Wall clock time and date at job start Wed Apr 1 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00156 * 2 1 4 4 H 1.08993 * 109.46972 * 20.46192 * 3 2 1 5 5 C 1.53000 * 109.47174 * 260.46148 * 3 2 1 6 6 N 1.46500 * 109.47237 * 63.19463 * 5 3 2 7 7 C 1.34774 * 119.99989 * 185.77871 * 6 5 3 8 8 O 1.21278 * 119.99997 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47122 * 179.97438 * 9 7 6 11 11 C 1.38301 * 119.93313 * 269.72334 * 10 9 7 12 12 C 1.38098 * 120.06998 * 179.71962 * 11 10 9 13 13 C 1.38887 * 119.92724 * 0.57953 * 12 11 10 14 14 O 1.35753 * 120.06785 * 179.67229 * 13 12 11 15 15 C 1.34824 * 117.00085 * 185.61452 * 14 13 12 16 16 H 1.07998 * 119.99766 * 5.19697 * 15 14 13 17 17 C 1.38655 * 119.99958 * 185.20049 * 15 14 13 18 18 N 1.31556 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99900 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47188 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47290 * 119.99900 * 19 17 15 22 22 H 1.48498 * 109.47034 * 240.00137 * 19 17 15 23 23 C 1.38878 * 119.86220 * 359.70178 * 13 12 11 24 24 C 1.38093 * 119.93239 * 359.97438 * 23 13 12 25 25 C 1.53002 * 109.46959 * 140.46192 * 3 2 1 26 26 C 1.54270 * 110.03322 * 57.16499 * 25 3 2 27 27 C 1.54881 * 104.19772 * 217.10788 * 26 25 3 28 28 C 1.54889 * 102.74992 * 37.94162 * 27 26 25 29 29 C 1.53875 * 110.03263 * 300.00156 * 25 3 2 30 30 H 1.08999 * 109.47493 * 185.13734 * 1 2 3 31 31 H 1.09003 * 109.46369 * 305.13553 * 1 2 3 32 32 H 1.08997 * 109.47411 * 65.13199 * 1 2 3 33 33 H 1.09008 * 109.47043 * 303.19220 * 5 3 2 34 34 H 1.09003 * 109.46976 * 183.19878 * 5 3 2 35 35 H 0.96998 * 119.99823 * 5.77176 * 6 5 3 36 36 H 1.08998 * 109.47034 * 60.00191 * 9 7 6 37 37 H 1.08998 * 109.47452 * 299.99907 * 9 7 6 38 38 H 1.08004 * 119.96153 * 359.97438 * 11 10 9 39 39 H 1.07992 * 120.03758 * 180.27625 * 12 11 10 40 40 H 0.97004 * 119.99358 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.03328 * 179.97438 * 23 13 12 42 42 H 1.07999 * 119.96717 * 180.02562 * 24 23 13 43 43 H 1.08997 * 110.01881 * 178.60930 * 25 3 2 44 44 H 1.08998 * 110.48604 * 335.78681 * 26 25 3 45 45 H 1.09003 * 110.48308 * 98.42698 * 26 25 3 46 46 H 1.09002 * 110.75337 * 279.62909 * 27 26 25 47 47 H 1.09006 * 110.91973 * 156.33257 * 27 26 25 48 48 H 1.09000 * 110.48608 * 203.37931 * 28 27 26 49 49 H 1.08996 * 110.60043 * 80.79478 * 28 27 26 50 50 H 1.08998 * 110.03096 * 238.57216 * 29 25 3 51 51 H 1.09003 * 110.03025 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2785 2.0289 0.3592 5 6 2.4361 1.6741 -1.4226 6 7 1.2540 1.7358 -2.2857 7 6 1.3971 1.9298 -3.6117 8 8 2.5046 2.0537 -4.0903 9 6 0.1812 1.9927 -4.4996 10 6 0.6120 2.2161 -5.9263 11 6 0.7429 3.5036 -6.4141 12 6 1.1431 3.7117 -7.7193 13 6 1.4025 2.6262 -8.5459 14 8 1.7896 2.8274 -9.8314 15 6 1.9124 1.7349 -10.6119 16 1 1.6255 0.7653 -10.2325 17 6 2.4070 1.8562 -11.9015 18 7 2.7569 3.0373 -12.3634 19 14 2.5777 0.3424 -12.9826 20 1 2.1195 -0.8551 -12.2334 21 1 1.7482 0.5095 -14.2029 22 1 4.0005 0.1695 -13.3711 23 6 1.2645 1.3345 -8.0549 24 6 0.8704 1.1331 -6.7467 25 6 3.2340 1.3188 0.9183 26 6 4.2481 0.2490 0.4631 27 6 4.8314 -0.3085 1.7851 28 6 3.5969 -0.3319 2.7203 29 6 2.8201 0.9494 2.3536 30 1 -0.3634 -1.0235 0.0920 31 1 -0.3632 0.5915 0.8405 32 1 -0.3634 0.4321 -0.9323 33 1 3.1247 0.9194 -1.8028 34 1 2.9306 2.6455 -1.4135 35 1 0.3683 1.6370 -1.9028 36 1 -0.4593 2.8151 -4.1808 37 1 -0.3695 1.0548 -4.4286 38 1 0.5359 4.3473 -5.7722 39 1 1.2495 4.7174 -8.0983 40 1 3.1033 3.1220 -13.2655 41 1 1.4651 0.4884 -8.6954 42 1 0.7633 0.1289 -6.3642 43 1 3.6991 2.3045 0.9058 44 1 3.7449 -0.5407 -0.0948 45 1 5.0350 0.7017 -0.1403 46 1 5.6011 0.3557 2.1781 47 1 5.2271 -1.3141 1.6424 48 1 3.9087 -0.3033 3.7644 49 1 2.9877 -1.2153 2.5293 50 1 3.0850 1.7555 3.0377 51 1 1.7473 0.7611 2.3959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856158421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:47 Heat of formation + Delta-G solvation = -123.677670 kcal Electronic energy + Delta-G solvation = -29818.877250 eV Core-core repulsion = 25682.374653 eV Total energy + Delta-G solvation = -4136.502597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.21422 -40.65297 -39.93381 -38.22138 -37.69123 -35.51778 -34.40429 -33.04448 -31.98331 -31.77019 -29.61084 -28.73851 -27.67125 -27.34306 -26.50234 -23.63825 -23.57330 -22.54241 -21.43461 -21.43210 -20.38991 -19.85200 -18.87162 -18.18311 -17.58924 -17.33983 -16.82666 -16.61198 -16.37355 -16.11660 -15.92447 -15.70920 -15.61414 -15.43952 -15.04910 -14.97881 -14.54908 -14.39820 -14.28084 -14.10137 -14.03120 -13.68237 -13.58526 -13.14672 -12.98640 -12.75277 -12.50681 -12.33490 -12.29849 -12.23772 -12.10376 -11.98230 -11.89034 -11.85043 -11.51383 -11.43611 -11.34278 -11.20664 -10.99052 -10.78444 -10.46438 -10.04908 -9.76700 -8.90357 -8.48186 -6.16109 0.61075 0.66759 1.33339 1.42074 1.52241 1.72718 2.16948 2.22142 2.81258 2.84290 3.17668 3.50982 3.56598 3.76253 3.84546 3.84635 3.95227 4.05023 4.11109 4.17345 4.23091 4.38308 4.47083 4.50255 4.57748 4.58980 4.60186 4.63762 4.69337 4.71146 4.75387 4.80721 4.84528 4.90379 4.94959 5.00141 5.06172 5.08738 5.12279 5.13788 5.27946 5.30174 5.37161 5.45157 5.52001 5.56006 5.56035 5.71557 5.77501 6.02235 6.22600 6.29274 6.57540 6.96493 7.34184 7.78001 8.75621 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.001759 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.662592 B =15913.954274 C =16411.805740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.390 6.390 3 C 0.094 3.906 4 H 0.091 0.909 5 C 0.100 3.900 6 N -0.719 5.719 7 C 0.508 3.492 8 O -0.580 6.580 9 C -0.078 4.078 10 C -0.145 4.145 11 C -0.057 4.057 12 C -0.206 4.206 13 C 0.112 3.888 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.252 1.252 21 H -0.265 1.265 22 H -0.269 1.269 23 C -0.244 4.244 24 C -0.062 4.062 25 C -0.092 4.092 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.120 4.120 29 C -0.109 4.109 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.113 0.887 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -6.182 34.501 35.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.309 6.309 3 C 0.036 3.964 4 H 0.108 0.892 5 C -0.024 4.024 6 N -0.374 5.374 7 C 0.296 3.704 8 O -0.459 6.459 9 C -0.117 4.117 10 C -0.147 4.147 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.061 3.939 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.176 1.176 21 H -0.190 1.190 22 H -0.194 1.194 23 C -0.263 4.263 24 C -0.080 4.080 25 C -0.111 4.111 26 C -0.158 4.158 27 C -0.163 4.163 28 C -0.157 4.157 29 C -0.147 4.147 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.936 -5.965 33.879 34.908 hybrid contribution 0.057 -0.259 -1.078 1.110 sum -5.879 -6.224 32.801 33.900 Atomic orbital electron populations 1.23115 0.79985 1.03954 1.00681 1.87978 1.20774 1.27304 1.94842 1.22360 0.96406 0.85594 0.92028 0.89160 1.21915 0.88573 1.01326 0.90629 1.45998 1.10546 1.74186 1.06697 1.21239 0.91308 0.74966 0.82887 1.90755 1.29348 1.50438 1.75368 1.20541 0.95163 1.07251 0.88754 1.19254 1.07061 0.92574 0.95763 1.20886 0.96110 0.97518 0.93016 1.20448 1.09978 0.96774 0.95342 1.19952 0.93664 0.94982 0.85255 1.83944 1.76942 1.35492 1.17671 1.21847 1.44859 0.87249 0.94953 0.88306 1.26626 0.95442 1.02245 0.97914 1.70198 1.42419 1.25328 1.18016 0.84510 0.78651 0.75625 0.77266 1.17553 1.18993 1.19401 1.21222 1.10794 0.96029 0.98296 1.20931 0.95813 0.99392 0.91844 1.21970 0.94064 1.00205 0.94825 1.22355 0.97598 0.98214 0.97659 1.22488 0.97782 1.00785 0.95208 1.22294 0.96277 0.97988 0.99180 1.22071 1.00428 0.97742 0.94459 0.89003 0.92133 0.93453 0.92887 0.91340 0.75014 0.84887 0.85509 0.83392 0.86882 0.91830 0.86602 0.84605 0.88909 0.92141 0.92519 0.91161 0.92043 0.91159 0.92249 0.90873 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.60 113.37 1.20 1.34 16 2 O -0.39 -5.22 8.73 -148.98 -1.30 -6.52 16 3 C 0.09 1.10 1.87 30.60 0.06 1.16 16 4 H 0.09 0.66 7.62 -2.39 -0.02 0.64 16 5 C 0.10 1.77 5.10 86.38 0.44 2.21 16 6 N -0.72 -12.08 5.41 -463.05 -2.51 -14.59 16 7 C 0.51 12.75 7.82 87.66 0.69 13.44 16 8 O -0.58 -21.77 16.02 -3.02 -0.05 -21.82 16 9 C -0.08 -1.58 5.83 29.10 0.17 -1.41 16 10 C -0.15 -4.75 4.38 -19.83 -0.09 -4.84 16 11 C -0.06 -2.05 9.69 22.25 0.22 -1.84 16 12 C -0.21 -9.43 9.99 22.39 0.22 -9.20 16 13 C 0.11 5.95 6.65 22.58 0.15 6.10 16 14 O -0.23 -14.83 9.76 -22.71 -0.22 -15.05 16 15 C -0.41 -25.19 9.45 67.92 0.64 -24.55 16 16 H 0.10 5.58 5.29 -2.91 -0.02 5.57 16 17 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 18 N -0.92 -58.43 13.67 21.61 0.30 -58.14 16 19 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 20 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 C -0.24 -11.52 9.13 22.39 0.20 -11.32 16 24 C -0.06 -2.31 9.69 22.25 0.22 -2.10 16 25 C -0.09 -1.06 2.83 -10.07 -0.03 -1.09 16 26 C -0.12 -1.82 5.28 31.67 0.17 -1.65 16 27 C -0.13 -1.58 6.91 31.88 0.22 -1.36 16 28 C -0.12 -1.30 6.83 31.67 0.22 -1.09 16 29 C -0.11 -1.03 6.22 31.32 0.19 -0.84 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.23 8.00 -2.39 -0.02 0.21 16 32 H 0.05 0.24 5.77 -2.39 -0.01 0.23 16 33 H 0.05 1.25 7.36 -2.38 -0.02 1.24 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 3.90 5.88 -92.71 -0.55 3.36 16 36 H 0.13 1.73 8.08 -2.39 -0.02 1.71 16 37 H 0.13 1.81 8.08 -2.39 -0.02 1.79 16 38 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 39 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.12 5.56 5.71 -2.91 -0.02 5.55 16 42 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 1.13 7.03 -2.39 -0.02 1.12 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 51 H 0.07 0.60 7.42 -2.39 -0.02 0.59 16 Total: -1.00 -84.66 410.24 3.99 -80.67 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.39 Total: 26.92 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 5.36 Total: -38.05 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.21 Total: -72.72 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.57 Total: -43.38 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -84.66 3.99 -80.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856158421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.008 kcal (2) G-P(sol) polarization free energy of solvation -84.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds