Wall clock time and date at job start Wed Apr 1 2020 04:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.49434 * 2 1 4 4 C 1.53042 * 109.49464 * 120.05819 * 2 1 3 5 5 C 1.53043 * 109.53800 * 181.35240 * 4 2 1 6 6 C 1.53198 * 109.30960 * 298.63949 * 5 4 2 7 7 N 1.46926 * 108.77768 * 54.63526 * 6 5 4 8 8 C 1.34777 * 120.63185 * 126.36940 * 7 6 5 9 9 O 1.21281 * 120.00000 * 181.59557 * 8 7 6 10 10 C 1.50705 * 119.99751 * 1.58778 * 8 7 6 11 11 C 1.50697 * 109.46565 * 180.02562 * 10 8 7 12 12 C 1.38323 * 119.96685 * 269.97613 * 11 10 8 13 13 C 1.38286 * 120.13860 * 180.02562 * 12 11 10 14 14 C 1.38124 * 120.06710 * 359.77198 * 13 12 11 15 15 C 1.38862 * 119.93079 * 0.50897 * 14 13 12 16 16 O 1.35750 * 120.06862 * 179.74542 * 15 14 13 17 17 C 1.34834 * 116.99805 * 353.30883 * 16 15 14 18 18 H 1.07991 * 120.00137 * 5.09988 * 17 16 15 19 19 C 1.38654 * 119.99661 * 185.10327 * 17 16 15 20 20 N 1.31557 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99806 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47244 * 89.99930 * 21 19 17 23 23 H 1.48503 * 109.46991 * 209.99798 * 21 19 17 24 24 H 1.48500 * 109.47223 * 329.99755 * 21 19 17 25 25 C 1.38079 * 119.96535 * 90.00908 * 11 10 8 26 26 C 1.46924 * 118.73355 * 306.64256 * 7 6 5 27 27 H 1.09005 * 109.58607 * 293.56691 * 26 7 6 28 28 C 1.53000 * 109.58311 * 173.14679 * 26 7 6 29 29 C 1.53003 * 109.47060 * 293.32359 * 28 26 7 30 30 O 1.42899 * 109.47408 * 173.89899 * 29 28 26 31 31 H 1.08996 * 109.47421 * 299.93611 * 1 2 3 32 32 H 1.09003 * 109.46852 * 59.93767 * 1 2 3 33 33 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.45630 * 61.33457 * 4 2 1 35 35 H 1.08999 * 109.46745 * 301.37603 * 4 2 1 36 36 H 1.08999 * 109.50214 * 178.68908 * 5 4 2 37 37 H 1.08993 * 109.52215 * 58.60149 * 5 4 2 38 38 H 1.08999 * 109.58763 * 294.84027 * 6 5 4 39 39 H 1.08999 * 109.58302 * 174.42246 * 6 5 4 40 40 H 1.08998 * 109.46937 * 60.00252 * 10 8 7 41 41 H 1.08999 * 109.47339 * 300.00577 * 10 8 7 42 42 H 1.07995 * 119.93373 * 0.03056 * 12 11 10 43 43 H 1.07997 * 119.96470 * 180.02562 * 13 12 11 44 44 H 1.07996 * 120.03447 * 180.27342 * 14 13 12 45 45 H 0.97003 * 120.00097 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.03632 * 359.97438 * 25 11 10 47 47 H 1.09002 * 109.47693 * 53.32045 * 28 26 7 48 48 H 1.08995 * 109.47368 * 173.32176 * 28 26 7 49 49 H 1.09005 * 109.47143 * 293.90167 * 29 28 26 50 50 H 1.08995 * 109.47106 * 53.89716 * 29 28 26 51 51 H 0.96697 * 113.99997 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7226 1.2487 5 6 3.5708 -0.6938 1.2668 6 6 4.1060 -1.4254 0.0318 7 7 3.5054 -0.8283 -1.1688 8 6 4.2820 -0.3845 -2.1770 9 8 3.7757 0.1328 -3.1501 10 6 5.7797 -0.5309 -2.0950 11 6 6.4091 0.0407 -3.3392 12 6 6.6223 -0.7690 -4.4402 13 6 7.2001 -0.2483 -5.5836 14 6 7.5617 1.0839 -5.6311 15 6 7.3543 1.8980 -4.5254 16 8 7.7134 3.2065 -4.5673 17 6 8.3911 3.6207 -5.6568 18 1 8.5526 2.9432 -6.4821 19 6 8.8805 4.9165 -5.7176 20 7 8.6833 5.7420 -4.7124 21 14 9.8188 5.4906 -7.2274 22 1 8.8680 6.0684 -8.2110 23 1 10.8097 6.5233 -6.8313 24 1 10.5245 4.3366 -7.8401 25 6 6.7728 1.3721 -3.3788 26 6 2.0423 -0.7186 -1.2468 27 1 1.6034 -1.7151 -1.2972 28 6 1.6536 0.0799 -2.4927 29 6 2.1226 1.5279 -2.3373 30 8 1.8875 2.2380 -3.5549 31 1 -0.3634 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6972 -1.7570 1.2356 35 1 1.6576 -0.2242 2.1391 36 1 3.9334 -1.1882 2.1680 37 1 3.9158 0.3400 1.2551 38 1 3.8388 -2.4806 0.0878 39 1 5.1902 -1.3228 -0.0124 40 1 6.0374 -1.5865 -2.0091 41 1 6.1500 0.0056 -1.2214 42 1 6.3370 -1.8101 -4.4068 43 1 7.3649 -0.8830 -6.4417 44 1 8.0088 1.4911 -6.5259 45 1 9.0254 6.6487 -4.7551 46 1 6.6062 2.0039 -2.5188 47 1 2.1256 -0.3627 -3.3699 48 1 0.5706 0.0597 -2.6139 49 1 1.5704 2.0037 -1.5268 50 1 3.1881 1.5421 -2.1084 51 1 2.1611 3.1651 -3.5286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855539331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:51 Heat of formation + Delta-G solvation = -88.504166 kcal Electronic energy + Delta-G solvation = -31883.453193 eV Core-core repulsion = 27748.475834 eV Total energy + Delta-G solvation = -4134.977360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.05851 -40.71804 -38.95462 -38.06376 -37.63218 -35.24861 -34.32677 -33.85045 -33.22209 -30.94893 -30.42618 -28.61674 -27.42264 -27.16037 -26.00842 -24.10347 -23.28123 -22.76138 -22.24317 -21.15378 -19.81969 -19.38176 -18.70829 -18.47335 -17.87168 -17.02075 -16.94409 -16.68931 -16.28245 -16.09737 -15.86807 -15.55036 -15.45907 -15.20037 -14.97545 -14.67718 -14.47713 -14.35882 -14.19475 -13.94556 -13.81454 -13.58152 -13.43115 -13.07424 -13.02363 -12.92088 -12.68129 -12.61093 -12.42193 -12.34112 -12.29080 -12.22029 -12.10377 -11.90852 -11.62347 -11.40537 -11.24617 -11.19102 -10.80499 -10.62062 -9.98886 -9.57820 -9.39379 -8.96318 -8.46967 -6.15277 0.53733 0.77080 1.33394 1.43029 1.51124 1.71838 2.05453 2.17563 2.84042 3.16702 3.33650 3.44756 3.71737 3.73851 3.81932 3.95036 4.03142 4.10418 4.11929 4.20872 4.29808 4.31839 4.38319 4.42276 4.49017 4.56988 4.59647 4.61422 4.63882 4.67417 4.73721 4.83540 4.87648 4.92299 4.98450 5.06772 5.11619 5.13466 5.14480 5.21982 5.24178 5.31503 5.33301 5.43261 5.53557 5.65961 5.73608 5.76193 5.76936 6.03143 6.23984 6.50318 6.82429 6.97747 7.35736 7.79468 8.76537 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.002712 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.821707 B =10323.570514 C =10857.944012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.057 0.943 4 C -0.110 4.110 5 C -0.136 4.136 6 C 0.099 3.901 7 N -0.609 5.609 8 C 0.500 3.500 9 O -0.539 6.539 10 C -0.092 4.092 11 C -0.020 4.020 12 C -0.179 4.179 13 C -0.074 4.074 14 C -0.248 4.248 15 C 0.114 3.886 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.098 0.902 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.253 1.253 25 C -0.190 4.190 26 C 0.161 3.839 27 H 0.092 0.908 28 C -0.116 4.116 29 C 0.096 3.904 30 O -0.593 6.593 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.272 0.728 46 H 0.102 0.898 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.035 0.965 50 H 0.035 0.965 51 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 -18.857 14.335 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.174 4.174 6 C -0.022 4.022 7 N -0.343 5.343 8 C 0.290 3.710 9 O -0.417 6.417 10 C -0.131 4.131 11 C -0.021 4.021 12 C -0.198 4.198 13 C -0.092 4.092 14 C -0.267 4.267 15 C 0.064 3.936 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.116 0.884 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.177 1.177 25 C -0.209 4.209 26 C 0.058 3.942 27 H 0.110 0.890 28 C -0.153 4.153 29 C 0.019 3.981 30 O -0.399 6.399 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.131 0.869 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.133 0.867 45 H 0.081 0.919 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.079 0.921 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.148 -18.800 13.867 26.807 hybrid contribution 0.689 1.712 -0.654 1.958 sum -12.459 -17.088 13.213 24.936 Atomic orbital electron populations 1.21797 0.93503 1.02839 1.01977 1.21560 0.96836 0.99479 0.94811 0.92462 1.21574 0.95217 1.01371 0.96561 1.21947 0.96133 1.00931 0.98372 1.22086 0.99379 0.98072 0.82712 1.48190 1.06130 1.61274 1.18730 1.20801 0.89518 0.77881 0.82826 1.90881 1.74094 1.42668 1.34086 1.20756 0.90918 1.04998 0.96428 1.19160 0.95619 0.91380 0.95938 1.20929 1.05019 1.00592 0.93243 1.21111 0.95979 0.93389 0.98715 1.21275 1.10362 0.96034 0.99027 1.19846 0.94212 0.84544 0.94954 1.83930 1.66351 1.20860 1.43008 1.21797 1.33462 0.98405 0.95283 0.88433 1.26575 0.98265 0.94712 1.02455 1.70186 1.45793 1.06848 1.33161 0.84600 0.77582 0.78695 0.75396 1.18987 1.19280 1.17672 1.20147 1.08035 0.96169 0.96558 1.21184 0.79514 0.99235 0.94226 0.89043 1.21952 0.99681 0.94174 0.99491 1.22455 0.98247 0.92756 0.84637 1.86395 1.86898 1.28005 1.38610 0.91528 0.93473 0.91112 0.90206 0.90886 0.88193 0.93004 0.88902 0.88218 0.84501 0.86911 0.83771 0.83947 0.86661 0.91876 0.87942 0.90032 0.92059 0.94750 0.94698 0.77056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.97 71.98 0.65 -1.19 16 2 C -0.11 -1.61 1.96 -10.86 -0.02 -1.63 16 3 H 0.06 1.11 6.12 -2.38 -0.01 1.10 16 4 C -0.11 -1.07 5.17 30.62 0.16 -0.91 16 5 C -0.14 -1.30 6.08 30.68 0.19 -1.11 16 6 C 0.10 1.04 6.34 86.36 0.55 1.59 16 7 N -0.61 -11.46 2.93 -795.82 -2.33 -13.80 16 8 C 0.50 13.35 6.48 87.66 0.57 13.92 16 9 O -0.54 -19.61 9.53 3.29 0.03 -19.58 16 10 C -0.09 -2.18 4.18 29.10 0.12 -2.06 16 11 C -0.02 -0.72 4.37 -19.88 -0.09 -0.81 16 12 C -0.18 -6.03 9.70 22.30 0.22 -5.82 16 13 C -0.07 -2.78 10.04 22.25 0.22 -2.55 16 14 C -0.25 -11.69 9.16 22.39 0.21 -11.48 16 15 C 0.11 6.09 6.64 22.58 0.15 6.24 16 16 O -0.23 -14.85 9.76 -22.78 -0.22 -15.08 16 17 C -0.41 -25.21 9.49 67.92 0.64 -24.56 16 18 H 0.10 5.52 5.21 -2.92 -0.02 5.50 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 20 N -0.92 -58.13 13.67 21.61 0.30 -57.84 16 21 Si 1.02 44.46 29.55 68.60 2.03 46.49 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 25 C -0.19 -8.65 9.64 22.39 0.22 -8.43 16 26 C 0.16 3.00 2.65 44.83 0.12 3.12 16 27 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 28 C -0.12 -3.11 4.44 30.60 0.14 -2.97 16 29 C 0.10 2.98 5.06 71.98 0.36 3.34 16 30 O -0.59 -21.50 13.63 -142.66 -1.94 -23.44 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.74 6.76 -2.39 -0.02 0.72 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 0.85 5.94 -2.39 -0.01 0.84 16 40 H 0.14 2.15 7.95 -2.39 -0.02 2.13 16 41 H 0.11 2.33 7.57 -2.39 -0.02 2.31 16 42 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 43 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.12 5.52 5.65 -2.91 -0.02 5.50 16 45 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 46 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 47 H 0.08 2.78 5.76 -19.60 -0.11 2.66 16 48 H 0.06 1.52 6.95 -2.39 -0.02 1.50 16 49 H 0.03 0.93 6.59 -2.38 -0.02 0.92 16 50 H 0.03 1.24 5.21 -2.39 -0.01 1.22 16 51 H 0.38 11.63 9.12 -74.06 -0.68 10.95 16 Total: -1.00 -84.09 392.73 2.89 -81.19 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.18 Total: 38.24 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 4.86 Total: -36.19 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -2.04 Total: -71.63 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -2.13 Total: -58.10 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -84.09 2.89 -81.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855539331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.310 kcal (2) G-P(sol) polarization free energy of solvation -84.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds