Wall clock time and date at job start Wed Apr 1 2020 05:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47303 * 2 1 4 4 C 1.53002 * 109.47207 * 120.00342 * 2 1 3 5 5 O 1.42910 * 109.46696 * 294.99836 * 4 2 1 6 6 C 1.52999 * 109.47041 * 239.99660 * 2 1 3 7 7 H 1.08998 * 109.70073 * 187.22510 * 6 2 1 8 8 C 1.53191 * 109.59007 * 307.58723 * 6 2 1 9 9 C 1.53033 * 109.34124 * 174.43646 * 8 6 2 10 10 C 1.53044 * 109.53870 * 298.61753 * 9 8 6 11 11 C 1.53196 * 109.31374 * 61.36392 * 10 9 8 12 12 N 1.46924 * 108.77301 * 305.36669 * 11 10 9 13 13 C 1.34775 * 120.63190 * 233.62473 * 12 11 10 14 14 O 1.21278 * 120.00002 * 176.20603 * 13 12 11 15 15 C 1.50696 * 119.99779 * 356.21526 * 13 12 11 16 16 C 1.50698 * 109.47223 * 179.97438 * 15 13 12 17 17 C 1.38307 * 119.92989 * 269.72254 * 16 15 13 18 18 C 1.38094 * 120.06910 * 179.72331 * 17 16 15 19 19 C 1.38879 * 119.93437 * 0.54903 * 18 17 16 20 20 O 1.35744 * 120.07510 * 179.74934 * 19 18 17 21 21 C 1.34825 * 117.00612 * 185.96757 * 20 19 18 22 22 H 1.08008 * 119.99679 * 5.29522 * 21 20 19 23 23 C 1.38645 * 120.00508 * 185.29114 * 21 20 19 24 24 N 1.31558 * 120.00003 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00304 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47468 * 90.00060 * 25 23 21 27 27 H 1.48501 * 109.47106 * 210.00621 * 25 23 21 28 28 H 1.48506 * 109.46805 * 330.00191 * 25 23 21 29 29 C 1.38887 * 119.85569 * 359.72366 * 19 18 17 30 30 C 1.38091 * 119.93476 * 0.02562 * 29 19 18 31 31 H 1.09004 * 109.47438 * 191.58442 * 1 2 3 32 32 H 1.09007 * 109.46677 * 311.57783 * 1 2 3 33 33 H 1.08998 * 109.47016 * 71.57966 * 1 2 3 34 34 H 1.09000 * 109.47244 * 54.99206 * 4 2 1 35 35 H 1.08996 * 109.47151 * 175.00028 * 4 2 1 36 36 H 0.96703 * 113.99278 * 180.02562 * 5 4 2 37 37 H 1.08996 * 109.49815 * 54.46572 * 8 6 2 38 38 H 1.09002 * 109.49633 * 294.40409 * 8 6 2 39 39 H 1.09002 * 109.45953 * 58.63469 * 9 8 6 40 40 H 1.08998 * 109.46224 * 178.60991 * 9 8 6 41 41 H 1.09001 * 109.49653 * 181.31698 * 10 9 8 42 42 H 1.09002 * 109.49495 * 301.41103 * 10 9 8 43 43 H 1.08999 * 109.58553 * 65.15327 * 11 10 9 44 44 H 1.08996 * 109.58731 * 185.43943 * 11 10 9 45 45 H 1.09005 * 109.47148 * 299.99180 * 15 13 12 46 46 H 1.09002 * 109.47925 * 59.99555 * 15 13 12 47 47 H 1.08007 * 119.96177 * 0.02562 * 17 16 15 48 48 H 1.08004 * 120.03573 * 180.27638 * 18 17 16 49 49 H 0.97002 * 119.99872 * 180.02562 * 24 23 21 50 50 H 1.08001 * 120.03052 * 179.97438 * 29 19 18 51 51 H 1.07995 * 119.96802 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 0.0168 2.4131 6 6 2.0400 -0.7213 -1.2492 7 1 3.1223 -0.8366 -1.1908 8 6 1.3812 -2.1006 -1.3508 9 6 1.7871 -2.7602 -2.6707 10 6 1.2983 -1.9048 -3.8419 11 6 1.9561 -0.5231 -3.7694 12 7 1.6914 0.0577 -2.4461 13 6 1.1391 1.2818 -2.3314 14 8 0.8621 1.7219 -1.2358 15 6 0.8655 2.1034 -3.5647 16 6 0.2503 3.4198 -3.1651 17 6 -1.1243 3.5382 -3.0690 18 6 -1.6909 4.7415 -2.6975 19 6 -0.8794 5.8367 -2.4313 20 8 -1.4335 7.0223 -2.0708 21 6 -0.6004 8.0751 -1.9474 22 1 0.4411 7.9739 -2.2153 23 6 -1.0804 9.2877 -1.4767 24 7 -2.3487 9.4109 -1.1499 25 14 0.0739 10.7465 -1.3064 26 1 0.0800 11.5233 -2.5719 27 1 -0.3876 11.6157 -0.1942 28 1 1.4470 10.2602 -1.0174 29 6 0.5004 5.7161 -2.5341 30 6 1.0611 4.5087 -2.9010 31 1 -0.3634 -1.0067 0.2064 32 1 -0.3633 0.6821 0.7688 33 1 -0.3633 0.3247 -0.9750 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2055 36 1 1.9532 -0.3830 3.2440 37 1 0.2974 -1.9895 -1.3178 38 1 1.7086 -2.7224 -0.5176 39 1 2.8726 -2.8485 -2.7138 40 1 1.3392 -3.7519 -2.7339 41 1 1.5673 -2.3870 -4.7817 42 1 0.2152 -1.7955 -3.7854 43 1 3.0315 -0.6223 -3.9165 44 1 1.5393 0.1211 -4.5435 45 1 1.8003 2.2851 -4.0951 46 1 0.1774 1.5640 -4.2156 47 1 -1.7551 2.6872 -3.2801 48 1 -2.7642 4.8322 -2.6183 49 1 -2.6846 10.2593 -0.8209 50 1 1.1341 6.5660 -2.3281 51 1 2.1340 4.4142 -2.9808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855463915.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:18 Heat of formation + Delta-G solvation = -90.950296 kcal Electronic energy + Delta-G solvation = -31436.748708 eV Core-core repulsion = 27301.665276 eV Total energy + Delta-G solvation = -4135.083432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96206 -40.71315 -38.87297 -37.97758 -37.86107 -35.26921 -34.34762 -33.73493 -32.50409 -31.76824 -30.35171 -28.36372 -27.51052 -27.12195 -25.56900 -24.60022 -23.62788 -22.62418 -21.75297 -21.09364 -19.85200 -19.60690 -18.81679 -18.39593 -17.59447 -16.98586 -16.79569 -16.33779 -16.22805 -16.20244 -15.82745 -15.52379 -15.41432 -15.19104 -14.96923 -14.84313 -14.57502 -14.43224 -14.22883 -14.13326 -13.95104 -13.62253 -13.43872 -13.20259 -12.95801 -12.84134 -12.63479 -12.46259 -12.37449 -12.25859 -12.19558 -12.12397 -11.87193 -11.67304 -11.55971 -11.39622 -11.27227 -11.19992 -10.85145 -10.79402 -9.85492 -9.75844 -9.36079 -8.87656 -8.47816 -6.15895 0.61899 0.68853 1.32839 1.42930 1.51136 1.79862 2.09600 2.17211 2.83059 3.15624 3.33149 3.51683 3.81275 3.85474 3.92127 3.99118 4.05264 4.12529 4.16512 4.20444 4.22633 4.28722 4.37438 4.41918 4.47765 4.52808 4.59938 4.66576 4.70422 4.73973 4.79519 4.81115 4.89425 5.01694 5.05350 5.08289 5.12468 5.13225 5.16306 5.25263 5.28694 5.31521 5.41771 5.51166 5.57545 5.59417 5.72293 5.79189 5.85607 6.02430 6.23462 6.57112 6.94782 6.96743 7.42911 7.78760 8.75997 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002490 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.469291 B =11243.325577 C =12201.583735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.091 4.091 3 H 0.076 0.924 4 C 0.076 3.924 5 O -0.597 6.597 6 C 0.158 3.842 7 H 0.083 0.917 8 C -0.133 4.133 9 C -0.117 4.117 10 C -0.134 4.134 11 C 0.100 3.900 12 N -0.608 5.608 13 C 0.499 3.501 14 O -0.547 6.547 15 C -0.078 4.078 16 C -0.139 4.139 17 C -0.057 4.057 18 C -0.206 4.206 19 C 0.112 3.888 20 O -0.235 6.235 21 C -0.413 4.413 22 H 0.099 0.901 23 C -0.025 4.025 24 N -0.923 5.923 25 Si 1.020 2.980 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.255 1.255 29 C -0.243 4.243 30 C -0.060 4.060 31 H 0.044 0.956 32 H 0.014 0.986 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.143 0.857 48 H 0.110 0.890 49 H 0.273 0.727 50 H 0.115 0.885 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.283 -29.831 -5.944 33.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.002 4.002 5 O -0.405 6.405 6 C 0.055 3.945 7 H 0.101 0.899 8 C -0.171 4.171 9 C -0.154 4.154 10 C -0.172 4.172 11 C -0.022 4.022 12 N -0.342 5.342 13 C 0.289 3.711 14 O -0.425 6.425 15 C -0.118 4.118 16 C -0.140 4.140 17 C -0.075 4.075 18 C -0.226 4.226 19 C 0.062 3.938 20 O -0.142 6.142 21 C -0.489 4.489 22 H 0.117 0.883 23 C -0.222 4.222 24 N -0.561 5.561 25 Si 0.839 3.161 26 H -0.184 1.184 27 H -0.195 1.195 28 H -0.178 1.178 29 C -0.262 4.262 30 C -0.078 4.078 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.161 0.839 48 H 0.128 0.872 49 H 0.082 0.918 50 H 0.133 0.867 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.509 -29.010 -5.705 32.506 hybrid contribution 0.080 0.903 1.036 1.377 sum 13.589 -28.107 -4.668 31.567 Atomic orbital electron populations 1.21662 0.95472 0.98299 1.00392 1.21587 0.96589 1.00255 0.92533 0.90570 1.22444 0.98378 0.94137 0.85267 1.86543 1.81944 1.54421 1.17601 1.21192 0.98948 0.90959 0.83393 0.89891 1.22089 1.00870 0.94597 0.99551 1.21517 1.01824 0.98861 0.93208 1.21928 1.00455 0.94925 0.99866 1.22054 1.01825 0.95471 0.82807 1.48172 1.62075 1.16043 1.07958 1.21008 0.77015 0.81908 0.91217 1.90850 1.51200 1.71941 1.28522 1.20584 1.03916 0.91516 0.95753 1.19232 0.92831 0.95187 1.06774 1.20819 0.95026 0.95255 0.96392 1.20417 0.98989 0.92954 1.10191 1.19921 0.93091 0.86979 0.93807 1.83942 1.37350 1.15163 1.77709 1.21803 0.93428 0.87964 1.45725 0.88348 1.26627 0.98767 1.01359 0.95452 1.70194 1.15637 1.27072 1.43205 0.84577 0.77173 0.75498 0.78864 1.18412 1.19520 1.17840 1.21212 0.93939 1.00159 1.10906 1.20890 0.99760 0.91290 0.95831 0.93752 0.96657 0.93231 0.92155 0.92533 0.75781 0.92316 0.89832 0.90693 0.90825 0.88513 0.92453 0.89623 0.87969 0.85962 0.85904 0.83926 0.87199 0.91837 0.86695 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 6.62 71.98 0.48 -2.45 16 2 C -0.09 -2.24 1.87 -10.79 -0.02 -2.26 16 3 H 0.08 2.58 5.83 -13.49 -0.08 2.50 16 4 C 0.08 1.46 6.10 71.98 0.44 1.90 16 5 O -0.60 -14.45 13.40 -148.98 -2.00 -16.45 16 6 C 0.16 2.63 2.65 44.96 0.12 2.75 16 7 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 8 C -0.13 -1.59 4.68 30.67 0.14 -1.45 16 9 C -0.12 -0.86 5.88 30.62 0.18 -0.68 16 10 C -0.13 -0.93 6.08 30.67 0.19 -0.74 16 11 C 0.10 0.87 6.33 86.36 0.55 1.41 16 12 N -0.61 -10.31 2.90 -794.86 -2.30 -12.61 16 13 C 0.50 12.28 6.53 87.66 0.57 12.85 16 14 O -0.55 -19.07 9.53 -3.02 -0.03 -19.10 16 15 C -0.08 -1.65 4.21 29.10 0.12 -1.52 16 16 C -0.14 -4.58 4.38 -19.83 -0.09 -4.67 16 17 C -0.06 -2.08 9.69 22.25 0.22 -1.87 16 18 C -0.21 -9.61 9.99 22.39 0.22 -9.38 16 19 C 0.11 6.04 6.65 22.58 0.15 6.19 16 20 O -0.23 -15.06 9.76 -22.63 -0.22 -15.28 16 21 C -0.41 -25.43 9.44 67.92 0.64 -24.79 16 22 H 0.10 5.60 5.30 -2.91 -0.02 5.58 16 23 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 24 N -0.92 -59.12 13.67 21.61 0.30 -58.83 16 25 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 29 C -0.24 -11.54 9.13 22.39 0.20 -11.34 16 30 C -0.06 -2.24 9.69 22.25 0.22 -2.02 16 31 H 0.04 1.07 6.87 -2.38 -0.02 1.05 16 32 H 0.01 0.53 8.12 -2.38 -0.02 0.51 16 33 H 0.05 1.53 5.37 -2.39 -0.01 1.52 16 34 H 0.06 0.90 6.99 -2.39 -0.02 0.88 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.39 5.23 9.12 -74.06 -0.68 4.55 16 37 H 0.06 0.92 6.28 -2.39 -0.01 0.91 16 38 H 0.08 0.79 7.05 -2.39 -0.02 0.78 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.10 0.63 5.96 -2.39 -0.01 0.61 16 45 H 0.12 1.87 8.02 -2.38 -0.02 1.85 16 46 H 0.12 1.83 7.48 -2.39 -0.02 1.82 16 47 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 48 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 49 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 50 H 0.12 5.56 5.72 -2.91 -0.02 5.55 16 51 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -87.02 393.12 2.78 -84.24 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.21 Total: 30.19 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 4.80 Total: -39.08 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -2.01 Total: -71.44 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -2.25 Total: -50.83 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -87.02 2.78 -84.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463915.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.705 kcal (2) G-P(sol) polarization free energy of solvation -87.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds