Wall clock time and date at job start Wed Apr 1 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.50020 * 2 1 4 4 C 1.53043 * 109.52467 * 120.08365 * 2 1 3 5 5 C 1.53039 * 109.53773 * 58.60108 * 4 2 1 6 6 C 1.52755 * 109.38742 * 61.24040 * 5 4 2 7 7 N 1.46928 * 109.00725 * 305.59341 * 6 5 4 8 8 C 1.34786 * 120.62696 * 233.58267 * 7 6 5 9 9 O 1.21284 * 119.99802 * 185.22228 * 8 7 6 10 10 C 1.50696 * 119.99776 * 5.21961 * 8 7 6 11 11 C 1.50707 * 109.46964 * 180.02562 * 10 8 7 12 12 C 1.38327 * 119.96307 * 269.98132 * 11 10 8 13 13 C 1.38276 * 120.13801 * 180.02562 * 12 11 10 14 14 C 1.38131 * 120.06727 * 359.67064 * 13 12 11 15 15 C 1.38854 * 119.92719 * 0.60207 * 14 13 12 16 16 O 1.35751 * 120.06881 * 179.69583 * 15 14 13 17 17 C 1.34832 * 116.99880 * 5.10105 * 16 15 14 18 18 H 1.08003 * 119.99954 * 354.93854 * 17 16 15 19 19 C 1.38651 * 119.99867 * 174.66796 * 17 16 15 20 20 N 1.31549 * 120.00381 * 0.27392 * 19 17 16 21 21 Si 1.86805 * 119.99850 * 180.27465 * 19 17 16 22 22 H 1.48502 * 109.47036 * 89.99816 * 21 19 17 23 23 H 1.48491 * 109.47276 * 209.99746 * 21 19 17 24 24 H 1.48504 * 109.47027 * 329.99980 * 21 19 17 25 25 C 1.38073 * 119.96658 * 89.99896 * 11 10 8 26 26 C 1.46923 * 118.74383 * 53.30231 * 7 6 5 27 27 H 1.09007 * 109.58572 * 66.57294 * 26 7 6 28 28 C 1.52992 * 109.58808 * 186.85840 * 26 7 6 29 29 C 1.53006 * 109.46969 * 178.26562 * 28 26 7 30 30 O 1.42902 * 109.47068 * 184.85222 * 29 28 26 31 31 H 1.09001 * 109.47472 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47131 * 300.06369 * 1 2 3 33 33 H 1.08997 * 109.47148 * 60.06412 * 1 2 3 34 34 H 1.08996 * 109.45799 * 178.62089 * 4 2 1 35 35 H 1.08998 * 109.45967 * 298.59723 * 4 2 1 36 36 H 1.09003 * 109.49839 * 181.31964 * 5 4 2 37 37 H 1.09008 * 109.49974 * 301.38179 * 5 4 2 38 38 H 1.09000 * 109.51672 * 185.70627 * 6 5 4 39 39 H 1.09000 * 109.43197 * 65.41967 * 6 5 4 40 40 H 1.09001 * 109.47472 * 60.00402 * 10 8 7 41 41 H 1.09001 * 109.47680 * 299.99914 * 10 8 7 42 42 H 1.08001 * 119.92712 * 0.02562 * 12 11 10 43 43 H 1.07997 * 119.96541 * 179.97438 * 13 12 11 44 44 H 1.07996 * 120.03574 * 180.32012 * 14 13 12 45 45 H 0.97006 * 120.00297 * 180.02562 * 20 19 17 46 46 H 1.08005 * 120.03303 * 0.02562 * 25 11 10 47 47 H 1.09003 * 109.47736 * 298.26363 * 28 26 7 48 48 H 1.09004 * 109.47299 * 58.26723 * 28 26 7 49 49 H 1.08993 * 109.46900 * 304.85003 * 29 28 26 50 50 H 1.08994 * 109.47066 * 64.85180 * 29 28 26 51 51 H 0.96699 * 114.00307 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5043 -2.1559 1.2657 6 6 2.0103 -2.9024 0.0328 7 7 1.6522 -2.1380 -1.1698 8 6 0.9745 -2.7218 -2.1781 9 8 0.7673 -2.1093 -3.2042 10 6 0.4744 -4.1357 -2.0304 11 6 -0.2444 -4.5483 -3.2891 12 6 -1.6041 -4.3261 -3.4126 13 6 -2.2673 -4.7037 -4.5657 14 6 -1.5722 -5.2982 -5.6008 15 6 -0.2083 -5.5277 -5.4775 16 8 0.4765 -6.1173 -6.4905 17 6 -0.2033 -6.3595 -7.6294 18 1 -1.2640 -6.1619 -7.6775 19 6 0.4604 -6.8568 -8.7405 20 7 1.7523 -7.0976 -8.6819 21 14 -0.4801 -7.1851 -10.3208 22 1 -0.4664 -5.9652 -11.1675 23 1 0.1617 -8.3046 -11.0554 24 1 -1.8834 -7.5463 -9.9958 25 6 0.4549 -5.1481 -4.3175 26 6 2.0413 -0.7235 -1.2498 27 1 3.1273 -0.6455 -1.3010 28 6 1.4222 -0.0910 -2.4978 29 6 1.7934 1.3922 -2.5555 30 8 1.1240 2.0083 -3.6575 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8905 34 1 3.1311 -0.7439 1.2347 35 1 1.6992 -0.1962 2.1388 36 1 1.8498 -2.6630 2.1667 37 1 0.4145 -2.1362 1.2547 38 1 1.5490 -3.8890 -0.0105 39 1 3.0939 -3.0056 0.0907 40 1 -0.2112 -4.1922 -1.1849 41 1 1.3185 -4.8037 -1.8589 42 1 -2.1488 -3.8567 -2.6068 43 1 -3.3290 -4.5293 -4.6590 44 1 -2.0897 -5.5882 -6.5032 45 1 2.2167 -7.4452 -9.4594 46 1 1.5164 -5.3220 -4.2202 47 1 1.8012 -0.5952 -3.3868 48 1 0.3377 -0.1928 -2.4569 49 1 1.4906 1.8788 -1.6284 50 1 2.8712 1.4923 -2.6831 51 1 1.3137 2.9514 -3.7556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855539332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:56 Heat of formation + Delta-G solvation = -79.008547 kcal Electronic energy + Delta-G solvation = -31443.260370 eV Core-core repulsion = 27308.694771 eV Total energy + Delta-G solvation = -4134.565599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.96095 -39.00675 -37.91851 -36.94209 -36.34331 -34.18853 -33.11627 -32.26943 -31.76823 -29.57632 -29.10137 -27.50967 -26.78947 -25.27882 -24.73232 -23.83056 -21.65499 -21.36513 -21.14729 -19.97053 -18.55165 -17.54686 -17.53489 -16.89463 -16.73392 -16.23382 -15.70711 -15.40233 -15.03385 -14.70759 -14.69182 -14.32151 -14.18692 -14.07414 -13.86414 -13.53159 -13.43552 -13.34003 -13.06400 -12.84768 -12.53174 -12.33913 -12.15571 -11.95197 -11.85436 -11.69867 -11.47806 -11.41422 -11.21121 -11.17416 -10.97516 -10.77491 -10.74757 -10.71193 -10.63179 -10.52947 -10.37329 -9.96907 -9.25621 -8.87141 -8.75152 -8.60099 -7.96500 -7.12599 -6.36409 -3.95213 2.17438 2.48232 2.80267 2.94126 3.18218 3.20274 3.23776 4.03491 4.07527 4.37313 4.46970 4.51309 4.59466 4.69899 4.88314 4.92879 4.99720 5.05205 5.12374 5.16699 5.19229 5.23836 5.25828 5.34026 5.39475 5.42121 5.48588 5.51983 5.55122 5.56219 5.62521 5.74559 5.78550 5.82691 5.85617 5.87566 6.01615 6.11506 6.25990 6.27953 6.35191 6.42825 6.73714 6.75183 7.00636 7.15824 7.35682 7.40617 7.46018 7.52965 7.57453 7.91908 8.08923 8.38570 9.09597 9.81010 10.82062 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.002551 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.272709 B =10975.015943 C =11689.108407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.139 4.139 6 C 0.107 3.893 7 N -0.615 5.615 8 C 0.516 3.484 9 O -0.504 6.504 10 C -0.094 4.094 11 C -0.032 4.032 12 C -0.195 4.195 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.181 6.181 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.174 4.174 26 C 0.158 3.842 27 H 0.069 0.931 28 C -0.118 4.118 29 C 0.068 3.932 30 O -0.568 6.568 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.041 0.959 50 H 0.039 0.961 51 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 13.734 22.303 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.177 4.177 6 C -0.016 4.016 7 N -0.351 5.351 8 C 0.304 3.696 9 O -0.378 6.378 10 C -0.134 4.134 11 C -0.032 4.032 12 C -0.214 4.214 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.102 3.898 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.501 5.501 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.193 4.193 26 C 0.055 3.945 27 H 0.087 0.913 28 C -0.155 4.155 29 C -0.010 4.010 30 O -0.372 6.372 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.078 0.922 46 H 0.131 0.869 47 H 0.122 0.878 48 H 0.102 0.898 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.840 13.258 21.463 25.241 hybrid contribution -0.186 0.468 -0.528 0.730 sum 0.654 13.726 20.934 25.041 Atomic orbital electron populations 1.21906 0.94610 1.02415 1.01669 1.21605 0.96992 0.99313 0.94684 0.90264 1.21539 1.00461 0.95623 0.97529 1.21909 1.01929 0.96152 0.97741 1.21650 1.00447 0.95398 0.84081 1.48110 1.57874 1.10576 1.18558 1.20747 0.77342 0.88698 0.82806 1.90809 1.55441 1.63614 1.27954 1.20665 1.01016 0.93645 0.98084 1.18662 0.93295 0.97921 0.93367 1.20322 0.93836 1.08231 0.99048 1.20668 0.98367 0.97089 0.93160 1.21168 0.94596 1.08346 1.00908 1.19264 0.90623 0.90650 0.89279 1.83975 1.37651 1.66523 1.20295 1.21312 0.93503 1.44428 0.87352 0.89160 1.25262 0.95894 0.96773 0.98607 1.70040 1.07844 1.41639 1.30540 0.85731 0.79039 0.78349 0.80417 1.19916 1.20325 1.19239 1.19925 0.99127 1.06947 0.93302 1.21083 0.98265 0.80397 0.94772 0.91320 1.22148 1.03213 0.91749 0.98370 1.22427 0.95086 0.95187 0.88277 1.86571 1.72422 1.27013 1.51196 0.92152 0.92974 0.92058 0.91807 0.91704 0.90750 0.90961 0.89305 0.91370 0.88647 0.88523 0.88088 0.87561 0.85671 0.92152 0.86934 0.87842 0.89812 0.94105 0.94287 0.78025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.20 37.16 0.30 -1.01 16 2 C -0.11 -0.84 2.26 -90.50 -0.20 -1.04 16 3 H 0.08 0.55 6.63 -51.93 -0.34 0.20 16 4 C -0.11 -0.70 5.43 -26.69 -0.14 -0.85 16 5 C -0.14 -0.85 5.72 -26.84 -0.15 -1.00 16 6 C 0.11 0.81 6.32 -3.93 -0.02 0.78 16 7 N -0.62 -6.75 2.42 -165.48 -0.40 -7.15 16 8 C 0.52 7.61 7.53 -10.98 -0.08 7.52 16 9 O -0.50 -9.68 11.59 5.55 0.06 -9.62 16 10 C -0.09 -1.29 4.18 -29.03 -0.12 -1.41 16 11 C -0.03 -0.60 4.37 -104.65 -0.46 -1.05 16 12 C -0.20 -3.63 9.70 -39.53 -0.38 -4.02 16 13 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 14 C -0.23 -5.36 9.17 -39.39 -0.36 -5.72 16 15 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 16 O -0.18 -5.39 9.76 0.04 0.00 -5.39 16 17 C -0.39 -11.34 9.49 30.88 0.29 -11.05 16 18 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.87 -26.18 13.67 55.48 0.76 -25.42 16 21 Si 0.94 21.29 29.55 -169.99 -5.02 16.27 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.17 -3.90 9.64 -39.40 -0.38 -4.28 16 26 C 0.16 1.64 2.74 -67.60 -0.19 1.45 16 27 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 28 C -0.12 -1.57 3.01 -26.73 -0.08 -1.65 16 29 C 0.07 0.73 6.77 37.16 0.25 0.99 16 30 O -0.57 -7.07 13.66 -35.23 -0.48 -7.55 16 31 H 0.06 0.59 5.97 -51.93 -0.31 0.28 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.64 6.35 -51.93 -0.33 0.31 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.49 6.34 -51.92 -0.33 0.16 16 38 H 0.09 0.59 5.93 -51.93 -0.31 0.28 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.03 7.85 -51.93 -0.41 0.63 16 41 H 0.10 1.15 7.67 -51.93 -0.40 0.75 16 42 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.13 2.89 5.63 -52.49 -0.30 2.59 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.11 2.46 8.06 -52.48 -0.42 2.04 16 47 H 0.10 1.78 6.23 -51.93 -0.32 1.46 16 48 H 0.08 1.31 5.52 -51.93 -0.29 1.02 16 49 H 0.04 0.35 6.29 -51.93 -0.33 0.03 16 50 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.37 2.66 9.12 45.56 0.42 3.07 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -36.12 392.89 -8.52 -44.64 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.88 Total: 7.80 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.48 Total: -19.50 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.36 Total: -32.57 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.42 Total: -22.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.12 -8.52 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855539332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.368 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds