1.21511 1.00971 0.98651 0.94533 1.21929 1.01259 0.95464 0.98794 1.21706 1.00293 0.94826 0.84617 1.48136 1.63708 1.17132 1.06240 1.20943 0.77037 0.80897 0.91937 1.90803 1.48751 1.70517 1.26818 1.20474 1.01815 0.94346 0.95331 1.18630 0.93373 0.93392 1.11497 1.20370 0.93668 0.95795 0.97916 1.20137 0.99072 0.92157 1.09691 1.19384 0.91404 0.87090 0.91811 1.83987 1.35956 1.13654 1.74652 1.21308 0.92903 0.87216 1.45160 0.89167 1.25277 0.96808 0.98274 0.96210 1.70043 1.13163 1.25921 1.40775 0.85725 0.79422 0.80052 0.78301 1.19927 1.20289 1.19219 1.21101 0.94931 0.98738 1.10286 1.20486 0.97771 0.92307 0.96905 0.95420 0.92504 0.91907 0.94318 0.94456 0.78104 0.90647 0.91165 0.91944 0.91788 0.90779 0.91324 0.91574 0.89328 0.89300 0.89348 0.87552 0.86654 0.92093 0.85683 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 6.62 37.16 0.25 -1.38 16 2 C -0.09 -1.17 1.87 -90.62 -0.17 -1.34 16 3 H 0.12 1.96 5.83 -52.63 -0.31 1.65 16 4 C 0.08 0.79 6.10 37.16 0.23 1.02 16 5 O -0.56 -6.88 13.40 -35.23 -0.47 -7.35 16 6 C 0.16 1.54 2.65 -67.56 -0.18 1.36 16 7 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 8 C -0.14 -1.07 4.68 -26.62 -0.12 -1.20 16 9 C -0.12 -0.72 5.88 -26.69 -0.16 -0.87 16 10 C -0.14 -0.81 6.08 -26.61 -0.16 -0.97 16 11 C 0.11 0.75 6.33 -3.71 -0.02 0.73 16 12 N -0.62 -6.31 2.90 -165.17 -0.48 -6.79 16 13 C 0.50 6.84 6.53 -10.99 -0.07 6.77 16 14 O -0.49 -8.69 9.53 5.56 0.05 -8.64 16 15 C -0.08 -1.01 4.21 -29.04 -0.12 -1.13 16 16 C -0.17 -2.94 4.38 -104.57 -0.46 -3.40 16 17 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 18 C -0.19 -4.27 9.99 -39.40 -0.39 -4.66 16 19 C 0.16 3.97 6.65 -39.10 -0.26 3.71 16 20 O -0.18 -5.31 9.76 0.08 0.00 -5.31 16 21 C -0.39 -11.25 9.44 30.88 0.29 -10.96 16 22 H 0.09 2.42 5.30 -52.48 -0.28 2.14 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 24 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 25 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 29 C -0.23 -5.30 9.13 -39.39 -0.36 -5.66 16 30 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 31 H 0.03 0.34 6.87 -51.93 -0.36 -0.02 16 32 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 33 H 0.06 0.97 5.37 -51.93 -0.28 0.69 16 34 H 0.04 0.34 6.99 -51.93 -0.36 -0.02 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.37 2.61 9.12 45.56 0.42 3.03 16 37 H 0.07 0.69 6.28 -51.93 -0.33 0.37 16 38 H 0.07 0.48 7.05 -51.93 -0.37 0.11 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.54 5.96 -51.93 -0.31 0.23 16 45 H 0.09 0.94 8.02 -51.93 -0.42 0.53 16 46 H 0.09 0.92 7.48 -51.93 -0.39 0.53 16 47 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 48 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 49 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.13 2.88 5.72 -52.49 -0.30 2.58 16 51 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -35.19 393.12 -8.88 -44.06 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.06 Total: 7.24 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.58 Total: -19.96 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.28 Total: -32.08 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.42 Total: -21.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.19 -8.88 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463915.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.204 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds