Wall clock time and date at job start Wed Apr 1 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.53005 * 109.46948 * 119.99579 * 2 1 3 5 5 O 1.42894 * 109.47303 * 296.09411 * 4 2 1 6 6 C 1.52998 * 109.47177 * 239.99737 * 2 1 3 7 7 H 1.08997 * 109.58511 * 54.95074 * 6 2 1 8 8 C 1.53198 * 109.58604 * 294.67077 * 6 2 1 9 9 C 1.53039 * 109.31192 * 185.57689 * 8 6 2 10 10 C 1.53047 * 109.53729 * 61.36661 * 9 8 6 11 11 C 1.53193 * 109.30957 * 298.63397 * 10 9 8 12 12 N 1.46920 * 109.58439 * 175.23988 * 6 2 1 13 13 C 1.34777 * 120.63367 * 353.39795 * 12 6 2 14 14 O 1.21283 * 119.99942 * 354.26112 * 13 12 6 15 15 C 1.50700 * 119.99820 * 174.27376 * 13 12 6 16 16 C 1.50708 * 109.46675 * 179.97438 * 15 13 12 17 17 C 1.38301 * 119.93017 * 269.71964 * 16 15 13 18 18 C 1.38099 * 120.06827 * 179.72365 * 17 16 15 19 19 C 1.38877 * 119.93044 * 0.55457 * 18 17 16 20 20 O 1.35748 * 120.07175 * 179.74629 * 19 18 17 21 21 C 1.34828 * 117.00424 * 186.12188 * 20 19 18 22 22 H 1.08001 * 119.99560 * 5.64712 * 21 20 19 23 23 C 1.38652 * 120.00407 * 185.65467 * 21 20 19 24 24 N 1.31555 * 119.99842 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00166 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47430 * 89.99808 * 25 23 21 27 27 H 1.48502 * 109.47291 * 209.99791 * 25 23 21 28 28 H 1.48506 * 109.47195 * 329.99787 * 25 23 21 29 29 C 1.38884 * 119.86208 * 359.72232 * 19 18 17 30 30 C 1.38100 * 119.92819 * 0.02562 * 29 19 18 31 31 H 1.09006 * 109.47270 * 295.20608 * 1 2 3 32 32 H 1.09003 * 109.46853 * 175.21098 * 1 2 3 33 33 H 1.08997 * 109.47040 * 55.20810 * 1 2 3 34 34 H 1.09001 * 109.47011 * 56.09140 * 4 2 1 35 35 H 1.09004 * 109.47268 * 176.09218 * 4 2 1 36 36 H 0.96704 * 113.99805 * 180.02562 * 5 4 2 37 37 H 1.09005 * 109.49792 * 305.52934 * 8 6 2 38 38 H 1.09001 * 109.49571 * 65.59210 * 8 6 2 39 39 H 1.08995 * 109.45929 * 181.38207 * 9 8 6 40 40 H 1.09000 * 109.46211 * 301.35958 * 9 8 6 41 41 H 1.08996 * 109.49994 * 58.58299 * 10 9 8 42 42 H 1.09002 * 109.49513 * 178.68344 * 10 9 8 43 43 H 1.09005 * 109.58226 * 174.42387 * 11 10 9 44 44 H 1.08993 * 109.58665 * 294.70402 * 11 10 9 45 45 H 1.09002 * 109.47143 * 299.99232 * 15 13 12 46 46 H 1.08995 * 109.47856 * 59.99832 * 15 13 12 47 47 H 1.08001 * 119.96497 * 0.02562 * 17 16 15 48 48 H 1.07997 * 120.03231 * 180.27615 * 18 17 16 49 49 H 0.96997 * 120.00056 * 179.97438 * 24 23 21 50 50 H 1.07998 * 120.03600 * 180.02562 * 29 19 18 51 51 H 1.08003 * 119.96391 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6401 0.0034 2.4142 6 6 2.0400 -0.7213 -1.2492 7 1 1.6058 -0.2638 -2.1381 8 6 1.6432 -2.1997 -1.1866 9 6 2.2734 -2.9433 -2.3664 10 6 3.7982 -2.8482 -2.2757 11 6 4.2194 -1.3772 -2.3507 12 7 3.5047 -0.6241 -1.3105 13 6 4.1799 0.1382 -0.4276 14 8 3.5748 0.8330 0.3610 15 6 5.6869 0.1273 -0.4205 16 6 6.1908 1.0580 0.6525 17 6 6.4374 2.3857 0.3542 18 6 6.8937 3.2424 1.3365 19 6 7.1161 2.7667 2.6222 20 8 7.5696 3.6051 3.5887 21 6 7.8848 3.0544 4.7783 22 1 7.8592 1.9816 4.9004 23 6 8.2416 3.8652 5.8450 24 7 8.2730 5.1719 5.6961 25 14 8.6776 3.1022 7.4933 26 1 10.1353 2.8231 7.5395 27 1 8.3189 4.0431 8.5847 28 1 7.9250 1.8336 7.6661 29 6 6.8730 1.4315 2.9171 30 6 6.4117 0.5811 1.9317 31 1 -0.3634 0.4377 0.9299 32 1 -0.3633 -1.0241 -0.0858 33 1 -0.3633 0.5864 -0.8439 34 1 1.6205 -1.7266 1.2851 35 1 3.1278 -0.7823 1.2151 36 1 1.9301 -0.3971 3.2453 37 1 1.9991 -2.6326 -0.2516 38 1 0.5580 -2.2875 -1.2383 39 1 1.9726 -3.9905 -2.3380 40 1 1.9367 -2.4939 -3.3006 41 1 4.1338 -3.2749 -1.3306 42 1 4.2468 -3.3977 -3.1033 43 1 5.2941 -1.2961 -2.1875 44 1 3.9674 -0.9745 -3.3316 45 1 6.0420 -0.8838 -0.2210 46 1 6.0573 0.4576 -1.3908 47 1 6.2681 2.7541 -0.6469 48 1 7.0818 4.2801 1.1040 49 1 8.5223 5.7392 6.4424 50 1 7.0446 1.0587 3.9161 51 1 6.2221 -0.4573 2.1605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855463916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:24 Heat of formation + Delta-G solvation = -66.325085 kcal Electronic energy + Delta-G solvation = -31764.606613 eV Core-core repulsion = 27630.591011 eV Total energy + Delta-G solvation = -4134.015603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.09967 -38.97782 -37.65598 -36.90452 -36.30593 -34.27444 -33.04164 -32.36850 -31.13722 -30.09238 -29.72778 -26.97487 -26.16531 -25.36980 -24.77156 -23.88559 -21.91748 -21.45567 -20.86972 -19.97025 -18.78281 -17.92805 -17.29626 -16.89597 -16.72420 -16.08814 -15.91280 -15.12039 -14.76451 -14.65035 -14.50603 -14.43793 -14.23676 -13.79471 -13.67808 -13.51986 -13.42348 -13.36043 -13.05154 -12.81662 -12.63924 -12.50822 -12.35813 -12.01353 -11.81848 -11.66370 -11.49933 -11.35094 -11.26792 -11.19780 -10.97648 -10.80121 -10.73964 -10.65966 -10.53164 -10.40736 -10.37943 -9.54008 -9.30792 -8.83947 -8.72345 -8.56700 -8.09020 -7.10066 -6.39987 -3.98445 2.30498 2.31358 2.74350 2.94349 3.15900 3.16853 3.21476 4.00886 4.23429 4.40521 4.48541 4.52652 4.58987 4.72651 4.87681 4.96000 5.00991 5.14199 5.14885 5.17235 5.24776 5.28776 5.34624 5.36213 5.38330 5.44069 5.52947 5.53712 5.62862 5.65128 5.70813 5.71532 5.76342 5.80862 5.88829 5.90976 5.98671 6.11704 6.24044 6.27939 6.37737 6.47737 6.73013 6.76026 6.97145 7.11206 7.29174 7.39253 7.42190 7.50608 7.89387 7.89994 8.05212 8.36917 9.05749 9.77276 10.78336 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002605 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.329630 B =10747.831254 C =11452.825240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.127 0.873 4 C 0.096 3.904 5 O -0.564 6.564 6 C 0.157 3.843 7 H 0.072 0.928 8 C -0.138 4.138 9 C -0.119 4.119 10 C -0.136 4.136 11 C 0.108 3.892 12 N -0.620 5.620 13 C 0.503 3.497 14 O -0.493 6.493 15 C -0.081 4.081 16 C -0.168 4.168 17 C -0.059 4.059 18 C -0.191 4.191 19 C 0.157 3.843 20 O -0.179 6.179 21 C -0.390 4.390 22 H 0.091 0.909 23 C 0.038 3.962 24 N -0.863 5.863 25 Si 0.940 3.060 26 H -0.274 1.274 27 H -0.278 1.278 28 H -0.268 1.268 29 C -0.231 4.231 30 C -0.056 4.056 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.054 0.946 36 H 0.372 0.628 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.116 0.884 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -18.167 -17.207 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.144 0.856 4 C 0.018 3.982 5 O -0.368 6.368 6 C 0.053 3.947 7 H 0.090 0.910 8 C -0.176 4.176 9 C -0.157 4.157 10 C -0.175 4.175 11 C -0.015 4.015 12 N -0.356 5.356 13 C 0.292 3.708 14 O -0.367 6.367 15 C -0.121 4.121 16 C -0.169 4.169 17 C -0.077 4.077 18 C -0.210 4.210 19 C 0.103 3.897 20 O -0.082 6.082 21 C -0.466 4.466 22 H 0.108 0.892 23 C -0.166 4.166 24 N -0.498 5.498 25 Si 0.765 3.235 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.192 1.192 29 C -0.250 4.250 30 C -0.075 4.075 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.218 0.782 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.125 0.875 48 H 0.134 0.866 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.301 -16.919 -17.065 26.555 hybrid contribution 0.401 -1.036 1.141 1.592 sum -10.900 -17.954 -15.925 26.358 Atomic orbital electron populations 1.21920 0.95716 1.00875 1.02096 1.21779 0.94550 1.04143 0.91350 0.85597 1.22416 0.98478 0.91725 0.85554 1.86466 1.80020 1.54455 1.15873 1.21218 0.79659 0.95198 0.98578 0.90998 1.22132 1.00966 0.95300 0.99224 1.21513 0.95191 1.00441 0.98535 1.21932 0.96491 0.96307 1.02736 1.21722 0.97400 0.91251 0.91176 1.48229 1.06471 1.48257 1.32627 1.20992 0.90469 0.79421 0.79873 1.90797 1.68137 1.39369 1.38433 1.20485 0.91241 1.00565 0.99763 1.18619 1.09890 0.94203 0.94174 1.20377 0.97383 0.92411 0.97563 1.20144 1.09612 1.00004 0.91254 1.19383 0.91076 0.89608 0.89594 1.83992 1.70521 1.33629 1.20080 1.21299 1.46440 0.92931 0.85929 0.89191 1.25280 0.96964 0.95286 0.99033 1.70039 1.44524 1.03046 1.32236 0.85725 0.78922 0.78685 0.80160 1.19932 1.20279 1.19233 1.21086 1.09561 0.94132 1.00212 1.20452 0.96953 0.97868 0.92210 0.91665 0.93487 0.93219 0.96183 0.92850 0.78241 0.91167 0.90655 0.91770 0.91823 0.91416 0.90743 0.89381 0.91470 0.89378 0.89254 0.87502 0.86631 0.92072 0.85711 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.00 37.16 0.33 -1.30 16 2 C -0.10 -1.27 1.88 -90.62 -0.17 -1.44 16 3 H 0.13 2.08 5.69 -53.17 -0.30 1.78 16 4 C 0.10 1.30 4.69 37.16 0.17 1.47 16 5 O -0.56 -8.70 13.07 -35.32 -0.46 -9.17 16 6 C 0.16 1.54 2.65 -67.60 -0.18 1.36 16 7 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 8 C -0.14 -1.07 4.67 -26.61 -0.12 -1.20 16 9 C -0.12 -0.71 5.88 -26.69 -0.16 -0.87 16 10 C -0.14 -0.78 6.08 -26.61 -0.16 -0.94 16 11 C 0.11 0.73 6.35 -3.69 -0.02 0.71 16 12 N -0.62 -6.25 2.94 -165.19 -0.49 -6.74 16 13 C 0.50 6.73 6.16 -10.99 -0.07 6.66 16 14 O -0.49 -8.57 9.94 5.47 0.05 -8.52 16 15 C -0.08 -1.00 4.18 -29.03 -0.12 -1.13 16 16 C -0.17 -2.90 4.38 -104.57 -0.46 -3.36 16 17 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 18 C -0.19 -4.22 9.99 -39.40 -0.39 -4.62 16 19 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 20 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 21 C -0.39 -11.15 9.44 30.89 0.29 -10.86 16 22 H 0.09 2.38 5.31 -52.49 -0.28 2.11 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 24 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 25 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 29 C -0.23 -5.20 9.13 -39.39 -0.36 -5.56 16 30 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 31 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 32 H 0.05 0.44 6.50 -51.93 -0.34 0.10 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.24 6.47 -51.93 -0.34 -0.10 16 35 H 0.05 0.81 5.06 -51.93 -0.26 0.54 16 36 H 0.37 4.39 9.12 45.56 0.42 4.80 16 37 H 0.07 0.62 6.13 -51.93 -0.32 0.30 16 38 H 0.07 0.53 6.76 -51.93 -0.35 0.18 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.52 5.93 -51.93 -0.31 0.21 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.91 7.86 -51.93 -0.41 0.51 16 46 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 47 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 48 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 49 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.13 2.82 5.73 -52.49 -0.30 2.52 16 51 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -34.56 391.61 -8.74 -43.30 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.95 Total: 9.02 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.54 Total: -19.33 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.27 Total: -31.85 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.41 Total: -22.94 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.56 -8.74 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.026 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds