Wall clock time and date at job start Wed Apr 1 2020 05:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47363 * 2 1 4 4 C 1.46492 * 119.99911 * 270.00015 * 3 2 1 5 5 C 1.50697 * 109.47072 * 269.99707 * 4 3 2 6 6 H 1.08001 * 120.00527 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00228 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99817 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47453 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.46886 * 119.99847 * 9 7 5 12 12 H 1.48498 * 109.47340 * 239.99653 * 9 7 5 13 13 C 1.34780 * 119.99570 * 89.99750 * 3 2 1 14 14 O 1.21287 * 119.99531 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00437 * 0.02562 * 13 3 2 16 16 O 1.45194 * 109.47258 * 180.02562 * 15 13 3 17 17 C 1.34221 * 117.00104 * 179.97438 * 16 15 13 18 18 O 1.20821 * 120.00267 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00019 * 180.02562 * 17 16 15 20 20 H 1.08995 * 109.47292 * 60.00056 * 19 17 16 21 21 C 1.53002 * 109.47078 * 299.99988 * 19 17 16 22 22 C 1.52999 * 109.47105 * 180.02562 * 19 17 16 23 23 C 1.50695 * 109.47313 * 184.99600 * 22 19 17 24 24 C 1.38253 * 120.00596 * 265.23416 * 23 22 19 25 25 C 1.38210 * 120.00401 * 180.25469 * 24 23 22 26 26 C 1.38260 * 120.00052 * 359.78440 * 25 24 23 27 27 C 1.38216 * 119.99407 * 359.96186 * 26 25 24 28 28 C 1.38218 * 119.99818 * 84.99738 * 23 22 19 29 29 C 1.50703 * 119.99968 * 0.02562 * 28 23 22 30 30 H 1.08998 * 109.46972 * 59.99956 * 1 2 3 31 31 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47256 * 300.00204 * 1 2 3 33 33 H 1.08996 * 109.47256 * 239.99796 * 2 1 3 34 34 H 1.08998 * 109.46972 * 120.00044 * 2 1 3 35 35 H 1.08998 * 109.47562 * 29.99554 * 4 3 2 36 36 H 1.09008 * 109.47252 * 150.00123 * 4 3 2 37 37 H 0.97005 * 120.00177 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47278 * 59.99603 * 15 13 3 39 39 H 1.09005 * 109.46395 * 299.99489 * 15 13 3 40 40 H 1.09003 * 109.47067 * 59.99956 * 21 19 17 41 41 H 1.08995 * 109.46911 * 180.02562 * 21 19 17 42 42 H 1.09009 * 109.47081 * 300.00023 * 21 19 17 43 43 H 1.09007 * 109.47248 * 64.99845 * 22 19 17 44 44 H 1.09000 * 109.47200 * 304.99904 * 22 19 17 45 45 H 1.08005 * 119.99601 * 0.02562 * 24 23 22 46 46 H 1.07999 * 120.00287 * 179.77050 * 25 24 23 47 47 H 1.07996 * 120.00396 * 179.97438 * 26 25 24 48 48 H 1.08009 * 119.99396 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.47152 * 269.72462 * 29 28 23 50 50 H 1.09001 * 109.46980 * 149.72562 * 29 28 23 51 51 H 1.09004 * 109.47113 * 29.72543 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1264 -3.6175 9 14 5.9139 2.0974 -3.4162 10 1 6.6016 1.2422 -2.4156 11 1 5.9219 1.4188 -4.7371 12 1 6.6212 3.3987 -3.5240 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9923 1.3059 2.4724 16 8 2.3061 2.1957 3.5760 17 6 2.1349 1.7121 4.8163 18 8 1.7355 0.5828 4.9746 19 6 2.4396 2.5781 6.0115 20 1 1.8095 3.4670 5.9862 21 6 3.9113 2.9950 5.9772 22 6 2.1625 1.7922 7.2946 23 6 2.3490 2.6949 8.4868 24 6 3.5611 2.7211 9.1513 25 6 3.7304 3.5452 10.2479 26 6 2.6890 4.3467 10.6777 27 6 1.4790 4.3243 10.0102 28 6 1.3097 3.5004 8.9130 29 6 -0.0100 3.4754 8.1858 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6877 -2.0284 36 1 2.0956 3.1411 -1.1384 37 1 3.6758 3.5175 -4.4431 38 1 2.6227 0.4186 2.5299 39 1 0.9443 1.0115 2.5302 40 1 4.1092 3.5547 5.0630 41 1 4.1318 3.6209 6.8418 42 1 4.5415 2.1059 6.0025 43 1 2.8542 0.9525 7.3630 44 1 1.1385 1.4190 7.2781 45 1 4.3745 2.0949 8.8156 46 1 4.6761 3.5629 10.7692 47 1 2.8212 4.9903 11.5348 48 1 0.6653 4.9501 10.3462 49 1 -0.0024 4.2237 7.3933 50 1 -0.8151 3.6965 8.8865 51 1 -0.1670 2.4879 7.7517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859783962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:03 Heat of formation + Delta-G solvation = -128.781746 kcal Electronic energy + Delta-G solvation = -30217.676488 eV Core-core repulsion = 26080.952562 eV Total energy + Delta-G solvation = -4136.723927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95383 -40.77731 -40.32897 -37.78289 -36.98877 -36.15704 -34.94465 -33.61959 -32.00511 -31.70747 -30.58607 -28.47314 -28.15495 -27.42767 -25.41228 -24.66899 -24.04174 -22.90672 -21.96640 -20.85419 -20.25030 -18.96570 -18.65491 -18.06450 -17.88783 -17.49984 -17.08610 -16.82859 -16.69183 -16.19279 -16.02766 -15.71027 -15.16093 -14.91027 -14.73539 -14.62649 -14.40274 -14.11263 -13.99666 -13.89048 -13.79046 -13.59377 -13.49271 -13.29281 -13.17820 -13.09990 -13.05709 -12.84122 -12.70173 -12.52099 -12.24413 -12.23475 -12.16148 -12.05753 -11.80011 -11.78456 -11.70005 -11.65343 -11.44708 -10.73531 -10.65869 -9.64882 -9.55221 -9.45133 -8.24112 -6.38411 0.43778 0.52766 1.04791 1.28004 1.36315 1.38864 1.50394 1.61379 2.31226 2.43973 2.87951 3.05961 3.40583 3.47794 3.75731 3.82651 3.86115 3.96383 4.02829 4.03747 4.14020 4.14913 4.26121 4.28409 4.37233 4.43751 4.55068 4.58093 4.70698 4.77827 4.81975 4.87333 4.89865 4.90935 4.93804 4.98810 5.02147 5.04410 5.16059 5.19390 5.24622 5.29163 5.35336 5.38993 5.53704 5.63595 5.67522 5.79005 5.79661 6.03388 6.17551 6.51998 6.64567 6.71093 7.20638 7.35939 8.83508 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002044 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.130361 B =13693.764776 C =14560.684660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.061 3.939 16 O -0.347 6.347 17 C 0.467 3.533 18 O -0.523 6.523 19 C -0.069 4.069 20 H 0.118 0.882 21 C -0.144 4.144 22 C -0.059 4.059 23 C -0.092 4.092 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.091 4.091 29 C -0.124 4.124 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.030 0.970 36 H -0.001 1.001 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.132 0.868 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -4.248 28.001 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.457 6.457 15 C -0.016 4.016 16 O -0.263 6.263 17 C 0.311 3.689 18 O -0.412 6.412 19 C -0.088 4.088 20 H 0.136 0.864 21 C -0.202 4.202 22 C -0.096 4.096 23 C -0.092 4.092 24 C -0.135 4.135 25 C -0.151 4.151 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.091 4.091 29 C -0.180 4.180 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.048 0.952 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.150 0.850 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.153 0.847 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.874 -3.920 27.821 28.515 hybrid contribution 0.744 0.108 -0.953 1.214 sum -4.130 -3.812 26.868 27.450 Atomic orbital electron populations 1.22173 0.94304 1.03787 1.01841 1.21862 0.95575 0.80995 1.04375 1.48208 1.63601 1.15245 1.05696 1.18792 0.95606 0.91664 0.79777 1.21722 0.97792 1.32063 1.06582 0.92767 1.25860 1.02423 0.94472 0.96438 1.70052 1.37672 1.34114 1.14838 0.85359 0.78976 0.78009 0.78404 1.19133 1.19379 1.20783 1.20563 0.78327 0.86660 0.85854 1.90680 1.47115 1.20151 1.87757 1.22820 1.04646 0.92068 0.82060 1.86584 1.78871 1.45571 1.15268 1.24370 0.73140 0.87106 0.84299 1.90634 1.43268 1.20655 1.86685 1.21077 1.01274 0.98407 0.88035 0.86412 1.21829 0.92029 1.02585 1.03709 1.20436 1.03990 0.96376 0.88825 1.19618 0.94291 0.98239 0.97078 1.21273 0.96796 0.99486 0.95925 1.21404 0.99895 0.96784 0.97054 1.21442 0.93239 0.99269 1.00336 1.21284 0.98492 0.99305 0.95700 1.20007 0.96165 0.96427 0.96532 1.20948 0.93652 1.02926 1.00492 0.93689 0.88384 0.92416 0.90008 0.88452 0.95236 0.98242 0.92356 0.86609 0.86082 0.92322 0.89358 0.91535 0.90054 0.89705 0.85011 0.84443 0.84383 0.84719 0.90820 0.90374 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.23 16 2 C 0.09 2.81 5.93 86.38 0.51 3.32 16 3 N -0.60 -25.18 2.46 -826.17 -2.03 -27.21 16 4 C 0.26 14.10 5.16 85.63 0.44 14.54 16 5 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 9 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.50 21.35 7.75 87.66 0.68 22.03 16 14 O -0.58 -30.95 16.08 15.75 0.25 -30.70 16 15 C 0.06 1.89 4.50 71.24 0.32 2.21 16 16 O -0.35 -11.25 9.66 -44.98 -0.43 -11.69 16 17 C 0.47 12.30 7.26 71.24 0.52 12.82 16 18 O -0.52 -14.80 15.67 21.98 0.34 -14.45 16 19 C -0.07 -1.37 2.82 -11.54 -0.03 -1.40 16 20 H 0.12 2.18 7.94 -2.39 -0.02 2.16 16 21 C -0.14 -2.75 8.77 71.98 0.63 -2.12 16 22 C -0.06 -1.02 3.67 29.85 0.11 -0.91 16 23 C -0.09 -1.49 4.57 -19.87 -0.09 -1.58 16 24 C -0.12 -1.72 8.33 22.27 0.19 -1.53 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 27 C -0.13 -1.81 9.70 22.27 0.22 -1.60 16 28 C -0.09 -1.42 5.88 -19.87 -0.12 -1.54 16 29 C -0.12 -1.64 9.41 71.24 0.67 -0.97 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 33 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 34 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 35 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 36 H 0.00 -0.03 7.42 -2.38 -0.02 -0.05 16 37 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 38 H 0.12 3.13 7.40 -2.39 -0.02 3.11 16 39 H 0.12 3.11 7.18 -2.38 -0.02 3.10 16 40 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 41 H 0.09 1.42 6.50 -2.39 -0.02 1.41 16 42 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.08 1.39 8.05 -2.38 -0.02 1.37 16 44 H 0.08 1.49 5.97 -2.39 -0.01 1.48 16 45 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 46 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 47 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 48 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 51 H 0.07 0.94 6.02 -2.38 -0.01 0.93 16 Total: -1.00 -76.60 420.34 7.29 -69.31 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.91 Total: 16.44 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.93 Total: 7.00 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.74 Total: -82.86 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: 0.16 Total: -56.84 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -76.60 7.29 -69.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859783962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.471 kcal (2) G-P(sol) polarization free energy of solvation -76.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds