Wall clock time and date at job start Wed Apr 1 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00156 * 2 1 4 4 H 1.08993 * 109.46972 * 20.46192 * 3 2 1 5 5 C 1.53000 * 109.47174 * 260.46148 * 3 2 1 6 6 N 1.46500 * 109.47237 * 63.19463 * 5 3 2 7 7 C 1.34774 * 119.99989 * 185.77871 * 6 5 3 8 8 O 1.21278 * 119.99997 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47122 * 179.97438 * 9 7 6 11 11 C 1.38301 * 119.93313 * 269.72334 * 10 9 7 12 12 C 1.38098 * 120.06998 * 179.71962 * 11 10 9 13 13 C 1.38887 * 119.92724 * 0.57953 * 12 11 10 14 14 O 1.35753 * 120.06785 * 179.67229 * 13 12 11 15 15 C 1.34824 * 117.00085 * 185.61452 * 14 13 12 16 16 H 1.07998 * 119.99766 * 5.19697 * 15 14 13 17 17 C 1.38655 * 119.99958 * 185.20049 * 15 14 13 18 18 N 1.31556 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99900 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47188 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47290 * 119.99900 * 19 17 15 22 22 H 1.48498 * 109.47034 * 240.00137 * 19 17 15 23 23 C 1.38878 * 119.86220 * 359.70178 * 13 12 11 24 24 C 1.38093 * 119.93239 * 359.97438 * 23 13 12 25 25 C 1.53002 * 109.46959 * 140.46192 * 3 2 1 26 26 C 1.54270 * 110.03322 * 57.16499 * 25 3 2 27 27 C 1.54881 * 104.19772 * 217.10788 * 26 25 3 28 28 C 1.54889 * 102.74992 * 37.94162 * 27 26 25 29 29 C 1.53875 * 110.03263 * 300.00156 * 25 3 2 30 30 H 1.08999 * 109.47493 * 185.13734 * 1 2 3 31 31 H 1.09003 * 109.46369 * 305.13553 * 1 2 3 32 32 H 1.08997 * 109.47411 * 65.13199 * 1 2 3 33 33 H 1.09008 * 109.47043 * 303.19220 * 5 3 2 34 34 H 1.09003 * 109.46976 * 183.19878 * 5 3 2 35 35 H 0.96998 * 119.99823 * 5.77176 * 6 5 3 36 36 H 1.08998 * 109.47034 * 60.00191 * 9 7 6 37 37 H 1.08998 * 109.47452 * 299.99907 * 9 7 6 38 38 H 1.08004 * 119.96153 * 359.97438 * 11 10 9 39 39 H 1.07992 * 120.03758 * 180.27625 * 12 11 10 40 40 H 0.97004 * 119.99358 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.03328 * 179.97438 * 23 13 12 42 42 H 1.07999 * 119.96717 * 180.02562 * 24 23 13 43 43 H 1.08997 * 110.01881 * 178.60930 * 25 3 2 44 44 H 1.08998 * 110.48604 * 335.78681 * 26 25 3 45 45 H 1.09003 * 110.48308 * 98.42698 * 26 25 3 46 46 H 1.09002 * 110.75337 * 279.62909 * 27 26 25 47 47 H 1.09006 * 110.91973 * 156.33257 * 27 26 25 48 48 H 1.09000 * 110.48608 * 203.37931 * 28 27 26 49 49 H 1.08996 * 110.60043 * 80.79478 * 28 27 26 50 50 H 1.08998 * 110.03096 * 238.57216 * 29 25 3 51 51 H 1.09003 * 110.03025 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2785 2.0289 0.3592 5 6 2.4361 1.6741 -1.4226 6 7 1.2540 1.7358 -2.2857 7 6 1.3971 1.9298 -3.6117 8 8 2.5046 2.0537 -4.0903 9 6 0.1812 1.9927 -4.4996 10 6 0.6120 2.2161 -5.9263 11 6 0.7429 3.5036 -6.4141 12 6 1.1431 3.7117 -7.7193 13 6 1.4025 2.6262 -8.5459 14 8 1.7896 2.8274 -9.8314 15 6 1.9124 1.7349 -10.6119 16 1 1.6255 0.7653 -10.2325 17 6 2.4070 1.8562 -11.9015 18 7 2.7569 3.0373 -12.3634 19 14 2.5777 0.3424 -12.9826 20 1 2.1195 -0.8551 -12.2334 21 1 1.7482 0.5095 -14.2029 22 1 4.0005 0.1695 -13.3711 23 6 1.2645 1.3345 -8.0549 24 6 0.8704 1.1331 -6.7467 25 6 3.2340 1.3188 0.9183 26 6 4.2481 0.2490 0.4631 27 6 4.8314 -0.3085 1.7851 28 6 3.5969 -0.3319 2.7203 29 6 2.8201 0.9494 2.3536 30 1 -0.3634 -1.0235 0.0920 31 1 -0.3632 0.5915 0.8405 32 1 -0.3634 0.4321 -0.9323 33 1 3.1247 0.9194 -1.8028 34 1 2.9306 2.6455 -1.4135 35 1 0.3683 1.6370 -1.9028 36 1 -0.4593 2.8151 -4.1808 37 1 -0.3695 1.0548 -4.4286 38 1 0.5359 4.3473 -5.7722 39 1 1.2495 4.7174 -8.0983 40 1 3.1033 3.1220 -13.2655 41 1 1.4651 0.4884 -8.6954 42 1 0.7633 0.1289 -6.3642 43 1 3.6991 2.3045 0.9058 44 1 3.7449 -0.5407 -0.0948 45 1 5.0350 0.7017 -0.1403 46 1 5.6011 0.3557 2.1781 47 1 5.2271 -1.3141 1.6424 48 1 3.9087 -0.3033 3.7644 49 1 2.9877 -1.2153 2.5293 50 1 3.0850 1.7555 3.0377 51 1 1.7473 0.7611 2.3959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856158421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:48 Heat of formation + Delta-G solvation = -100.743176 kcal Electronic energy + Delta-G solvation = -29817.882736 eV Core-core repulsion = 25682.374653 eV Total energy + Delta-G solvation = -4135.508083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.24947 -39.36746 -38.63789 -37.17642 -36.44967 -34.55384 -32.45630 -31.81353 -31.00244 -30.08966 -29.07202 -27.62451 -27.02155 -26.00454 -24.95443 -22.85157 -21.91106 -21.21377 -20.84690 -20.27655 -19.71068 -17.92938 -17.36197 -16.99086 -16.88025 -16.40458 -16.18716 -15.36946 -15.31898 -15.00650 -14.55211 -14.50052 -14.38013 -14.17201 -13.68870 -13.57968 -13.54095 -13.37783 -13.29469 -13.10838 -12.64985 -12.58772 -12.35240 -11.90910 -11.74652 -11.49065 -11.44778 -11.38779 -11.31438 -11.22920 -10.95600 -10.87173 -10.86246 -10.82099 -10.71332 -10.53467 -10.37394 -10.05220 -9.60770 -9.29377 -9.10467 -8.77571 -8.08982 -7.10594 -6.40236 -3.98468 2.30557 2.32005 2.81977 3.12713 3.17028 3.20715 3.22775 3.30263 4.01045 4.12515 4.30523 4.37576 4.50927 4.62511 4.63417 4.85489 4.91401 4.96694 5.03463 5.14768 5.15232 5.22471 5.25065 5.27332 5.29839 5.33095 5.35874 5.38345 5.42617 5.49079 5.57992 5.62865 5.68337 5.73178 5.79007 5.79837 5.90856 5.93297 5.98101 6.13626 6.27999 6.35895 6.48071 6.76095 6.77202 6.97439 7.11478 7.29313 7.42732 7.44974 7.50905 7.90092 8.05303 8.36037 9.05713 9.76980 10.78101 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.001759 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.662592 B =15913.954274 C =16411.805740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.085 3.915 4 H 0.067 0.933 5 C 0.100 3.900 6 N -0.741 5.741 7 C 0.508 3.492 8 O -0.518 6.518 9 C -0.080 4.080 10 C -0.170 4.170 11 C -0.060 4.060 12 C -0.192 4.192 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.232 4.232 24 C -0.057 4.057 25 C -0.091 4.091 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.392 0.608 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -5.130 30.761 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C 0.027 3.973 4 H 0.085 0.915 5 C -0.024 4.024 6 N -0.397 5.397 7 C 0.295 3.705 8 O -0.392 6.392 9 C -0.120 4.120 10 C -0.171 4.171 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.251 4.251 24 C -0.075 4.075 25 C -0.110 4.110 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.158 4.158 29 C -0.151 4.151 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.709 -4.898 30.032 30.654 hybrid contribution -0.511 -0.600 -0.315 0.849 sum -4.220 -5.498 29.717 30.515 Atomic orbital electron populations 1.22918 0.81356 1.03095 0.99541 1.87976 1.19147 1.26959 1.94855 1.22427 0.95749 0.85184 0.93969 0.91511 1.21872 0.89047 1.02238 0.89210 1.46198 1.09324 1.76284 1.07870 1.21062 0.91989 0.75766 0.81726 1.90749 1.27112 1.47186 1.74109 1.20407 0.95140 1.03534 0.92895 1.18623 1.11462 0.93693 0.93304 1.20391 0.97814 0.95366 0.94261 1.20144 1.09567 0.97461 0.93925 1.19394 0.91751 0.92922 0.85665 1.83989 1.73930 1.34666 1.15639 1.21369 1.44271 0.86828 0.94127 0.89068 1.25290 0.96175 0.98466 0.96687 1.70054 1.40072 1.22520 1.17193 0.85649 0.78338 0.79943 0.79504 1.19115 1.20183 1.20168 1.21109 1.10118 0.97238 0.96628 1.20511 0.96825 0.96965 0.93194 1.21935 0.94437 1.00308 0.94325 1.22395 0.97507 0.98300 0.97428 1.22476 0.97291 1.00890 0.95559 1.22299 0.96702 0.97996 0.98799 1.22089 1.00312 0.97694 0.95027 0.89395 0.93895 0.94246 0.90241 0.91048 0.77229 0.89097 0.89110 0.87424 0.86557 0.92133 0.85584 0.87846 0.89672 0.90250 0.91629 0.91783 0.91672 0.92160 0.91470 0.92026 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.60 101.05 1.07 1.22 16 2 O -0.37 -2.96 8.73 -35.23 -0.31 -3.27 16 3 C 0.09 0.61 1.87 -26.73 -0.05 0.56 16 4 H 0.07 0.39 7.62 -51.93 -0.40 -0.01 16 5 C 0.10 0.99 5.10 -4.04 -0.02 0.97 16 6 N -0.74 -7.57 5.41 -60.29 -0.33 -7.89 16 7 C 0.51 7.25 7.82 -10.99 -0.09 7.16 16 8 O -0.52 -10.08 16.02 5.56 0.09 -9.99 16 9 C -0.08 -1.03 5.83 -29.04 -0.17 -1.19 16 10 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 11 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 12 C -0.19 -4.28 9.99 -39.39 -0.39 -4.68 16 13 C 0.16 3.97 6.65 -39.10 -0.26 3.71 16 14 O -0.18 -5.29 9.76 0.06 0.00 -5.29 16 15 C -0.39 -11.22 9.45 30.89 0.29 -10.93 16 16 H 0.09 2.44 5.29 -52.49 -0.28 2.17 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 19 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.23 -5.33 9.13 -39.40 -0.36 -5.69 16 24 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 25 C -0.09 -0.62 2.83 -89.50 -0.25 -0.87 16 26 C -0.12 -0.92 5.28 -25.07 -0.13 -1.06 16 27 C -0.12 -0.84 6.91 -24.74 -0.17 -1.01 16 28 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16 29 C -0.11 -0.69 6.22 -25.61 -0.16 -0.85 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.17 8.00 -51.93 -0.42 -0.24 16 32 H 0.04 0.19 5.77 -51.93 -0.30 -0.11 16 33 H 0.08 0.95 7.36 -51.92 -0.38 0.57 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 2.84 5.88 -40.82 -0.24 2.60 16 36 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.13 2.90 5.71 -52.49 -0.30 2.60 16 42 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.74 7.03 -51.93 -0.37 0.37 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.06 0.39 7.42 -51.93 -0.39 0.00 16 LS Contribution 410.24 15.07 6.18 6.18 Total: -1.00 -35.17 410.24 -8.92 -44.09 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.11 Total: 4.42 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.19 Total: -19.13 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.43 Total: -33.04 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.22 Total: -18.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.17 -8.92 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856158421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.653 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds