Wall clock time and date at job start Wed Apr 1 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.53005 * 109.46948 * 119.99579 * 2 1 3 5 5 O 1.42894 * 109.47303 * 296.09411 * 4 2 1 6 6 C 1.52998 * 109.47177 * 239.99737 * 2 1 3 7 7 H 1.08997 * 109.58511 * 54.95074 * 6 2 1 8 8 C 1.53198 * 109.58604 * 294.67077 * 6 2 1 9 9 C 1.53039 * 109.31192 * 185.57689 * 8 6 2 10 10 C 1.53047 * 109.53729 * 61.36661 * 9 8 6 11 11 C 1.53193 * 109.30957 * 298.63397 * 10 9 8 12 12 N 1.46920 * 109.58439 * 175.23988 * 6 2 1 13 13 C 1.34777 * 120.63367 * 353.39795 * 12 6 2 14 14 O 1.21283 * 119.99942 * 354.26112 * 13 12 6 15 15 C 1.50700 * 119.99820 * 174.27376 * 13 12 6 16 16 C 1.50708 * 109.46675 * 179.97438 * 15 13 12 17 17 C 1.38301 * 119.93017 * 269.71964 * 16 15 13 18 18 C 1.38099 * 120.06827 * 179.72365 * 17 16 15 19 19 C 1.38877 * 119.93044 * 0.55457 * 18 17 16 20 20 O 1.35748 * 120.07175 * 179.74629 * 19 18 17 21 21 C 1.34828 * 117.00424 * 186.12188 * 20 19 18 22 22 H 1.08001 * 119.99560 * 5.64712 * 21 20 19 23 23 C 1.38652 * 120.00407 * 185.65467 * 21 20 19 24 24 N 1.31555 * 119.99842 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00166 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47430 * 89.99808 * 25 23 21 27 27 H 1.48502 * 109.47291 * 209.99791 * 25 23 21 28 28 H 1.48506 * 109.47195 * 329.99787 * 25 23 21 29 29 C 1.38884 * 119.86208 * 359.72232 * 19 18 17 30 30 C 1.38100 * 119.92819 * 0.02562 * 29 19 18 31 31 H 1.09006 * 109.47270 * 295.20608 * 1 2 3 32 32 H 1.09003 * 109.46853 * 175.21098 * 1 2 3 33 33 H 1.08997 * 109.47040 * 55.20810 * 1 2 3 34 34 H 1.09001 * 109.47011 * 56.09140 * 4 2 1 35 35 H 1.09004 * 109.47268 * 176.09218 * 4 2 1 36 36 H 0.96704 * 113.99805 * 180.02562 * 5 4 2 37 37 H 1.09005 * 109.49792 * 305.52934 * 8 6 2 38 38 H 1.09001 * 109.49571 * 65.59210 * 8 6 2 39 39 H 1.08995 * 109.45929 * 181.38207 * 9 8 6 40 40 H 1.09000 * 109.46211 * 301.35958 * 9 8 6 41 41 H 1.08996 * 109.49994 * 58.58299 * 10 9 8 42 42 H 1.09002 * 109.49513 * 178.68344 * 10 9 8 43 43 H 1.09005 * 109.58226 * 174.42387 * 11 10 9 44 44 H 1.08993 * 109.58665 * 294.70402 * 11 10 9 45 45 H 1.09002 * 109.47143 * 299.99232 * 15 13 12 46 46 H 1.08995 * 109.47856 * 59.99832 * 15 13 12 47 47 H 1.08001 * 119.96497 * 0.02562 * 17 16 15 48 48 H 1.07997 * 120.03231 * 180.27615 * 18 17 16 49 49 H 0.96997 * 120.00056 * 179.97438 * 24 23 21 50 50 H 1.07998 * 120.03600 * 180.02562 * 29 19 18 51 51 H 1.08003 * 119.96391 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6401 0.0034 2.4142 6 6 2.0400 -0.7213 -1.2492 7 1 1.6058 -0.2638 -2.1381 8 6 1.6432 -2.1997 -1.1866 9 6 2.2734 -2.9433 -2.3664 10 6 3.7982 -2.8482 -2.2757 11 6 4.2194 -1.3772 -2.3507 12 7 3.5047 -0.6241 -1.3105 13 6 4.1799 0.1382 -0.4276 14 8 3.5748 0.8330 0.3610 15 6 5.6869 0.1273 -0.4205 16 6 6.1908 1.0580 0.6525 17 6 6.4374 2.3857 0.3542 18 6 6.8937 3.2424 1.3365 19 6 7.1161 2.7667 2.6222 20 8 7.5696 3.6051 3.5887 21 6 7.8848 3.0544 4.7783 22 1 7.8592 1.9816 4.9004 23 6 8.2416 3.8652 5.8450 24 7 8.2730 5.1719 5.6961 25 14 8.6776 3.1022 7.4933 26 1 10.1353 2.8231 7.5395 27 1 8.3189 4.0431 8.5847 28 1 7.9250 1.8336 7.6661 29 6 6.8730 1.4315 2.9171 30 6 6.4117 0.5811 1.9317 31 1 -0.3634 0.4377 0.9299 32 1 -0.3633 -1.0241 -0.0858 33 1 -0.3633 0.5864 -0.8439 34 1 1.6205 -1.7266 1.2851 35 1 3.1278 -0.7823 1.2151 36 1 1.9301 -0.3971 3.2453 37 1 1.9991 -2.6326 -0.2516 38 1 0.5580 -2.2875 -1.2383 39 1 1.9726 -3.9905 -2.3380 40 1 1.9367 -2.4939 -3.3006 41 1 4.1338 -3.2749 -1.3306 42 1 4.2468 -3.3977 -3.1033 43 1 5.2941 -1.2961 -2.1875 44 1 3.9674 -0.9745 -3.3316 45 1 6.0420 -0.8838 -0.2210 46 1 6.0573 0.4576 -1.3908 47 1 6.2681 2.7541 -0.6469 48 1 7.0818 4.2801 1.1040 49 1 8.5223 5.7392 6.4424 50 1 7.0446 1.0587 3.9161 51 1 6.2221 -0.4573 2.1605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855463916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:22 Heat of formation + Delta-G solvation = -90.292648 kcal Electronic energy + Delta-G solvation = -31765.645925 eV Core-core repulsion = 27630.591011 eV Total energy + Delta-G solvation = -4135.054914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.01189 -40.70831 -38.83059 -37.94603 -37.77787 -35.23069 -34.35729 -33.76540 -32.56590 -31.76394 -30.41584 -28.40246 -27.25995 -27.06283 -25.70210 -24.63559 -23.62382 -22.62343 -21.76970 -21.07402 -19.85400 -19.63410 -18.80936 -18.37465 -17.60397 -17.03347 -16.94283 -16.40189 -16.24267 -15.99463 -15.81763 -15.50184 -15.27632 -15.11064 -14.98772 -14.71731 -14.43771 -14.37608 -14.30621 -14.08183 -13.86887 -13.56955 -13.50556 -13.40863 -12.96072 -12.85466 -12.72449 -12.50813 -12.39192 -12.26137 -12.23795 -12.12283 -11.97324 -11.80335 -11.55228 -11.35936 -11.33210 -11.20547 -10.79031 -10.58403 -9.82009 -9.75105 -9.39485 -8.87206 -8.47290 -6.15344 0.62534 0.69366 1.33293 1.43283 1.51504 1.77315 2.10166 2.17537 2.83850 3.17104 3.38532 3.52536 3.73805 3.82058 3.86744 4.00941 4.05342 4.11895 4.19911 4.21807 4.22568 4.31131 4.36647 4.45289 4.47154 4.54113 4.60275 4.67592 4.69882 4.73105 4.80739 4.85663 4.90823 4.96612 5.05003 5.08494 5.12906 5.13134 5.15458 5.24785 5.26990 5.31265 5.36596 5.47841 5.52283 5.58073 5.72785 5.79304 5.84315 6.02916 6.23912 6.56127 6.91178 6.97308 7.41701 7.79554 8.76546 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002605 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.329630 B =10747.831254 C =11452.825240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.098 3.902 5 O -0.591 6.591 6 C 0.158 3.842 7 H 0.082 0.918 8 C -0.133 4.133 9 C -0.117 4.117 10 C -0.133 4.133 11 C 0.099 3.901 12 N -0.611 5.611 13 C 0.501 3.499 14 O -0.544 6.544 15 C -0.079 4.079 16 C -0.139 4.139 17 C -0.057 4.057 18 C -0.207 4.207 19 C 0.112 3.888 20 O -0.235 6.235 21 C -0.412 4.412 22 H 0.100 0.900 23 C -0.025 4.025 24 N -0.923 5.923 25 Si 1.020 2.980 26 H -0.260 1.260 27 H -0.271 1.271 28 H -0.254 1.254 29 C -0.241 4.241 30 C -0.058 4.058 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.383 0.617 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.144 0.856 48 H 0.110 0.890 49 H 0.272 0.728 50 H 0.115 0.885 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 -22.396 -20.154 32.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.021 3.979 5 O -0.397 6.397 6 C 0.055 3.945 7 H 0.099 0.901 8 C -0.171 4.171 9 C -0.155 4.155 10 C -0.171 4.171 11 C -0.023 4.023 12 N -0.345 5.345 13 C 0.290 3.710 14 O -0.422 6.422 15 C -0.119 4.119 16 C -0.140 4.140 17 C -0.075 4.075 18 C -0.226 4.226 19 C 0.062 3.938 20 O -0.142 6.142 21 C -0.488 4.488 22 H 0.117 0.883 23 C -0.222 4.222 24 N -0.561 5.561 25 Si 0.839 3.161 26 H -0.185 1.185 27 H -0.196 1.196 28 H -0.177 1.177 29 C -0.260 4.260 30 C -0.076 4.076 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.230 0.770 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.161 0.839 48 H 0.128 0.872 49 H 0.081 0.919 50 H 0.133 0.867 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.024 -21.224 -20.098 31.606 hybrid contribution 0.461 0.111 1.696 1.761 sum -11.563 -21.112 -18.402 30.299 Atomic orbital electron populations 1.21855 0.94767 1.02139 1.01299 1.21646 0.95374 1.02167 0.92559 0.89692 1.22474 0.97702 0.92498 0.85250 1.86442 1.80365 1.55753 1.17170 1.21235 0.79563 0.96480 0.97238 0.90050 1.22089 1.01677 0.93551 0.99763 1.21520 0.95299 1.00802 0.97835 1.21927 0.96324 0.95544 1.03312 1.22063 0.97945 0.91582 0.90671 1.48243 1.06692 1.47321 1.32267 1.21038 0.90658 0.79360 0.79913 1.90844 1.69036 1.41702 1.40642 1.20593 0.90839 1.01020 0.99406 1.19214 1.05541 0.94420 0.94835 1.20831 0.95789 0.92645 0.98274 1.20422 1.10234 1.00675 0.91256 1.19923 0.93142 0.90701 0.90011 1.83947 1.73573 1.35495 1.21182 1.21795 1.46965 0.93680 0.86385 0.88314 1.26625 0.96579 0.95754 1.03264 1.70192 1.47212 1.04936 1.33794 0.84578 0.79248 0.78110 0.74193 1.18496 1.19595 1.17727 1.21195 1.10146 0.93747 1.00960 1.20850 0.95711 0.99002 0.92062 0.94051 0.91402 0.92155 0.94272 0.94301 0.76975 0.92213 0.89813 0.90730 0.90912 0.92126 0.88541 0.87905 0.89860 0.86136 0.85766 0.83856 0.87234 0.91858 0.86690 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.00 71.98 0.65 -2.36 16 2 C -0.10 -2.43 1.88 -10.79 -0.02 -2.45 16 3 H 0.09 2.86 5.69 -22.10 -0.13 2.73 16 4 C 0.10 2.58 4.69 71.98 0.34 2.92 16 5 O -0.59 -18.61 13.07 -148.90 -1.95 -20.55 16 6 C 0.16 2.67 2.65 44.98 0.12 2.78 16 7 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.13 -1.58 4.67 30.67 0.14 -1.44 16 9 C -0.12 -0.85 5.88 30.62 0.18 -0.67 16 10 C -0.13 -0.85 6.08 30.67 0.19 -0.67 16 11 C 0.10 0.83 6.35 86.36 0.55 1.38 16 12 N -0.61 -10.10 2.94 -794.93 -2.34 -12.44 16 13 C 0.50 11.92 6.16 87.66 0.54 12.46 16 14 O -0.54 -18.47 9.94 -2.95 -0.03 -18.50 16 15 C -0.08 -1.61 4.18 29.10 0.12 -1.48 16 16 C -0.14 -4.45 4.38 -19.83 -0.09 -4.54 16 17 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 18 C -0.21 -9.49 9.99 22.39 0.22 -9.27 16 19 C 0.11 5.97 6.65 22.58 0.15 6.12 16 20 O -0.24 -14.93 9.76 -22.70 -0.22 -15.15 16 21 C -0.41 -25.09 9.44 67.92 0.64 -24.45 16 22 H 0.10 5.53 5.31 -2.91 -0.02 5.52 16 23 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 24 N -0.92 -58.77 13.67 21.61 0.30 -58.47 16 25 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 29 C -0.24 -11.21 9.13 22.39 0.20 -11.01 16 30 C -0.06 -2.12 9.69 22.25 0.22 -1.90 16 31 H 0.04 1.06 7.66 -2.38 -0.02 1.04 16 32 H 0.07 1.12 6.50 -2.39 -0.02 1.10 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.86 6.47 -2.39 -0.02 0.84 16 35 H 0.04 1.13 5.06 -2.38 -0.01 1.12 16 36 H 0.38 9.27 9.12 -74.05 -0.68 8.60 16 37 H 0.06 0.86 6.13 -2.38 -0.01 0.84 16 38 H 0.08 0.87 6.76 -2.39 -0.02 0.86 16 39 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.10 0.59 5.93 -2.38 -0.01 0.57 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 45 H 0.12 1.77 7.86 -2.39 -0.02 1.76 16 46 H 0.12 1.76 7.66 -2.39 -0.02 1.74 16 47 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 48 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 49 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 50 H 0.12 5.44 5.73 -2.91 -0.02 5.43 16 51 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -84.50 391.61 2.79 -81.71 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.17 Total: 34.42 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 4.83 Total: -37.45 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -2.04 Total: -70.91 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -2.20 Total: -54.20 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -84.50 2.79 -81.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855463916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.581 kcal (2) G-P(sol) polarization free energy of solvation -84.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds