Wall clock time and date at job start Wed Apr 1 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99850 * 2 1 4 4 H 1.08994 * 109.47614 * 4.49913 * 3 2 1 5 5 C 1.52997 * 109.46661 * 244.49906 * 3 2 1 6 6 N 1.46499 * 109.47238 * 59.92031 * 5 3 2 7 7 C 1.34777 * 120.00166 * 181.43577 * 6 5 3 8 8 O 1.21283 * 119.99894 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99882 * 179.97438 * 7 6 5 10 10 C 1.50702 * 109.47105 * 179.97438 * 9 7 6 11 11 C 1.38324 * 119.96698 * 270.02710 * 10 9 7 12 12 C 1.38276 * 120.13995 * 180.02562 * 11 10 9 13 13 C 1.38125 * 120.06911 * 359.67454 * 12 11 10 14 14 C 1.38859 * 119.92597 * 0.59954 * 13 12 11 15 15 O 1.35754 * 120.06817 * 179.70466 * 14 13 12 16 16 C 1.34824 * 116.99678 * 358.75064 * 15 14 13 17 17 H 1.07999 * 120.00771 * 5.52254 * 16 15 14 18 18 C 1.38664 * 120.00156 * 185.51815 * 16 15 14 19 19 N 1.31560 * 119.99451 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00426 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47007 * 60.00107 * 20 18 16 22 22 H 1.48501 * 109.47363 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47043 * 300.00095 * 20 18 16 24 24 C 1.38074 * 119.96462 * 89.99831 * 10 9 7 25 25 C 1.53003 * 109.47020 * 124.50349 * 3 2 1 26 26 C 1.54268 * 110.03471 * 57.90680 * 25 3 2 27 27 C 1.54967 * 104.15970 * 217.13627 * 26 25 3 28 28 C 1.54889 * 102.77594 * 37.88723 * 27 26 25 29 29 C 1.53870 * 110.03223 * 300.68504 * 25 3 2 30 30 H 1.08999 * 109.46936 * 65.99999 * 1 2 3 31 31 H 1.08993 * 109.47069 * 185.99854 * 1 2 3 32 32 H 1.08998 * 109.47426 * 306.00426 * 1 2 3 33 33 H 1.08996 * 109.47825 * 299.91656 * 5 3 2 34 34 H 1.09003 * 109.47313 * 179.91501 * 5 3 2 35 35 H 0.96999 * 119.99599 * 1.42665 * 6 5 3 36 36 H 1.09001 * 109.46856 * 60.00239 * 9 7 6 37 37 H 1.08992 * 109.47204 * 300.00012 * 9 7 6 38 38 H 1.08000 * 119.92888 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.96700 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.03903 * 180.32344 * 13 12 11 41 41 H 0.96995 * 119.99540 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.03660 * 0.05209 * 24 10 9 43 43 H 1.09001 * 110.01291 * 179.29624 * 25 3 2 44 44 H 1.09003 * 110.48157 * 335.77985 * 26 25 3 45 45 H 1.08997 * 110.48979 * 98.42394 * 26 25 3 46 46 H 1.08995 * 110.71561 * 279.57105 * 27 26 25 47 47 H 1.09000 * 110.92091 * 156.29398 * 27 26 25 48 48 H 1.09005 * 110.48216 * 203.40541 * 28 27 26 49 49 H 1.08999 * 110.60165 * 80.81845 * 28 27 26 50 50 H 1.08991 * 110.03529 * 238.56992 * 29 25 3 51 51 H 1.09002 * 110.03411 * 359.95619 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2222 2.0541 0.0806 5 6 2.7849 1.5187 -1.3020 6 7 1.8720 1.3888 -2.4404 7 6 2.3415 1.5095 -3.6979 8 8 3.5198 1.7260 -3.8871 9 6 1.4024 1.3753 -4.8689 10 6 2.1720 1.5511 -6.1527 11 6 2.3137 2.8108 -6.7063 12 6 3.0186 2.9761 -7.8844 13 6 3.5893 1.8840 -8.5085 14 6 3.4440 0.6174 -7.9582 15 8 3.9986 -0.4587 -8.5724 16 6 4.6560 -0.2327 -9.7276 17 1 4.8000 0.7786 -10.0781 18 6 5.1474 -1.2987 -10.4658 19 7 4.9716 -2.5307 -10.0390 20 14 6.0588 -0.9856 -12.0659 21 1 7.2581 -0.1521 -11.7975 22 1 6.4782 -2.2811 -12.6584 23 1 5.1640 -0.2747 -13.0143 24 6 2.7354 0.4547 -6.7747 25 6 2.9641 1.4390 1.1888 26 6 4.0556 0.3513 1.1154 27 6 4.2847 -0.0561 2.5929 28 6 2.8548 -0.0104 3.1865 29 6 2.2012 1.2097 2.5052 30 1 -0.3633 0.4180 -0.9388 31 1 -0.3633 -1.0220 0.1074 32 1 -0.3634 0.6041 0.8313 33 1 3.5740 0.7711 -1.3820 34 1 3.2271 2.5150 -1.3027 35 1 0.9296 1.2159 -2.2890 36 1 0.6277 2.1392 -4.8027 37 1 0.9414 0.3878 -4.8536 38 1 1.8721 3.6668 -6.2179 39 1 3.1271 3.9608 -8.3145 40 1 4.1442 2.0144 -9.4258 41 1 5.3150 -3.2764 -10.5556 42 1 2.6241 -0.5286 -6.3421 43 1 3.4222 2.4281 1.1902 44 1 3.7052 -0.5020 0.5345 45 1 4.9707 0.7575 0.6845 46 1 4.9343 0.6612 3.0943 47 1 4.6986 -1.0623 2.6595 48 1 2.8945 0.1317 4.2665 49 1 2.3088 -0.9216 2.9423 50 1 2.2897 2.0870 3.1458 51 1 1.1511 1.0040 2.2972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856155199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:39 Heat of formation + Delta-G solvation = -101.831052 kcal Electronic energy + Delta-G solvation = -29961.041203 eV Core-core repulsion = 25825.485946 eV Total energy + Delta-G solvation = -4135.555257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.20225 -39.38284 -38.61294 -37.06229 -36.41093 -34.57823 -32.38412 -32.04728 -31.27939 -29.17077 -29.04372 -27.79670 -27.03431 -26.07457 -25.12527 -22.84933 -21.61976 -21.22724 -20.80701 -20.34691 -19.74943 -17.68334 -17.28412 -16.91950 -16.85611 -16.27928 -16.16213 -15.39836 -15.26751 -14.96266 -14.84738 -14.50916 -14.32530 -14.28102 -13.71357 -13.57304 -13.51630 -13.31720 -13.23025 -13.03509 -12.54094 -12.42846 -12.32619 -11.87404 -11.71552 -11.54832 -11.45075 -11.33770 -11.27931 -11.19934 -10.95545 -10.84573 -10.78609 -10.75623 -10.73062 -10.54922 -10.40687 -9.98650 -9.60635 -9.26626 -9.07110 -8.76684 -7.98435 -7.13586 -6.37425 -3.96243 2.17172 2.47443 2.84247 3.17133 3.17903 3.21578 3.23258 3.34201 4.02850 4.16692 4.32178 4.40573 4.56588 4.63589 4.65404 4.89562 4.94125 4.98151 5.02520 5.15938 5.17365 5.18317 5.26071 5.28755 5.32080 5.34394 5.37920 5.43480 5.51794 5.56808 5.59905 5.65732 5.72384 5.75663 5.82299 5.83611 5.96779 6.00238 6.00857 6.17807 6.25486 6.39950 6.42033 6.73761 6.81562 6.99959 7.14523 7.34787 7.44229 7.48805 7.52231 7.91133 8.07889 8.37969 9.08253 9.79927 10.80881 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.001903 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.625912 B =14711.335584 C =15482.283225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.085 3.915 4 H 0.068 0.932 5 C 0.108 3.892 6 N -0.736 5.736 7 C 0.513 3.487 8 O -0.518 6.518 9 C -0.094 4.094 10 C -0.032 4.032 11 C -0.197 4.197 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.154 3.846 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.174 4.174 25 C -0.098 4.098 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.394 0.606 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.061 0.939 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 8.289 24.722 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C 0.026 3.974 4 H 0.086 0.914 5 C -0.016 4.016 6 N -0.390 5.390 7 C 0.300 3.700 8 O -0.392 6.392 9 C -0.134 4.134 10 C -0.033 4.033 11 C -0.216 4.216 12 C -0.093 4.093 13 C -0.251 4.251 14 C 0.101 3.899 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.194 4.194 25 C -0.117 4.117 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.158 4.158 29 C -0.152 4.152 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.228 0.772 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.415 7.796 24.546 27.421 hybrid contribution -0.219 0.386 -0.734 0.858 sum -9.634 8.182 23.812 26.959 Atomic orbital electron populations 1.22910 0.81291 1.03023 0.99620 1.87994 1.19167 1.26888 1.94852 1.22424 0.95631 0.85415 0.93908 0.91367 1.21731 0.93407 1.02465 0.83989 1.45954 1.11919 1.75455 1.05715 1.20755 0.89548 0.76194 0.83538 1.90762 1.17139 1.46199 1.85057 1.20587 0.97425 1.04306 0.91033 1.18651 0.97856 0.93324 0.93471 1.20335 1.07034 0.95497 0.98750 1.20672 0.96363 0.97367 0.94927 1.21169 1.07720 0.92575 1.03610 1.19289 0.91064 0.87621 0.91939 1.83984 1.60400 1.28699 1.35188 1.21265 1.33420 0.94552 0.97456 0.89188 1.25279 0.97703 0.94371 0.99228 1.70036 1.43397 0.98157 1.38395 0.85790 0.79488 0.77928 0.80262 1.19532 1.20334 1.19562 1.19938 1.04442 0.98345 0.96627 1.22042 0.95850 1.00205 0.93585 1.22409 0.97585 0.98724 0.96897 1.22484 0.96644 1.01214 0.95853 1.22299 0.96147 0.98323 0.99021 1.22103 0.99435 0.98253 0.95412 0.94264 0.89441 0.93956 0.90367 0.90786 0.77187 0.88535 0.88299 0.88005 0.87514 0.85619 0.92074 0.86841 0.89856 0.90198 0.91619 0.91824 0.91645 0.92174 0.91475 0.92038 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.32 101.05 1.04 1.20 16 2 O -0.37 -3.11 8.66 -35.23 -0.30 -3.42 16 3 C 0.08 0.64 1.87 -26.73 -0.05 0.59 16 4 H 0.07 0.42 7.58 -51.93 -0.39 0.02 16 5 C 0.11 1.12 5.16 -4.04 -0.02 1.10 16 6 N -0.74 -8.03 5.44 -60.29 -0.33 -8.36 16 7 C 0.51 7.73 7.82 -10.98 -0.09 7.65 16 8 O -0.52 -10.44 16.03 5.55 0.09 -10.35 16 9 C -0.09 -1.29 5.83 -29.03 -0.17 -1.46 16 10 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 11 C -0.20 -3.67 9.70 -39.54 -0.38 -4.05 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.23 -5.36 9.17 -39.39 -0.36 -5.72 16 14 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 15 O -0.18 -5.34 9.76 0.05 0.00 -5.34 16 16 C -0.39 -11.33 9.48 30.89 0.29 -11.04 16 17 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -26.07 13.67 55.48 0.76 -25.31 16 20 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.17 -3.94 9.65 -39.40 -0.38 -4.32 16 25 C -0.10 -0.70 2.83 -89.50 -0.25 -0.95 16 26 C -0.12 -0.98 5.21 -25.03 -0.13 -1.11 16 27 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 28 C -0.12 -0.80 6.83 -25.07 -0.17 -0.97 16 29 C -0.11 -0.72 6.22 -25.61 -0.16 -0.88 16 30 H 0.04 0.18 6.85 -51.93 -0.36 -0.17 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.19 7.25 -51.93 -0.38 -0.19 16 33 H 0.08 0.98 7.22 -51.93 -0.37 0.60 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.39 3.15 6.89 -40.82 -0.28 2.86 16 36 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.13 2.88 5.62 -52.49 -0.30 2.59 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.79 7.03 -51.93 -0.36 0.43 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.06 0.39 6.33 -51.93 -0.33 0.06 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -35.51 409.89 -8.93 -44.44 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.09 Total: 5.34 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -2.21 Total: -19.31 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.43 Total: -33.67 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.22 Total: -19.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.51 -8.93 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856155199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.387 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds