Wall clock time and date at job start Wed Apr 1 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99850 * 2 1 4 4 H 1.08994 * 109.47614 * 4.49913 * 3 2 1 5 5 C 1.52997 * 109.46661 * 244.49906 * 3 2 1 6 6 N 1.46499 * 109.47238 * 59.92031 * 5 3 2 7 7 C 1.34777 * 120.00166 * 181.43577 * 6 5 3 8 8 O 1.21283 * 119.99894 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99882 * 179.97438 * 7 6 5 10 10 C 1.50702 * 109.47105 * 179.97438 * 9 7 6 11 11 C 1.38324 * 119.96698 * 270.02710 * 10 9 7 12 12 C 1.38276 * 120.13995 * 180.02562 * 11 10 9 13 13 C 1.38125 * 120.06911 * 359.67454 * 12 11 10 14 14 C 1.38859 * 119.92597 * 0.59954 * 13 12 11 15 15 O 1.35754 * 120.06817 * 179.70466 * 14 13 12 16 16 C 1.34824 * 116.99678 * 358.75064 * 15 14 13 17 17 H 1.07999 * 120.00771 * 5.52254 * 16 15 14 18 18 C 1.38664 * 120.00156 * 185.51815 * 16 15 14 19 19 N 1.31560 * 119.99451 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00426 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47007 * 60.00107 * 20 18 16 22 22 H 1.48501 * 109.47363 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47043 * 300.00095 * 20 18 16 24 24 C 1.38074 * 119.96462 * 89.99831 * 10 9 7 25 25 C 1.53003 * 109.47020 * 124.50349 * 3 2 1 26 26 C 1.54268 * 110.03471 * 57.90680 * 25 3 2 27 27 C 1.54967 * 104.15970 * 217.13627 * 26 25 3 28 28 C 1.54889 * 102.77594 * 37.88723 * 27 26 25 29 29 C 1.53870 * 110.03223 * 300.68504 * 25 3 2 30 30 H 1.08999 * 109.46936 * 65.99999 * 1 2 3 31 31 H 1.08993 * 109.47069 * 185.99854 * 1 2 3 32 32 H 1.08998 * 109.47426 * 306.00426 * 1 2 3 33 33 H 1.08996 * 109.47825 * 299.91656 * 5 3 2 34 34 H 1.09003 * 109.47313 * 179.91501 * 5 3 2 35 35 H 0.96999 * 119.99599 * 1.42665 * 6 5 3 36 36 H 1.09001 * 109.46856 * 60.00239 * 9 7 6 37 37 H 1.08992 * 109.47204 * 300.00012 * 9 7 6 38 38 H 1.08000 * 119.92888 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.96700 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.03903 * 180.32344 * 13 12 11 41 41 H 0.96995 * 119.99540 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.03660 * 0.05209 * 24 10 9 43 43 H 1.09001 * 110.01291 * 179.29624 * 25 3 2 44 44 H 1.09003 * 110.48157 * 335.77985 * 26 25 3 45 45 H 1.08997 * 110.48979 * 98.42394 * 26 25 3 46 46 H 1.08995 * 110.71561 * 279.57105 * 27 26 25 47 47 H 1.09000 * 110.92091 * 156.29398 * 27 26 25 48 48 H 1.09005 * 110.48216 * 203.40541 * 28 27 26 49 49 H 1.08999 * 110.60165 * 80.81845 * 28 27 26 50 50 H 1.08991 * 110.03529 * 238.56992 * 29 25 3 51 51 H 1.09002 * 110.03411 * 359.95619 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2222 2.0541 0.0806 5 6 2.7849 1.5187 -1.3020 6 7 1.8720 1.3888 -2.4404 7 6 2.3415 1.5095 -3.6979 8 8 3.5198 1.7260 -3.8871 9 6 1.4024 1.3753 -4.8689 10 6 2.1720 1.5511 -6.1527 11 6 2.3137 2.8108 -6.7063 12 6 3.0186 2.9761 -7.8844 13 6 3.5893 1.8840 -8.5085 14 6 3.4440 0.6174 -7.9582 15 8 3.9986 -0.4587 -8.5724 16 6 4.6560 -0.2327 -9.7276 17 1 4.8000 0.7786 -10.0781 18 6 5.1474 -1.2987 -10.4658 19 7 4.9716 -2.5307 -10.0390 20 14 6.0588 -0.9856 -12.0659 21 1 7.2581 -0.1521 -11.7975 22 1 6.4782 -2.2811 -12.6584 23 1 5.1640 -0.2747 -13.0143 24 6 2.7354 0.4547 -6.7747 25 6 2.9641 1.4390 1.1888 26 6 4.0556 0.3513 1.1154 27 6 4.2847 -0.0561 2.5929 28 6 2.8548 -0.0104 3.1865 29 6 2.2012 1.2097 2.5052 30 1 -0.3633 0.4180 -0.9388 31 1 -0.3633 -1.0220 0.1074 32 1 -0.3634 0.6041 0.8313 33 1 3.5740 0.7711 -1.3820 34 1 3.2271 2.5150 -1.3027 35 1 0.9296 1.2159 -2.2890 36 1 0.6277 2.1392 -4.8027 37 1 0.9414 0.3878 -4.8536 38 1 1.8721 3.6668 -6.2179 39 1 3.1271 3.9608 -8.3145 40 1 4.1442 2.0144 -9.4258 41 1 5.3150 -3.2764 -10.5556 42 1 2.6241 -0.5286 -6.3421 43 1 3.4222 2.4281 1.1902 44 1 3.7052 -0.5020 0.5345 45 1 4.9707 0.7575 0.6845 46 1 4.9343 0.6612 3.0943 47 1 4.6986 -1.0623 2.6595 48 1 2.8945 0.1317 4.2665 49 1 2.3088 -0.9216 2.9423 50 1 2.2897 2.0870 3.1458 51 1 1.1511 1.0040 2.2972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856155199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:38 Heat of formation + Delta-G solvation = -125.245358 kcal Electronic energy + Delta-G solvation = -29962.056524 eV Core-core repulsion = 25825.485946 eV Total energy + Delta-G solvation = -4136.570577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23445 -40.64851 -39.97511 -38.20272 -37.62512 -35.60125 -34.34658 -33.53897 -32.10684 -30.88231 -29.64095 -28.97245 -27.67959 -27.33462 -26.78891 -23.66199 -23.24402 -22.70011 -21.58084 -21.42462 -20.44325 -19.51660 -18.83295 -18.19128 -17.57721 -17.19058 -16.86783 -16.79813 -16.59717 -16.13134 -15.93687 -15.90274 -15.65043 -15.43790 -15.04504 -14.94854 -14.55534 -14.38005 -14.16033 -14.07064 -13.98729 -13.71394 -13.55982 -13.11318 -12.95588 -12.77107 -12.45682 -12.41545 -12.34602 -12.21596 -12.13186 -12.07834 -11.87990 -11.85826 -11.54105 -11.43481 -11.34312 -11.20958 -11.03383 -10.79649 -10.42633 -10.09981 -9.63513 -8.97431 -8.47190 -6.15830 0.52109 0.76255 1.33317 1.45024 1.50306 1.67269 2.17003 2.20444 2.80465 2.84912 3.18458 3.43692 3.57332 3.73811 3.80176 3.83972 3.96036 4.08531 4.10521 4.15812 4.31832 4.38757 4.42534 4.49149 4.55712 4.58754 4.61353 4.62862 4.63490 4.70110 4.73907 4.74296 4.83662 4.88660 4.94100 4.99842 5.05036 5.07634 5.11200 5.12685 5.26632 5.30866 5.36007 5.42779 5.50715 5.54966 5.65292 5.72965 5.75531 6.02647 6.23852 6.29987 6.54493 6.97042 7.29380 7.78979 8.76265 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.001903 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.625912 B =14711.335584 C =15482.283225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.392 6.392 3 C 0.094 3.906 4 H 0.094 0.906 5 C 0.107 3.893 6 N -0.714 5.714 7 C 0.513 3.487 8 O -0.579 6.579 9 C -0.091 4.091 10 C -0.026 4.026 11 C -0.180 4.180 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.110 3.890 15 O -0.234 6.234 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.026 4.026 19 N -0.922 5.922 20 Si 1.021 2.979 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.195 4.195 25 C -0.097 4.097 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.120 4.120 29 C -0.110 4.110 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.779 11.518 26.237 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.311 6.311 3 C 0.036 3.964 4 H 0.112 0.888 5 C -0.018 4.018 6 N -0.368 5.368 7 C 0.300 3.700 8 O -0.458 6.458 9 C -0.130 4.130 10 C -0.026 4.026 11 C -0.199 4.199 12 C -0.091 4.091 13 C -0.267 4.267 14 C 0.060 3.940 15 O -0.141 6.141 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.560 5.560 20 Si 0.840 3.160 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.214 4.214 25 C -0.116 4.116 26 C -0.159 4.159 27 C -0.162 4.162 28 C -0.157 4.157 29 C -0.148 4.148 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.164 0.836 37 H 0.137 0.863 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.792 11.059 26.129 30.726 hybrid contribution 0.325 -0.460 -0.938 1.094 sum -11.467 10.598 25.191 29.638 Atomic orbital electron populations 1.23108 0.79825 1.03742 1.00993 1.87993 1.20896 1.27357 1.94881 1.22359 0.95982 0.85923 0.92158 0.88808 1.21795 0.93258 1.01556 0.85144 1.45765 1.12957 1.73402 1.04673 1.20955 0.88751 0.75414 0.84881 1.90755 1.19577 1.49465 1.85993 1.20706 0.97365 1.07341 0.87605 1.19194 0.96328 0.92302 0.94815 1.20979 1.04629 0.96650 0.97597 1.21147 0.95032 0.97891 0.95068 1.21302 1.08601 0.92832 1.03922 1.19898 0.92697 0.88049 0.93312 1.83941 1.62808 1.30979 1.36392 1.21791 1.34022 0.95466 0.97841 0.88233 1.26648 0.98488 0.93809 1.03315 1.70191 1.45815 0.99395 1.40642 0.84627 0.78214 0.78311 0.74896 1.18353 1.19452 1.17900 1.20213 1.05249 0.99613 0.96323 1.22071 0.95468 1.00010 0.94084 1.22371 0.97762 0.98498 0.97278 1.22497 0.97454 1.01111 0.95184 1.22295 0.95401 0.98311 0.99725 1.22088 0.99423 0.98435 0.94808 0.92994 0.89301 0.92320 0.93261 0.90750 0.75047 0.83596 0.86307 0.83337 0.83581 0.86385 0.91843 0.87815 0.88933 0.92406 0.92559 0.91062 0.92203 0.91053 0.92347 0.90722 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.32 113.37 1.17 1.33 16 2 O -0.39 -5.91 8.66 -148.98 -1.29 -7.20 16 3 C 0.09 1.22 1.87 30.59 0.06 1.28 16 4 H 0.09 0.77 7.58 -2.39 -0.02 0.75 16 5 C 0.11 2.09 5.16 86.38 0.45 2.53 16 6 N -0.71 -13.86 5.44 -463.06 -2.52 -16.38 16 7 C 0.51 14.41 7.82 87.66 0.69 15.10 16 8 O -0.58 -23.21 16.03 -3.04 -0.05 -23.26 16 9 C -0.09 -2.18 5.83 29.10 0.17 -2.01 16 10 C -0.03 -0.93 4.37 -19.88 -0.09 -1.01 16 11 C -0.18 -6.03 9.70 22.30 0.22 -5.82 16 12 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 13 C -0.25 -11.67 9.17 22.39 0.21 -11.46 16 14 C 0.11 5.97 6.65 22.58 0.15 6.12 16 15 O -0.23 -15.03 9.76 -22.72 -0.22 -15.26 16 16 C -0.42 -25.50 9.48 67.92 0.64 -24.85 16 17 H 0.10 5.63 5.20 -2.91 -0.02 5.61 16 18 C -0.03 -1.52 5.49 84.84 0.47 -1.05 16 19 N -0.92 -58.83 13.67 21.62 0.30 -58.54 16 20 Si 1.02 44.65 29.55 68.60 2.03 46.68 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 24 C -0.19 -9.09 9.65 22.39 0.22 -8.87 16 25 C -0.10 -1.23 2.83 -10.07 -0.03 -1.26 16 26 C -0.12 -2.04 5.21 31.70 0.17 -1.87 16 27 C -0.12 -1.75 6.91 31.91 0.22 -1.53 16 28 C -0.12 -1.43 6.83 31.67 0.22 -1.21 16 29 C -0.11 -1.12 6.22 31.32 0.19 -0.92 16 30 H 0.05 0.30 6.85 -2.39 -0.02 0.28 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.31 7.25 -2.39 -0.02 0.30 16 33 H 0.05 1.27 7.22 -2.39 -0.02 1.26 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 5.04 6.89 -92.71 -0.64 4.40 16 36 H 0.15 2.13 8.08 -2.39 -0.02 2.11 16 37 H 0.12 2.45 8.08 -2.39 -0.02 2.43 16 38 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.12 5.61 5.62 -2.91 -0.02 5.59 16 41 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.22 7.03 -2.39 -0.02 1.20 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.07 0.63 6.33 -2.39 -0.02 0.61 16 Total: -1.00 -85.81 409.89 3.87 -81.94 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.29 Total: 30.03 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 5.33 Total: -38.02 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -2.22 Total: -74.91 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.56 Total: -45.72 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -85.81 3.87 -81.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856155199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.301 kcal (2) G-P(sol) polarization free energy of solvation -85.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds