Wall clock time and date at job start Wed Apr 1 2020 04:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.49434 * 2 1 4 4 C 1.53042 * 109.49464 * 120.05819 * 2 1 3 5 5 C 1.53043 * 109.53800 * 181.35240 * 4 2 1 6 6 C 1.53198 * 109.30960 * 298.63949 * 5 4 2 7 7 N 1.46926 * 108.77768 * 54.63526 * 6 5 4 8 8 C 1.34777 * 120.63185 * 126.36940 * 7 6 5 9 9 O 1.21281 * 120.00000 * 181.59557 * 8 7 6 10 10 C 1.50705 * 119.99751 * 1.58778 * 8 7 6 11 11 C 1.50697 * 109.46565 * 180.02562 * 10 8 7 12 12 C 1.38323 * 119.96685 * 269.97613 * 11 10 8 13 13 C 1.38286 * 120.13860 * 180.02562 * 12 11 10 14 14 C 1.38124 * 120.06710 * 359.77198 * 13 12 11 15 15 C 1.38862 * 119.93079 * 0.50897 * 14 13 12 16 16 O 1.35750 * 120.06862 * 179.74542 * 15 14 13 17 17 C 1.34834 * 116.99805 * 353.30883 * 16 15 14 18 18 H 1.07991 * 120.00137 * 5.09988 * 17 16 15 19 19 C 1.38654 * 119.99661 * 185.10327 * 17 16 15 20 20 N 1.31557 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99806 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47244 * 89.99930 * 21 19 17 23 23 H 1.48503 * 109.46991 * 209.99798 * 21 19 17 24 24 H 1.48500 * 109.47223 * 329.99755 * 21 19 17 25 25 C 1.38079 * 119.96535 * 90.00908 * 11 10 8 26 26 C 1.46924 * 118.73355 * 306.64256 * 7 6 5 27 27 H 1.09005 * 109.58607 * 293.56691 * 26 7 6 28 28 C 1.53000 * 109.58311 * 173.14679 * 26 7 6 29 29 C 1.53003 * 109.47060 * 293.32359 * 28 26 7 30 30 O 1.42899 * 109.47408 * 173.89899 * 29 28 26 31 31 H 1.08996 * 109.47421 * 299.93611 * 1 2 3 32 32 H 1.09003 * 109.46852 * 59.93767 * 1 2 3 33 33 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.45630 * 61.33457 * 4 2 1 35 35 H 1.08999 * 109.46745 * 301.37603 * 4 2 1 36 36 H 1.08999 * 109.50214 * 178.68908 * 5 4 2 37 37 H 1.08993 * 109.52215 * 58.60149 * 5 4 2 38 38 H 1.08999 * 109.58763 * 294.84027 * 6 5 4 39 39 H 1.08999 * 109.58302 * 174.42246 * 6 5 4 40 40 H 1.08998 * 109.46937 * 60.00252 * 10 8 7 41 41 H 1.08999 * 109.47339 * 300.00577 * 10 8 7 42 42 H 1.07995 * 119.93373 * 0.03056 * 12 11 10 43 43 H 1.07997 * 119.96470 * 180.02562 * 13 12 11 44 44 H 1.07996 * 120.03447 * 180.27342 * 14 13 12 45 45 H 0.97003 * 120.00097 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.03632 * 359.97438 * 25 11 10 47 47 H 1.09002 * 109.47693 * 53.32045 * 28 26 7 48 48 H 1.08995 * 109.47368 * 173.32176 * 28 26 7 49 49 H 1.09005 * 109.47143 * 293.90167 * 29 28 26 50 50 H 1.08995 * 109.47106 * 53.89716 * 29 28 26 51 51 H 0.96697 * 113.99997 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7226 1.2487 5 6 3.5708 -0.6938 1.2668 6 6 4.1060 -1.4254 0.0318 7 7 3.5054 -0.8283 -1.1688 8 6 4.2820 -0.3845 -2.1770 9 8 3.7757 0.1328 -3.1501 10 6 5.7797 -0.5309 -2.0950 11 6 6.4091 0.0407 -3.3392 12 6 6.6223 -0.7690 -4.4402 13 6 7.2001 -0.2483 -5.5836 14 6 7.5617 1.0839 -5.6311 15 6 7.3543 1.8980 -4.5254 16 8 7.7134 3.2065 -4.5673 17 6 8.3911 3.6207 -5.6568 18 1 8.5526 2.9432 -6.4821 19 6 8.8805 4.9165 -5.7176 20 7 8.6833 5.7420 -4.7124 21 14 9.8188 5.4906 -7.2274 22 1 8.8680 6.0684 -8.2110 23 1 10.8097 6.5233 -6.8313 24 1 10.5245 4.3366 -7.8401 25 6 6.7728 1.3721 -3.3788 26 6 2.0423 -0.7186 -1.2468 27 1 1.6034 -1.7151 -1.2972 28 6 1.6536 0.0799 -2.4927 29 6 2.1226 1.5279 -2.3373 30 8 1.8875 2.2380 -3.5549 31 1 -0.3634 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6972 -1.7570 1.2356 35 1 1.6576 -0.2242 2.1391 36 1 3.9334 -1.1882 2.1680 37 1 3.9158 0.3400 1.2551 38 1 3.8388 -2.4806 0.0878 39 1 5.1902 -1.3228 -0.0124 40 1 6.0374 -1.5865 -2.0091 41 1 6.1500 0.0056 -1.2214 42 1 6.3370 -1.8101 -4.4068 43 1 7.3649 -0.8830 -6.4417 44 1 8.0088 1.4911 -6.5259 45 1 9.0254 6.6487 -4.7551 46 1 6.6062 2.0039 -2.5188 47 1 2.1256 -0.3627 -3.3699 48 1 0.5706 0.0597 -2.6139 49 1 1.5704 2.0037 -1.5268 50 1 3.1881 1.5421 -2.1084 51 1 2.1611 3.1651 -3.5286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855539331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:52 Heat of formation + Delta-G solvation = -64.866189 kcal Electronic energy + Delta-G solvation = -31882.428174 eV Core-core repulsion = 27748.475834 eV Total energy + Delta-G solvation = -4133.952340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.09159 -38.99649 -37.83588 -36.62232 -36.22778 -34.34120 -33.01596 -32.29940 -31.84842 -29.64849 -29.05483 -27.31818 -26.58817 -25.33298 -24.90138 -23.22439 -21.65326 -21.54588 -21.19612 -20.04298 -18.81311 -17.56502 -17.31854 -16.90015 -16.81594 -16.00680 -15.88644 -15.05091 -14.97883 -14.77395 -14.48623 -14.38748 -14.32698 -13.77039 -13.65461 -13.57209 -13.38034 -13.28411 -12.89566 -12.74937 -12.53520 -12.36323 -12.22841 -12.02639 -11.93005 -11.65623 -11.51286 -11.42570 -11.25703 -11.20250 -11.02562 -10.74780 -10.71498 -10.59005 -10.54763 -10.46257 -10.39858 -9.43772 -9.27852 -8.84003 -8.77084 -8.49063 -7.98247 -7.14802 -6.38789 -3.97538 2.15671 2.46314 2.76070 2.95874 3.17209 3.17401 3.22148 4.01783 4.26822 4.42677 4.46823 4.57057 4.61676 4.70559 4.88874 4.95721 4.98874 5.13762 5.16420 5.18020 5.24882 5.28965 5.35214 5.38641 5.44163 5.49392 5.53138 5.58670 5.65428 5.69848 5.72499 5.75807 5.81194 5.82308 5.86703 5.95439 5.99839 6.12430 6.23762 6.24542 6.37002 6.40410 6.70721 6.73420 6.98434 7.13914 7.33604 7.39664 7.44186 7.50758 7.89941 8.01210 8.06651 8.38042 9.07354 9.78711 10.79624 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.002712 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.821707 B =10323.570514 C =10857.944012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.138 4.138 6 C 0.107 3.893 7 N -0.618 5.618 8 C 0.504 3.496 9 O -0.489 6.489 10 C -0.094 4.094 11 C -0.031 4.031 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.230 4.230 15 C 0.156 3.844 16 O -0.181 6.181 17 C -0.389 4.389 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.866 5.866 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.174 4.174 26 C 0.159 3.841 27 H 0.072 0.928 28 C -0.122 4.122 29 C 0.094 3.906 30 O -0.568 6.568 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.268 0.732 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.055 0.945 49 H 0.019 0.981 50 H 0.056 0.944 51 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 -15.000 13.052 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.176 4.176 6 C -0.016 4.016 7 N -0.354 5.354 8 C 0.293 3.707 9 O -0.363 6.363 10 C -0.134 4.134 11 C -0.032 4.032 12 C -0.214 4.214 13 C -0.093 4.093 14 C -0.249 4.249 15 C 0.103 3.897 16 O -0.085 6.085 17 C -0.466 4.466 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.501 5.501 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.193 4.193 26 C 0.056 3.944 27 H 0.090 0.910 28 C -0.159 4.159 29 C 0.017 3.983 30 O -0.372 6.372 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.078 0.922 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.074 0.926 49 H 0.037 0.963 50 H 0.074 0.926 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.580 -14.871 12.530 23.161 hybrid contribution 0.685 0.792 -0.394 1.119 sum -11.895 -14.079 12.136 22.068 Atomic orbital electron populations 1.21814 0.94384 1.01965 1.02213 1.21613 0.96145 1.00660 0.94654 0.90304 1.21578 0.95198 1.00725 0.97613 1.21943 0.96205 1.01712 0.97725 1.21736 0.98738 0.96926 0.84182 1.48155 1.06108 1.62495 1.18608 1.20713 0.89154 0.78166 0.82687 1.90859 1.73304 1.40266 1.31908 1.20666 0.91584 1.02664 0.98498 1.18653 0.97734 0.93078 0.93691 1.20329 1.07940 0.98696 0.94412 1.20673 0.97160 0.94626 0.96818 1.21167 1.09383 0.94466 0.99917 1.19261 0.92541 0.85095 0.92841 1.83971 1.64051 1.18392 1.42073 1.21305 1.32905 0.97547 0.94806 0.89187 1.25256 0.97451 0.95059 0.98753 1.70041 1.43508 1.06221 1.30341 0.85734 0.79013 0.78853 0.79958 1.19921 1.20320 1.19244 1.19899 1.07578 0.94340 0.97518 1.21125 0.79556 0.98710 0.94985 0.90982 1.22070 0.99771 0.95118 0.98977 1.22379 0.99256 0.91634 0.85052 1.86429 1.86759 1.27054 1.36975 0.92464 0.92006 0.92575 0.91826 0.91683 0.90642 0.91270 0.91434 0.89353 0.88669 0.88663 0.88054 0.87565 0.85707 0.92164 0.87109 0.86868 0.92642 0.96347 0.92565 0.77967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.97 37.16 0.33 -0.76 16 2 C -0.11 -0.95 1.96 -90.72 -0.18 -1.13 16 3 H 0.08 0.80 6.12 -51.93 -0.32 0.48 16 4 C -0.11 -0.76 5.17 -26.69 -0.14 -0.90 16 5 C -0.14 -0.91 6.08 -26.61 -0.16 -1.07 16 6 C 0.11 0.79 6.34 -3.71 -0.02 0.77 16 7 N -0.62 -6.61 2.93 -165.47 -0.49 -7.09 16 8 C 0.50 7.13 6.48 -10.98 -0.07 7.06 16 9 O -0.49 -8.85 9.53 -1.05 -0.01 -8.86 16 10 C -0.09 -1.26 4.18 -29.03 -0.12 -1.38 16 11 C -0.03 -0.57 4.37 -104.65 -0.46 -1.02 16 12 C -0.19 -3.56 9.70 -39.53 -0.38 -3.94 16 13 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 14 C -0.23 -5.27 9.16 -39.39 -0.36 -5.63 16 15 C 0.16 3.92 6.64 -39.11 -0.26 3.66 16 16 O -0.18 -5.31 9.76 0.04 0.00 -5.31 16 17 C -0.39 -11.17 9.49 30.89 0.29 -10.87 16 18 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.87 -25.79 13.67 55.48 0.76 -25.03 16 21 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 C -0.17 -3.81 9.64 -39.39 -0.38 -4.19 16 26 C 0.16 1.65 2.65 -67.83 -0.18 1.47 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 C -0.12 -1.65 4.44 -26.73 -0.12 -1.76 16 29 C 0.09 1.41 5.06 37.16 0.19 1.60 16 30 O -0.57 -9.72 13.63 -41.84 -0.57 -10.30 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.52 6.76 -51.93 -0.35 0.17 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.58 5.94 -51.93 -0.31 0.27 16 40 H 0.10 1.01 7.95 -51.93 -0.41 0.60 16 41 H 0.10 1.11 7.57 -51.93 -0.39 0.72 16 42 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.13 2.85 5.65 -52.49 -0.30 2.55 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 47 H 0.11 1.89 5.76 -53.02 -0.31 1.58 16 48 H 0.06 0.69 6.95 -51.93 -0.36 0.33 16 49 H 0.02 0.24 6.59 -51.93 -0.34 -0.10 16 50 H 0.06 0.95 5.21 -51.93 -0.27 0.68 16 51 H 0.37 5.21 9.12 45.56 0.42 5.63 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -34.70 392.73 -8.93 -43.63 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.00 Total: 10.05 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.51 Total: -18.99 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.27 Total: -32.13 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.58 Total: -24.46 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.70 -8.93 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855539331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.235 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds