Wall clock time and date at job start Wed Apr 1 2020 04:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.49374 * 2 1 4 4 C 1.53039 * 109.50358 * 120.09556 * 2 1 3 5 5 C 1.53034 * 109.54366 * 181.31747 * 4 2 1 6 6 C 1.53629 * 109.24210 * 298.51345 * 5 4 2 7 7 N 1.46927 * 108.54036 * 54.85557 * 6 5 4 8 8 C 1.34775 * 120.62961 * 126.37145 * 7 6 5 9 9 O 1.21283 * 119.99807 * 181.12380 * 8 7 6 10 10 C 1.50699 * 120.00028 * 1.12477 * 8 7 6 11 11 C 1.50705 * 109.47106 * 179.97438 * 10 8 7 12 12 C 1.38303 * 119.92592 * 90.00281 * 11 10 8 13 13 C 1.38100 * 120.06656 * 180.02562 * 12 11 10 14 14 C 1.38882 * 119.93180 * 359.97438 * 13 12 11 15 15 O 1.35747 * 120.07161 * 180.02562 * 14 13 12 16 16 C 1.34839 * 116.99775 * 6.47005 * 15 14 13 17 17 H 1.08000 * 120.00026 * 354.83882 * 16 15 14 18 18 C 1.38648 * 119.99708 * 174.55972 * 16 15 14 19 19 N 1.31555 * 120.00303 * 0.27727 * 18 16 15 20 20 Si 1.86801 * 119.99837 * 180.27728 * 18 16 15 21 21 H 1.48500 * 109.47361 * 59.99739 * 20 18 16 22 22 H 1.48504 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47219 * 299.99787 * 20 18 16 24 24 C 1.38880 * 119.86035 * 0.28073 * 14 13 12 25 25 C 1.38101 * 119.92752 * 359.42265 * 24 14 13 26 26 C 1.46926 * 118.73923 * 306.09075 * 7 6 5 27 27 H 1.09000 * 109.58409 * 294.07843 * 26 7 6 28 28 C 1.52996 * 109.58783 * 173.79532 * 26 7 6 29 29 C 1.53006 * 109.47167 * 293.28451 * 28 26 7 30 30 O 1.42892 * 109.47185 * 173.89923 * 29 28 26 31 31 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47367 * 300.06337 * 1 2 3 33 33 H 1.08994 * 109.47469 * 60.06735 * 1 2 3 34 34 H 1.09001 * 109.46027 * 301.34208 * 4 2 1 35 35 H 1.09004 * 109.45508 * 61.29631 * 4 2 1 36 36 H 1.09002 * 109.49624 * 58.58443 * 5 4 2 37 37 H 1.09000 * 109.49816 * 178.65131 * 5 4 2 38 38 H 1.08994 * 109.73819 * 295.11319 * 6 5 4 39 39 H 1.08997 * 109.66195 * 174.54527 * 6 5 4 40 40 H 1.09002 * 109.46899 * 60.00192 * 10 8 7 41 41 H 1.09000 * 109.47196 * 300.00095 * 10 8 7 42 42 H 1.08001 * 119.96615 * 359.97232 * 12 11 10 43 43 H 1.08005 * 120.03198 * 180.02562 * 13 12 11 44 44 H 0.96998 * 120.00043 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.03484 * 179.72354 * 24 14 13 46 46 H 1.08007 * 119.96416 * 180.27120 * 25 24 14 47 47 H 1.08997 * 109.47134 * 53.27995 * 28 26 7 48 48 H 1.09003 * 109.47367 * 173.28426 * 28 26 7 49 49 H 1.09000 * 109.46796 * 293.89891 * 29 28 26 50 50 H 1.08996 * 109.46797 * 53.89423 * 29 28 26 51 51 H 0.96701 * 114.00032 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7234 1.2481 5 6 3.5709 -0.6953 1.2658 6 6 4.1051 -1.4317 0.0278 7 7 3.5046 -0.8286 -1.1699 8 6 4.2811 -0.3856 -2.1785 9 8 3.7743 0.1288 -3.1529 10 6 5.7789 -0.5295 -2.0954 11 6 6.4080 0.0396 -3.3411 12 6 6.7700 1.3737 -3.3835 13 6 7.3462 1.8984 -4.5236 14 6 7.5626 1.0846 -5.6281 15 8 8.1293 1.5973 -6.7500 16 6 8.5812 2.8659 -6.6828 17 1 8.4096 3.4538 -5.7932 18 6 9.2712 3.4136 -7.7534 19 7 9.4803 2.6975 -8.8369 20 14 9.9040 5.1686 -7.6572 21 1 10.8504 5.2919 -6.5195 22 1 10.6019 5.5131 -8.9219 23 1 8.7621 6.0961 -7.4540 24 6 7.1931 -0.2534 -5.5841 25 6 6.6229 -0.7735 -4.4389 26 6 2.0413 -0.7234 -1.2498 27 1 1.6053 -1.7212 -1.2985 28 6 1.6515 0.0682 -2.4998 29 6 2.1154 1.5185 -2.3502 30 8 1.8796 2.2223 -3.5712 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5127 -0.8905 34 1 1.6582 -0.2251 2.1388 35 1 1.6968 -1.7576 1.2347 36 1 3.9159 0.3386 1.2541 37 1 3.9334 -1.1897 2.1670 38 1 3.8340 -2.4860 0.0812 39 1 5.1896 -1.3330 -0.0180 40 1 6.0382 -1.5846 -2.0074 41 1 6.1479 0.0094 -1.2228 42 1 6.6010 2.0061 -2.5244 43 1 7.6290 2.9402 -4.5560 44 1 9.9633 3.0806 -9.5858 45 1 7.3560 -0.8876 -6.4430 46 1 6.3394 -1.8150 -4.4026 47 1 2.1262 -0.3767 -3.3743 48 1 0.5687 0.0439 -2.6223 49 1 1.5605 1.9960 -1.5426 50 1 3.1806 1.5373 -2.1199 51 1 2.1499 3.1505 -3.5487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855535513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:36 Heat of formation + Delta-G solvation = -64.921160 kcal Electronic energy + Delta-G solvation = -31635.418110 eV Core-core repulsion = 27501.463386 eV Total energy + Delta-G solvation = -4133.954724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09876 -38.99054 -37.85660 -36.69573 -36.26863 -34.36316 -33.04244 -32.37666 -31.30463 -30.09445 -29.49730 -27.11709 -26.49904 -25.37635 -24.70255 -23.27039 -21.91690 -21.59191 -21.12128 -19.95619 -18.78984 -17.91975 -17.39096 -16.91570 -16.87188 -16.15541 -15.89667 -15.04196 -14.90330 -14.58162 -14.47086 -14.41875 -14.29903 -13.80232 -13.63286 -13.57074 -13.40766 -13.31784 -12.98416 -12.80432 -12.64254 -12.46303 -12.28251 -12.05561 -11.96464 -11.68675 -11.57294 -11.44194 -11.30595 -11.19996 -11.07721 -10.75764 -10.70327 -10.63438 -10.57050 -10.53331 -10.39490 -9.52231 -9.27625 -8.86419 -8.73528 -8.51678 -8.08579 -7.09577 -6.39375 -3.98026 2.30983 2.31875 2.75466 2.94365 3.16325 3.17753 3.20122 4.01288 4.21867 4.37565 4.41012 4.53845 4.57549 4.64354 4.87020 4.91826 5.01563 5.13028 5.16402 5.19839 5.25960 5.28066 5.29865 5.34656 5.37617 5.39173 5.45577 5.52453 5.57675 5.63900 5.68782 5.71898 5.75239 5.77602 5.80880 5.89313 5.91301 6.06510 6.16612 6.27252 6.33573 6.47825 6.67444 6.76515 6.97624 7.11151 7.29921 7.39629 7.42909 7.51089 7.90347 7.90876 8.05806 8.37878 9.06188 9.77611 10.78813 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002469 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.521892 B =11337.704410 C =11912.512740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.108 3.892 7 N -0.619 5.619 8 C 0.499 3.501 9 O -0.491 6.491 10 C -0.080 4.080 11 C -0.167 4.167 12 C -0.056 4.056 13 C -0.231 4.231 14 C 0.157 3.843 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.191 4.191 25 C -0.059 4.059 26 C 0.158 3.842 27 H 0.072 0.928 28 C -0.122 4.122 29 C 0.095 3.905 30 O -0.566 6.566 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.125 0.875 44 H 0.270 0.730 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.055 0.945 49 H 0.018 0.982 50 H 0.056 0.944 51 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.882 -7.407 23.024 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.016 4.016 7 N -0.355 5.355 8 C 0.288 3.712 9 O -0.365 6.365 10 C -0.120 4.120 11 C -0.169 4.169 12 C -0.075 4.075 13 C -0.251 4.251 14 C 0.104 3.896 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.210 4.210 25 C -0.077 4.077 26 C 0.055 3.945 27 H 0.090 0.910 28 C -0.159 4.159 29 C 0.018 3.982 30 O -0.370 6.370 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.143 0.857 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.125 0.875 47 H 0.132 0.868 48 H 0.073 0.927 49 H 0.036 0.964 50 H 0.074 0.926 51 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.214 -7.774 21.817 27.175 hybrid contribution 0.477 1.438 0.522 1.603 sum -13.737 -6.336 22.339 26.979 Atomic orbital electron populations 1.21817 0.94436 1.02027 1.02164 1.21671 0.96093 1.00463 0.94662 0.90438 1.21581 0.95215 1.00788 0.97580 1.22006 0.96184 1.01513 0.97750 1.21812 0.98724 0.96838 0.84183 1.48209 1.06061 1.62437 1.18817 1.21002 0.89590 0.78071 0.82509 1.90844 1.73380 1.40538 1.31740 1.20477 0.90916 1.02302 0.98302 1.18622 1.08431 0.94568 0.95239 1.20455 0.96561 0.93756 0.96713 1.21078 1.08699 1.00778 0.94496 1.19376 0.91439 0.92176 0.86653 1.83979 1.65442 1.29781 1.29025 1.21265 1.35422 0.86519 1.03473 0.89208 1.25273 0.96477 1.00071 0.94710 1.70030 1.38426 1.36850 1.04598 0.85798 0.79100 0.80597 0.78018 1.19559 1.20306 1.19527 1.20152 1.08253 0.93380 0.99207 1.20376 0.97119 0.98026 0.92201 1.21217 0.79713 0.98706 0.94841 0.91008 1.22062 0.99802 0.95068 0.98994 1.22388 0.99140 0.91821 0.84890 1.86472 1.86901 1.26827 1.36818 0.92533 0.92493 0.92030 0.91731 0.91789 0.91407 0.90722 0.91452 0.89350 0.89262 0.89424 0.88122 0.85728 0.92033 0.86632 0.87510 0.86794 0.92662 0.96444 0.92594 0.78267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.97 37.15 0.33 -0.68 16 2 C -0.11 -0.85 1.97 -90.50 -0.18 -1.03 16 3 H 0.08 0.70 6.17 -51.93 -0.32 0.38 16 4 C -0.11 -0.69 5.16 -26.69 -0.14 -0.82 16 5 C -0.14 -0.79 6.10 -26.39 -0.16 -0.95 16 6 C 0.11 0.73 6.37 -3.48 -0.02 0.71 16 7 N -0.62 -6.20 2.92 -164.96 -0.48 -6.69 16 8 C 0.50 6.66 6.49 -10.99 -0.07 6.58 16 9 O -0.49 -8.49 9.52 -1.29 -0.01 -8.50 16 10 C -0.08 -1.00 4.18 -29.03 -0.12 -1.12 16 11 C -0.17 -2.90 4.38 -104.58 -0.46 -3.36 16 12 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 13 C -0.23 -5.22 9.16 -39.39 -0.36 -5.58 16 14 C 0.16 3.96 6.64 -39.11 -0.26 3.70 16 15 O -0.18 -5.27 9.76 0.03 0.00 -5.27 16 16 C -0.39 -11.20 9.49 30.88 0.29 -10.90 16 17 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 20 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.19 -4.24 9.99 -39.39 -0.39 -4.63 16 25 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 26 C 0.16 1.55 2.65 -67.60 -0.18 1.37 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 C -0.12 -1.57 4.44 -26.73 -0.12 -1.69 16 29 C 0.09 1.30 5.07 37.16 0.19 1.49 16 30 O -0.57 -8.96 13.62 -42.07 -0.57 -9.53 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.48 6.78 -51.93 -0.35 0.13 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.52 5.94 -51.93 -0.31 0.22 16 40 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 41 H 0.09 0.91 7.59 -51.93 -0.39 0.51 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.13 2.81 5.65 -52.48 -0.30 2.51 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 47 H 0.11 1.86 5.76 -52.99 -0.31 1.56 16 48 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 49 H 0.02 0.21 6.60 -51.93 -0.34 -0.14 16 50 H 0.06 0.85 5.21 -51.93 -0.27 0.58 16 51 H 0.37 4.47 9.12 45.56 0.42 4.89 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -34.68 392.86 -8.93 -43.61 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.01 Total: 8.54 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.51 Total: -18.87 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.28 Total: -31.81 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.59 Total: -23.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.68 -8.93 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855535513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.312 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds