Wall clock time and date at job start Wed Apr 1 2020 05:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47363 * 2 1 4 4 C 1.46492 * 119.99911 * 270.00015 * 3 2 1 5 5 C 1.50697 * 109.47072 * 269.99707 * 4 3 2 6 6 H 1.08001 * 120.00527 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00228 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99817 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47453 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.46886 * 119.99847 * 9 7 5 12 12 H 1.48498 * 109.47340 * 239.99653 * 9 7 5 13 13 C 1.34780 * 119.99570 * 89.99750 * 3 2 1 14 14 O 1.21287 * 119.99531 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00437 * 0.02562 * 13 3 2 16 16 O 1.45194 * 109.47258 * 180.02562 * 15 13 3 17 17 C 1.34221 * 117.00104 * 179.97438 * 16 15 13 18 18 O 1.20821 * 120.00267 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00019 * 180.02562 * 17 16 15 20 20 H 1.08995 * 109.47292 * 60.00056 * 19 17 16 21 21 C 1.53002 * 109.47078 * 299.99988 * 19 17 16 22 22 C 1.52999 * 109.47105 * 180.02562 * 19 17 16 23 23 C 1.50695 * 109.47313 * 184.99600 * 22 19 17 24 24 C 1.38253 * 120.00596 * 265.23416 * 23 22 19 25 25 C 1.38210 * 120.00401 * 180.25469 * 24 23 22 26 26 C 1.38260 * 120.00052 * 359.78440 * 25 24 23 27 27 C 1.38216 * 119.99407 * 359.96186 * 26 25 24 28 28 C 1.38218 * 119.99818 * 84.99738 * 23 22 19 29 29 C 1.50703 * 119.99968 * 0.02562 * 28 23 22 30 30 H 1.08998 * 109.46972 * 59.99956 * 1 2 3 31 31 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47256 * 300.00204 * 1 2 3 33 33 H 1.08996 * 109.47256 * 239.99796 * 2 1 3 34 34 H 1.08998 * 109.46972 * 120.00044 * 2 1 3 35 35 H 1.08998 * 109.47562 * 29.99554 * 4 3 2 36 36 H 1.09008 * 109.47252 * 150.00123 * 4 3 2 37 37 H 0.97005 * 120.00177 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47278 * 59.99603 * 15 13 3 39 39 H 1.09005 * 109.46395 * 299.99489 * 15 13 3 40 40 H 1.09003 * 109.47067 * 59.99956 * 21 19 17 41 41 H 1.08995 * 109.46911 * 180.02562 * 21 19 17 42 42 H 1.09009 * 109.47081 * 300.00023 * 21 19 17 43 43 H 1.09007 * 109.47248 * 64.99845 * 22 19 17 44 44 H 1.09000 * 109.47200 * 304.99904 * 22 19 17 45 45 H 1.08005 * 119.99601 * 0.02562 * 24 23 22 46 46 H 1.07999 * 120.00287 * 179.77050 * 25 24 23 47 47 H 1.07996 * 120.00396 * 179.97438 * 26 25 24 48 48 H 1.08009 * 119.99396 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.47152 * 269.72462 * 29 28 23 50 50 H 1.09001 * 109.46980 * 149.72562 * 29 28 23 51 51 H 1.09004 * 109.47113 * 29.72543 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1264 -3.6175 9 14 5.9139 2.0974 -3.4162 10 1 6.6016 1.2422 -2.4156 11 1 5.9219 1.4188 -4.7371 12 1 6.6212 3.3987 -3.5240 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9923 1.3059 2.4724 16 8 2.3061 2.1957 3.5760 17 6 2.1349 1.7121 4.8163 18 8 1.7355 0.5828 4.9746 19 6 2.4396 2.5781 6.0115 20 1 1.8095 3.4670 5.9862 21 6 3.9113 2.9950 5.9772 22 6 2.1625 1.7922 7.2946 23 6 2.3490 2.6949 8.4868 24 6 3.5611 2.7211 9.1513 25 6 3.7304 3.5452 10.2479 26 6 2.6890 4.3467 10.6777 27 6 1.4790 4.3243 10.0102 28 6 1.3097 3.5004 8.9130 29 6 -0.0100 3.4754 8.1858 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6877 -2.0284 36 1 2.0956 3.1411 -1.1384 37 1 3.6758 3.5175 -4.4431 38 1 2.6227 0.4186 2.5299 39 1 0.9443 1.0115 2.5302 40 1 4.1092 3.5547 5.0630 41 1 4.1318 3.6209 6.8418 42 1 4.5415 2.1059 6.0025 43 1 2.8542 0.9525 7.3630 44 1 1.1385 1.4190 7.2781 45 1 4.3745 2.0949 8.8156 46 1 4.6761 3.5629 10.7692 47 1 2.8212 4.9903 11.5348 48 1 0.6653 4.9501 10.3462 49 1 -0.0024 4.2237 7.3933 50 1 -0.8151 3.6965 8.8865 51 1 -0.1670 2.4879 7.7517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859783962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:04 Heat of formation + Delta-G solvation = -111.953666 kcal Electronic energy + Delta-G solvation = -30216.946768 eV Core-core repulsion = 26080.952562 eV Total energy + Delta-G solvation = -4135.994206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84039 -39.86638 -38.95777 -36.58380 -35.36819 -35.28072 -33.04657 -32.85278 -31.27303 -30.19104 -29.13385 -27.57557 -26.78550 -26.59742 -24.24520 -23.09023 -22.57588 -22.28160 -21.14672 -20.00752 -18.67034 -17.85166 -16.79752 -16.75790 -16.55554 -16.38389 -15.97229 -15.90276 -15.32192 -15.12165 -14.73692 -14.41436 -14.19644 -13.83802 -13.52627 -13.47533 -13.38478 -13.26907 -13.06453 -12.79773 -12.68148 -12.50235 -12.31413 -12.20934 -12.08518 -12.05742 -11.64697 -11.53342 -11.36402 -11.25429 -11.19411 -11.02529 -10.94858 -10.87334 -10.63023 -10.53451 -10.40902 -10.16135 -9.65771 -9.07257 -9.00711 -8.86008 -8.46493 -7.76555 -6.07316 -4.12071 1.03592 1.09921 2.13610 2.46738 3.24032 3.28491 3.36434 3.40682 3.45855 3.84573 4.38474 4.43675 4.46948 4.55969 4.63601 4.65424 4.77946 4.85072 4.86966 4.98483 5.04729 5.13486 5.19795 5.21503 5.27471 5.30955 5.35773 5.37059 5.47508 5.53817 5.57214 5.57658 5.62230 5.71701 5.73717 5.80165 5.96835 5.98106 6.03287 6.17647 6.19905 6.22981 6.37802 6.39329 6.43344 6.73048 6.98364 7.38218 7.46000 7.69244 7.88963 8.18955 8.28452 8.83396 8.98239 9.53012 11.00864 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002044 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.130361 B =13693.764776 C =14560.684660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.326 6.326 17 C 0.465 3.535 18 O -0.512 6.512 19 C -0.074 4.074 20 H 0.110 0.890 21 C -0.149 4.149 22 C -0.068 4.068 23 C -0.080 4.080 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.079 4.079 29 C -0.124 4.124 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.073 0.927 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 -2.775 26.151 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.241 6.241 17 C 0.307 3.693 18 O -0.401 6.401 19 C -0.094 4.094 20 H 0.128 0.872 21 C -0.206 4.206 22 C -0.105 4.105 23 C -0.080 4.080 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.079 4.079 29 C -0.180 4.180 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.223 -2.391 25.953 26.581 hybrid contribution 0.907 -0.360 -0.434 1.068 sum -4.317 -2.751 25.519 26.028 Atomic orbital electron populations 1.22231 0.96538 1.01689 1.02404 1.21505 0.93751 0.83971 1.03016 1.48210 1.63826 1.13394 1.07149 1.19333 0.96492 0.93713 0.77579 1.21462 0.96844 1.31965 1.06329 0.92350 1.24942 0.97940 0.94888 0.96373 1.69941 1.35608 1.33382 1.14354 0.86430 0.84532 0.78085 0.78296 1.19795 1.20953 1.20837 1.19720 0.79717 0.87159 0.84303 1.90717 1.44493 1.17489 1.86744 1.22968 1.02644 0.92696 0.84550 1.86569 1.78326 1.44851 1.14324 1.23785 0.73871 0.86888 0.84710 1.90647 1.42651 1.20051 1.86758 1.20975 1.00879 0.98513 0.88994 0.87163 1.21862 0.92302 1.02386 1.04058 1.20530 1.04171 0.96503 0.89344 1.19617 0.93714 0.97767 0.96951 1.21084 0.96713 0.99164 0.95661 1.21127 0.99022 0.97076 0.97150 1.21133 0.93453 0.99277 0.99920 1.21026 0.97730 0.99204 0.95821 1.19802 0.95800 0.96245 0.96091 1.20932 0.93677 1.03114 1.00290 0.91783 0.91897 0.93150 0.89420 0.91772 0.94629 0.93705 0.92723 0.88735 0.88811 0.90490 0.90765 0.92018 0.89990 0.89483 0.85903 0.86140 0.86229 0.86133 0.90810 0.91486 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -12.37 2.46 -175.07 -0.43 -12.80 16 4 C 0.25 6.37 5.16 -5.20 -0.03 6.35 16 5 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.51 10.69 7.75 -10.98 -0.09 10.61 16 14 O -0.52 -13.32 16.08 -14.11 -0.23 -13.55 16 15 C 0.05 0.79 4.50 36.00 0.16 0.95 16 16 O -0.33 -5.37 9.66 -45.88 -0.44 -5.81 16 17 C 0.46 6.38 7.26 36.01 0.26 6.64 16 18 O -0.51 -7.71 15.67 -18.75 -0.29 -8.00 16 19 C -0.07 -0.77 2.82 -91.77 -0.26 -1.03 16 20 H 0.11 1.06 7.94 -51.93 -0.41 0.65 16 21 C -0.15 -1.47 8.77 37.16 0.33 -1.15 16 22 C -0.07 -0.63 3.67 -27.89 -0.10 -0.73 16 23 C -0.08 -0.70 4.57 -104.63 -0.48 -1.18 16 24 C -0.11 -0.88 8.33 -39.59 -0.33 -1.21 16 25 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 27 C -0.12 -0.93 9.70 -39.58 -0.38 -1.32 16 28 C -0.08 -0.67 5.88 -104.62 -0.62 -1.28 16 29 C -0.12 -0.89 9.41 36.01 0.34 -0.55 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 33 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 34 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 35 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.04 1.31 7.42 -51.92 -0.39 0.92 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.09 1.40 7.40 -51.93 -0.38 1.01 16 39 H 0.09 1.32 7.18 -51.93 -0.37 0.95 16 40 H 0.08 0.88 8.11 -51.93 -0.42 0.45 16 41 H 0.07 0.64 6.50 -51.93 -0.34 0.30 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.08 0.76 8.05 -51.92 -0.42 0.34 16 44 H 0.09 0.81 5.97 -51.93 -0.31 0.50 16 45 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 51 H 0.07 0.53 6.02 -51.93 -0.31 0.21 16 LS Contribution 420.34 15.07 6.33 6.33 Total: -1.00 -34.24 420.34 -9.64 -43.88 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.25 Total: -0.86 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.05 Total: -0.33 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.31 Total: -38.43 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.96 Total: -27.36 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.24 -9.64 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859783962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.073 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds