Wall clock time and date at job start Wed Apr 1 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00102 * 2 1 4 4 H 1.09006 * 109.46884 * 34.63803 * 3 2 1 5 5 C 1.52996 * 109.47075 * 154.63279 * 3 2 1 6 6 N 1.46501 * 109.47305 * 293.34926 * 5 3 2 7 7 C 1.34777 * 120.00091 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00008 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00185 * 179.97438 * 7 6 5 10 10 C 1.50696 * 109.47319 * 179.97438 * 9 7 6 11 11 C 1.38321 * 119.96650 * 269.72436 * 10 9 7 12 12 C 1.38276 * 120.14054 * 179.76796 * 11 10 9 13 13 C 1.38122 * 120.06827 * 0.50707 * 12 11 10 14 14 C 1.38858 * 119.92892 * 359.74750 * 13 12 11 15 15 O 1.35754 * 120.07137 * 179.97438 * 14 13 12 16 16 C 1.34829 * 116.99739 * 5.82240 * 15 14 13 17 17 H 1.07998 * 119.99927 * 5.15262 * 16 15 14 18 18 C 1.38655 * 119.99887 * 185.14336 * 16 15 14 19 19 N 1.31554 * 120.00199 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99849 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47290 * 60.00291 * 20 18 16 22 22 H 1.48505 * 109.46916 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47237 * 300.00186 * 20 18 16 24 24 C 1.38082 * 119.96468 * 89.99791 * 10 9 7 25 25 C 1.53004 * 109.47311 * 274.63446 * 3 2 1 26 26 C 1.54264 * 110.03071 * 295.04242 * 25 3 2 27 27 C 1.54883 * 104.19629 * 217.10300 * 26 25 3 28 28 C 1.54896 * 102.74728 * 37.94468 * 27 26 25 29 29 C 1.53871 * 110.03176 * 177.87330 * 25 3 2 30 30 H 1.08997 * 109.47113 * 184.98899 * 1 2 3 31 31 H 1.09000 * 109.46643 * 304.98991 * 1 2 3 32 32 H 1.09000 * 109.46880 * 64.98928 * 1 2 3 33 33 H 1.09004 * 109.47370 * 173.34697 * 5 3 2 34 34 H 1.08994 * 109.47270 * 53.34845 * 5 3 2 35 35 H 0.97000 * 119.99941 * 359.97438 * 6 5 3 36 36 H 1.09004 * 109.47063 * 299.99883 * 9 7 6 37 37 H 1.09004 * 109.46952 * 59.99150 * 9 7 6 38 38 H 1.08006 * 119.92949 * 359.97438 * 11 10 9 39 39 H 1.07998 * 119.96826 * 180.25586 * 12 11 10 40 40 H 1.08000 * 120.03737 * 179.77114 * 13 12 11 41 41 H 0.97000 * 120.00403 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.03484 * 359.95846 * 24 10 9 43 43 H 1.09004 * 110.01443 * 56.48265 * 25 3 2 44 44 H 1.09006 * 110.48700 * 335.78736 * 26 25 3 45 45 H 1.09002 * 110.48746 * 98.42313 * 26 25 3 46 46 H 1.09001 * 110.75780 * 279.62949 * 27 26 25 47 47 H 1.08997 * 110.91697 * 156.33078 * 27 26 25 48 48 H 1.08997 * 110.48641 * 203.37804 * 28 27 26 49 49 H 1.09001 * 110.60023 * 80.78948 * 28 27 26 50 50 H 1.08997 * 110.03563 * 238.56759 * 29 25 3 51 51 H 1.09002 * 110.03214 * 0.02562 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3856 1.9813 0.5842 5 6 3.4084 1.2412 0.6180 6 7 3.2991 0.9031 2.0392 7 6 4.4109 0.7913 2.7928 8 8 5.5019 0.9702 2.2942 9 6 4.2985 0.4441 4.2550 10 6 5.6756 0.3807 4.8636 11 6 6.3710 -0.8149 4.8762 12 6 7.6368 -0.8761 5.4294 13 6 8.2065 0.2549 5.9808 14 6 7.5088 1.4554 5.9745 15 8 8.0657 2.5687 6.5161 16 6 9.3437 2.4721 6.9348 17 1 9.9032 1.5656 6.7566 18 6 9.9397 3.5365 7.5938 19 7 9.2581 4.6405 7.8111 20 14 11.7105 3.4028 8.1731 21 1 12.5965 3.1622 7.0059 22 1 12.1082 4.6661 8.8450 23 1 11.8346 2.2737 9.1297 24 6 6.2396 1.5149 5.4133 25 6 2.1113 1.8188 -1.4378 26 6 3.0914 0.9421 -2.2443 27 6 3.8235 1.9444 -3.1707 28 6 3.9967 3.1865 -2.2615 29 6 2.6868 3.2458 -1.4488 30 1 -0.3633 -1.0237 0.0894 31 1 -0.3632 0.5893 0.8419 32 1 -0.3633 0.4345 -0.9313 33 1 3.8977 2.2094 0.5114 34 1 3.9967 0.4788 0.1074 35 1 2.4265 0.7604 2.4381 36 1 3.7101 1.2067 4.7653 37 1 3.8093 -0.5241 4.3619 38 1 5.9257 -1.7019 4.4499 39 1 8.1789 -1.8102 5.4340 40 1 9.1936 0.2056 6.4161 41 1 9.6749 5.3850 8.2725 42 1 5.6946 2.4472 5.4065 43 1 1.1276 1.8093 -1.9073 44 1 3.8004 0.4505 -1.5780 45 1 2.5469 0.2049 -2.8343 46 1 3.2117 2.1845 -4.0403 47 1 4.7931 1.5530 -3.4786 48 1 4.1128 4.0872 -2.8642 49 1 4.8520 3.0597 -1.5979 50 1 1.9829 3.9287 -1.9244 51 1 2.8945 3.5725 -0.4298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856155198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:33 Heat of formation + Delta-G solvation = -123.410196 kcal Electronic energy + Delta-G solvation = -30100.217494 eV Core-core repulsion = 25963.726495 eV Total energy + Delta-G solvation = -4136.490999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.24814 -40.68362 -39.98122 -38.18147 -37.81448 -35.62338 -34.33997 -33.50937 -31.87841 -30.86729 -29.63709 -29.06325 -27.87709 -27.29325 -26.61438 -23.90087 -23.26447 -22.75212 -21.63723 -21.38913 -20.23315 -19.48348 -18.78989 -18.06222 -17.89477 -17.41585 -16.81092 -16.58053 -16.44766 -16.21586 -16.01442 -15.88355 -15.60928 -15.44389 -15.17959 -14.94387 -14.73657 -14.43546 -14.31542 -14.02880 -13.88102 -13.61929 -13.46796 -12.95458 -12.85464 -12.75957 -12.57934 -12.44322 -12.38799 -12.21425 -12.12371 -12.11248 -11.96366 -11.90727 -11.79438 -11.45170 -11.26533 -11.22977 -11.00246 -10.78480 -10.42616 -10.05835 -9.62544 -8.97087 -8.46751 -6.15060 0.53083 0.76602 1.33713 1.45183 1.50358 1.69629 2.17310 2.22496 2.74198 2.85567 3.19240 3.44517 3.60572 3.66221 3.71737 3.82762 3.99915 4.08718 4.11421 4.17135 4.29225 4.33551 4.43491 4.49775 4.53519 4.57379 4.59820 4.61561 4.65442 4.66674 4.71199 4.74744 4.77507 4.83603 4.92838 4.98642 5.02942 5.06515 5.07789 5.13057 5.23348 5.31820 5.32278 5.40791 5.44802 5.51249 5.65742 5.73762 5.76461 6.02976 6.24210 6.25134 6.58571 6.97707 7.32008 7.79402 8.76707 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.002051 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.052819 B =13650.275195 C =14630.824185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.094 3.906 4 H 0.085 0.915 5 C 0.121 3.879 6 N -0.714 5.714 7 C 0.513 3.487 8 O -0.580 6.580 9 C -0.090 4.090 10 C -0.025 4.025 11 C -0.182 4.182 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.111 3.889 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.098 0.902 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.192 4.192 25 C -0.106 4.106 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.131 4.131 29 C -0.122 4.122 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.416 0.584 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.049 0.951 50 H 0.080 0.920 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.457 -9.449 -18.772 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.036 3.964 4 H 0.103 0.897 5 C -0.002 4.002 6 N -0.368 5.368 7 C 0.300 3.700 8 O -0.459 6.459 9 C -0.130 4.130 10 C -0.026 4.026 11 C -0.200 4.200 12 C -0.092 4.092 13 C -0.266 4.266 14 C 0.061 3.939 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.180 1.180 24 C -0.211 4.211 25 C -0.125 4.125 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.169 4.169 29 C -0.159 4.159 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.253 0.747 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.099 0.901 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.662 -9.063 -19.009 29.502 hybrid contribution 0.597 0.564 0.539 0.982 sum -20.065 -8.500 -18.470 28.565 Atomic orbital electron populations 1.22987 0.79540 1.03747 1.01018 1.87964 1.21245 1.27163 1.95115 1.22344 0.92787 0.85392 0.95901 0.89745 1.21530 0.97063 1.01003 0.80646 1.45761 1.09288 1.71762 1.09945 1.20936 0.83805 0.75916 0.89298 1.90754 1.29044 1.51025 1.75030 1.20697 0.94602 1.07179 0.90491 1.19194 0.95846 0.92145 0.95399 1.20974 0.95752 0.98018 1.05268 1.21127 0.95424 0.97280 0.95369 1.21298 1.02268 0.93565 1.09494 1.19889 0.93603 0.87279 0.93097 1.83938 1.28653 1.31682 1.69779 1.21759 0.85663 1.03549 1.38067 0.88440 1.26602 1.05378 0.93890 0.96228 1.70178 1.39600 1.05113 1.41119 0.84650 0.73955 0.78661 0.78933 1.18446 1.19375 1.17954 1.20212 0.94705 0.99455 1.06743 1.22211 1.00581 0.94981 0.94762 1.22423 0.97790 0.97577 0.97844 1.22509 1.00366 0.95254 0.98058 1.22395 0.97445 0.98766 0.98272 1.22236 0.97120 0.95966 1.00598 0.88828 0.92628 0.93301 0.91038 0.92171 0.74683 0.85885 0.84010 0.83664 0.83754 0.86465 0.91825 0.87462 0.88972 0.92483 0.91228 0.90439 0.92060 0.90943 0.93228 0.90119 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.84 113.37 1.23 1.41 16 2 O -0.40 -5.64 10.12 -148.98 -1.51 -7.15 16 3 C 0.09 1.27 1.79 30.59 0.05 1.32 16 4 H 0.08 0.86 7.78 -2.38 -0.02 0.84 16 5 C 0.12 2.45 4.69 86.38 0.40 2.86 16 6 N -0.71 -14.18 5.52 -463.06 -2.56 -16.74 16 7 C 0.51 14.53 7.82 87.66 0.69 15.22 16 8 O -0.58 -23.27 16.03 -3.03 -0.05 -23.32 16 9 C -0.09 -2.19 5.83 29.10 0.17 -2.02 16 10 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 11 C -0.18 -6.22 9.70 22.30 0.22 -6.01 16 12 C -0.07 -2.80 10.04 22.25 0.22 -2.57 16 13 C -0.25 -11.70 9.13 22.39 0.20 -11.49 16 14 C 0.11 5.98 6.65 22.58 0.15 6.13 16 15 O -0.23 -14.88 9.76 -22.77 -0.22 -15.10 16 16 C -0.41 -25.39 9.44 67.92 0.64 -24.75 16 17 H 0.10 5.53 5.29 -2.91 -0.02 5.51 16 18 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 19 N -0.92 -58.42 13.67 21.61 0.30 -58.13 16 20 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 C -0.19 -8.85 9.65 22.39 0.22 -8.64 16 25 C -0.11 -1.33 2.90 -10.07 -0.03 -1.35 16 26 C -0.12 -1.80 5.97 31.67 0.19 -1.61 16 27 C -0.12 -1.78 6.91 31.89 0.22 -1.56 16 28 C -0.13 -2.04 6.83 31.67 0.22 -1.82 16 29 C -0.12 -1.59 5.83 31.32 0.18 -1.41 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.30 7.97 -2.39 -0.02 0.28 16 32 H 0.05 0.31 7.60 -2.39 -0.02 0.29 16 33 H 0.07 1.64 6.45 -2.38 -0.02 1.63 16 34 H 0.06 1.48 6.18 -2.39 -0.01 1.46 16 35 H 0.42 5.29 8.47 -92.71 -0.79 4.50 16 36 H 0.12 2.44 8.09 -2.39 -0.02 2.42 16 37 H 0.14 2.25 8.08 -2.38 -0.02 2.24 16 38 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.12 5.60 5.71 -2.91 -0.02 5.58 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 42 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.09 0.91 7.58 -2.39 -0.02 0.89 16 44 H 0.06 1.09 5.55 -2.38 -0.01 1.08 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.06 0.91 6.51 -2.39 -0.02 0.90 16 Total: -1.00 -84.19 410.60 3.50 -80.70 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.15 Total: 31.38 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 5.35 Total: -38.24 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -2.26 Total: -74.86 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.78 Total: -45.57 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -84.19 3.50 -80.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856155198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.712 kcal (2) G-P(sol) polarization free energy of solvation -84.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds