Wall clock time and date at job start Wed Apr 1 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.50020 * 2 1 4 4 C 1.53043 * 109.52467 * 120.08365 * 2 1 3 5 5 C 1.53039 * 109.53773 * 58.60108 * 4 2 1 6 6 C 1.52755 * 109.38742 * 61.24040 * 5 4 2 7 7 N 1.46928 * 109.00725 * 305.59341 * 6 5 4 8 8 C 1.34786 * 120.62696 * 233.58267 * 7 6 5 9 9 O 1.21284 * 119.99802 * 185.22228 * 8 7 6 10 10 C 1.50696 * 119.99776 * 5.21961 * 8 7 6 11 11 C 1.50707 * 109.46964 * 180.02562 * 10 8 7 12 12 C 1.38327 * 119.96307 * 269.98132 * 11 10 8 13 13 C 1.38276 * 120.13801 * 180.02562 * 12 11 10 14 14 C 1.38131 * 120.06727 * 359.67064 * 13 12 11 15 15 C 1.38854 * 119.92719 * 0.60207 * 14 13 12 16 16 O 1.35751 * 120.06881 * 179.69583 * 15 14 13 17 17 C 1.34832 * 116.99880 * 5.10105 * 16 15 14 18 18 H 1.08003 * 119.99954 * 354.93854 * 17 16 15 19 19 C 1.38651 * 119.99867 * 174.66796 * 17 16 15 20 20 N 1.31549 * 120.00381 * 0.27392 * 19 17 16 21 21 Si 1.86805 * 119.99850 * 180.27465 * 19 17 16 22 22 H 1.48502 * 109.47036 * 89.99816 * 21 19 17 23 23 H 1.48491 * 109.47276 * 209.99746 * 21 19 17 24 24 H 1.48504 * 109.47027 * 329.99980 * 21 19 17 25 25 C 1.38073 * 119.96658 * 89.99896 * 11 10 8 26 26 C 1.46923 * 118.74383 * 53.30231 * 7 6 5 27 27 H 1.09007 * 109.58572 * 66.57294 * 26 7 6 28 28 C 1.52992 * 109.58808 * 186.85840 * 26 7 6 29 29 C 1.53006 * 109.46969 * 178.26562 * 28 26 7 30 30 O 1.42902 * 109.47068 * 184.85222 * 29 28 26 31 31 H 1.09001 * 109.47472 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47131 * 300.06369 * 1 2 3 33 33 H 1.08997 * 109.47148 * 60.06412 * 1 2 3 34 34 H 1.08996 * 109.45799 * 178.62089 * 4 2 1 35 35 H 1.08998 * 109.45967 * 298.59723 * 4 2 1 36 36 H 1.09003 * 109.49839 * 181.31964 * 5 4 2 37 37 H 1.09008 * 109.49974 * 301.38179 * 5 4 2 38 38 H 1.09000 * 109.51672 * 185.70627 * 6 5 4 39 39 H 1.09000 * 109.43197 * 65.41967 * 6 5 4 40 40 H 1.09001 * 109.47472 * 60.00402 * 10 8 7 41 41 H 1.09001 * 109.47680 * 299.99914 * 10 8 7 42 42 H 1.08001 * 119.92712 * 0.02562 * 12 11 10 43 43 H 1.07997 * 119.96541 * 179.97438 * 13 12 11 44 44 H 1.07996 * 120.03574 * 180.32012 * 14 13 12 45 45 H 0.97006 * 120.00297 * 180.02562 * 20 19 17 46 46 H 1.08005 * 120.03303 * 0.02562 * 25 11 10 47 47 H 1.09003 * 109.47736 * 298.26363 * 28 26 7 48 48 H 1.09004 * 109.47299 * 58.26723 * 28 26 7 49 49 H 1.08993 * 109.46900 * 304.85003 * 29 28 26 50 50 H 1.08994 * 109.47066 * 64.85180 * 29 28 26 51 51 H 0.96699 * 114.00307 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5043 -2.1559 1.2657 6 6 2.0103 -2.9024 0.0328 7 7 1.6522 -2.1380 -1.1698 8 6 0.9745 -2.7218 -2.1781 9 8 0.7673 -2.1093 -3.2042 10 6 0.4744 -4.1357 -2.0304 11 6 -0.2444 -4.5483 -3.2891 12 6 -1.6041 -4.3261 -3.4126 13 6 -2.2673 -4.7037 -4.5657 14 6 -1.5722 -5.2982 -5.6008 15 6 -0.2083 -5.5277 -5.4775 16 8 0.4765 -6.1173 -6.4905 17 6 -0.2033 -6.3595 -7.6294 18 1 -1.2640 -6.1619 -7.6775 19 6 0.4604 -6.8568 -8.7405 20 7 1.7523 -7.0976 -8.6819 21 14 -0.4801 -7.1851 -10.3208 22 1 -0.4664 -5.9652 -11.1675 23 1 0.1617 -8.3046 -11.0554 24 1 -1.8834 -7.5463 -9.9958 25 6 0.4549 -5.1481 -4.3175 26 6 2.0413 -0.7235 -1.2498 27 1 3.1273 -0.6455 -1.3010 28 6 1.4222 -0.0910 -2.4978 29 6 1.7934 1.3922 -2.5555 30 8 1.1240 2.0083 -3.6575 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8905 34 1 3.1311 -0.7439 1.2347 35 1 1.6992 -0.1962 2.1388 36 1 1.8498 -2.6630 2.1667 37 1 0.4145 -2.1362 1.2547 38 1 1.5490 -3.8890 -0.0105 39 1 3.0939 -3.0056 0.0907 40 1 -0.2112 -4.1922 -1.1849 41 1 1.3185 -4.8037 -1.8589 42 1 -2.1488 -3.8567 -2.6068 43 1 -3.3290 -4.5293 -4.6590 44 1 -2.0897 -5.5882 -6.5032 45 1 2.2167 -7.4452 -9.4594 46 1 1.5164 -5.3220 -4.2202 47 1 1.8012 -0.5952 -3.3868 48 1 0.3377 -0.1928 -2.4569 49 1 1.4906 1.8788 -1.6284 50 1 2.8712 1.4923 -2.6831 51 1 1.3137 2.9514 -3.7556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855539332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:55 Heat of formation + Delta-G solvation = -104.331472 kcal Electronic energy + Delta-G solvation = -31444.358454 eV Core-core repulsion = 27308.694771 eV Total energy + Delta-G solvation = -4135.663683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.90835 -40.73644 -39.10262 -38.04026 -37.82274 -35.08913 -34.33089 -33.91233 -33.20412 -30.91392 -30.33291 -28.77877 -27.63441 -27.24487 -25.70257 -24.57632 -23.30137 -22.80188 -22.09302 -21.12484 -19.52608 -19.28595 -18.74498 -18.47076 -17.67723 -17.15832 -16.76286 -16.62070 -16.52109 -16.14717 -15.97011 -15.53833 -15.43110 -15.32633 -14.94212 -14.77969 -14.68325 -14.38649 -14.21417 -14.03766 -13.93812 -13.59959 -13.53639 -13.00687 -12.92433 -12.84094 -12.69012 -12.56078 -12.46611 -12.32906 -12.25235 -12.14854 -12.10499 -11.84160 -11.79583 -11.34593 -11.29974 -11.20905 -10.83109 -10.81499 -10.02884 -9.59870 -9.48793 -8.97996 -8.47893 -6.16451 0.51835 0.75119 1.32504 1.42883 1.50611 1.70600 2.01782 2.17043 2.82502 3.12264 3.29045 3.44149 3.71975 3.78084 3.87782 3.92525 4.02895 4.09013 4.12504 4.18610 4.28641 4.30130 4.34177 4.40254 4.46655 4.50904 4.57039 4.58842 4.61792 4.67864 4.72260 4.72694 4.83320 4.91376 5.01679 5.06104 5.11444 5.12074 5.19260 5.24010 5.28224 5.30851 5.33843 5.45078 5.56542 5.64277 5.72015 5.74879 5.78931 6.02108 6.22131 6.47957 6.92166 6.96652 7.31941 7.78267 8.75856 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.002551 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.272709 B =10975.015943 C =11689.108407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.111 4.111 5 C -0.135 4.135 6 C 0.097 3.903 7 N -0.606 5.606 8 C 0.510 3.490 9 O -0.562 6.562 10 C -0.092 4.092 11 C -0.022 4.022 12 C -0.180 4.180 13 C -0.073 4.073 14 C -0.247 4.247 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.415 4.415 18 H 0.099 0.901 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.266 1.266 23 H -0.267 1.267 24 H -0.252 1.252 25 C -0.192 4.192 26 C 0.156 3.844 27 H 0.078 0.922 28 C -0.109 4.109 29 C 0.070 3.930 30 O -0.600 6.600 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.273 0.727 46 H 0.105 0.895 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.069 0.931 50 H 0.053 0.947 51 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 15.100 26.091 30.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.112 0.888 4 C -0.149 4.149 5 C -0.172 4.172 6 C -0.025 4.025 7 N -0.340 5.340 8 C 0.300 3.700 9 O -0.441 6.441 10 C -0.131 4.131 11 C -0.023 4.023 12 C -0.199 4.199 13 C -0.091 4.091 14 C -0.267 4.267 15 C 0.063 3.937 16 O -0.142 6.142 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.838 3.162 22 H -0.191 1.191 23 H -0.192 1.192 24 H -0.175 1.175 25 C -0.211 4.211 26 C 0.053 3.947 27 H 0.096 0.904 28 C -0.147 4.147 29 C -0.008 4.008 30 O -0.408 6.408 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.337 14.657 25.354 29.287 hybrid contribution 0.136 0.221 -1.393 1.418 sum -0.201 14.878 23.960 28.204 Atomic orbital electron populations 1.21870 0.95336 1.01726 1.01359 1.21582 0.96232 0.99989 0.94030 0.88811 1.21552 1.01024 0.95508 0.96801 1.21901 1.01649 0.96101 0.97598 1.22013 1.01553 0.95805 0.83104 1.48153 1.56115 1.11070 1.18660 1.20890 0.77534 0.88805 0.82811 1.90834 1.58016 1.64954 1.30272 1.20764 1.02308 0.93441 0.96577 1.19179 0.93821 0.95208 0.94062 1.20921 0.93886 1.05692 0.99382 1.21114 1.00189 0.95483 0.92341 1.21283 0.93904 1.09475 1.02003 1.19855 0.92077 0.92183 0.89560 1.83933 1.39322 1.69342 1.21553 1.21824 0.94219 1.45026 0.87996 0.88327 1.26614 0.97006 0.96131 1.02372 1.70188 1.10006 1.43854 1.32010 0.84585 0.78078 0.78576 0.74929 1.19076 1.19181 1.17515 1.20186 0.99198 1.07983 0.93752 1.21188 0.98571 0.80176 0.94761 0.90394 1.21895 1.01337 0.93500 0.97959 1.22459 0.95729 0.93590 0.88986 1.86519 1.73085 1.29099 1.52118 0.93070 0.91214 0.94346 0.90884 0.90160 0.88396 0.91385 0.88069 0.90084 0.84505 0.86467 0.83889 0.83821 0.86483 0.91838 0.87732 0.92725 0.92607 0.91338 0.92906 0.75566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.20 71.98 0.59 -1.63 16 2 C -0.10 -1.25 2.26 -10.71 -0.02 -1.27 16 3 H 0.09 0.94 6.63 -2.39 -0.02 0.93 16 4 C -0.11 -0.88 5.43 30.62 0.17 -0.71 16 5 C -0.13 -1.03 5.72 30.53 0.17 -0.86 16 6 C 0.10 1.11 6.32 86.22 0.54 1.65 16 7 N -0.61 -12.19 2.42 -795.85 -1.92 -14.12 16 8 C 0.51 14.68 7.53 87.65 0.66 15.34 16 9 O -0.56 -22.41 11.59 -3.04 -0.04 -22.44 16 10 C -0.09 -2.30 4.18 29.10 0.12 -2.18 16 11 C -0.02 -0.81 4.37 -19.88 -0.09 -0.90 16 12 C -0.18 -6.28 9.70 22.30 0.22 -6.06 16 13 C -0.07 -2.81 10.04 22.25 0.22 -2.59 16 14 C -0.25 -11.87 9.17 22.39 0.21 -11.67 16 15 C 0.11 6.16 6.65 22.58 0.15 6.31 16 16 O -0.23 -15.12 9.76 -22.77 -0.22 -15.34 16 17 C -0.41 -25.68 9.49 67.92 0.64 -25.04 16 18 H 0.10 5.65 5.20 -2.91 -0.02 5.64 16 19 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 20 N -0.92 -59.13 13.67 21.61 0.30 -58.83 16 21 Si 1.02 45.15 29.55 68.60 2.03 47.18 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 25 C -0.19 -9.01 9.64 22.39 0.22 -8.79 16 26 C 0.16 3.00 2.74 44.97 0.12 3.13 16 27 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 28 C -0.11 -2.99 3.01 30.59 0.09 -2.90 16 29 C 0.07 1.46 6.77 71.98 0.49 1.95 16 30 O -0.60 -15.07 13.66 -148.98 -2.04 -17.10 16 31 H 0.05 0.87 5.97 -2.39 -0.01 0.85 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.76 6.35 -2.39 -0.02 0.75 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 35 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.07 0.62 6.34 -2.38 -0.02 0.61 16 38 H 0.10 0.92 5.93 -2.39 -0.01 0.90 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.14 2.32 7.85 -2.39 -0.02 2.30 16 41 H 0.12 2.49 7.67 -2.39 -0.02 2.48 16 42 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 43 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.12 5.67 5.63 -2.91 -0.02 5.65 16 45 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 46 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 47 H 0.05 2.03 6.23 -2.39 -0.01 2.01 16 48 H 0.06 1.82 5.52 -2.38 -0.01 1.80 16 49 H 0.07 1.04 6.29 -2.39 -0.02 1.02 16 50 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.39 5.41 9.12 -74.06 -0.68 4.73 16 Total: -1.00 -88.91 392.89 3.36 -85.55 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.28 Total: 32.30 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 4.97 Total: -37.19 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.63 Total: -72.95 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -2.29 Total: -54.89 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -88.91 3.36 -85.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855539332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.778 kcal (2) G-P(sol) polarization free energy of solvation -88.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds