Wall clock time and date at job start Wed Apr 1 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99982 * 2 1 4 4 C 1.53001 * 109.47455 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47261 * 64.99847 * 4 3 2 6 6 C 1.47853 * 110.99802 * 55.41343 * 5 4 3 7 7 C 1.54908 * 104.79501 * 146.36373 * 6 5 4 8 8 C 1.55147 * 101.65370 * 322.93358 * 7 6 5 9 9 C 1.47436 * 111.00345 * 176.25839 * 5 4 3 10 10 H 1.09000 * 109.89372 * 117.17287 * 9 5 4 11 11 C 1.53008 * 109.88773 * 356.14777 * 9 5 4 12 12 O 1.45196 * 109.46994 * 182.73389 * 11 9 5 13 13 C 1.34227 * 116.99587 * 179.97438 * 12 11 9 14 14 O 1.20823 * 120.00358 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.99889 * 180.02562 * 13 12 11 16 16 C 1.50701 * 109.47135 * 180.02562 * 15 13 12 17 17 C 1.37639 * 120.12582 * 264.99831 * 16 15 13 18 18 C 1.38617 * 120.24639 * 180.23182 * 17 16 15 19 19 C 1.38659 * 120.49712 * 359.48738 * 18 17 16 20 20 C 1.37592 * 120.25141 * 0.51583 * 19 18 17 21 21 C 1.40695 * 120.12692 * 84.97539 * 16 15 13 22 22 C 1.41391 * 120.24480 * 0.04796 * 21 16 15 23 23 H 1.07997 * 120.00319 * 334.64471 * 22 21 16 24 24 C 1.39946 * 120.00375 * 154.64808 * 22 21 16 25 25 N 1.30824 * 120.00030 * 343.16288 * 24 22 21 26 26 Si 1.86800 * 120.00159 * 163.16415 * 24 22 21 27 27 H 1.48494 * 109.47038 * 94.75636 * 26 24 22 28 28 H 1.48503 * 109.47029 * 214.75594 * 26 24 22 29 29 H 1.48497 * 109.47226 * 334.75233 * 26 24 22 30 30 H 1.09004 * 109.46871 * 299.99506 * 1 2 3 31 31 H 1.08992 * 109.47731 * 59.99833 * 1 2 3 32 32 H 1.08997 * 109.46845 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47454 * 60.00496 * 3 2 1 34 34 H 1.09007 * 109.47457 * 300.00497 * 3 2 1 35 35 H 1.09003 * 109.46955 * 305.00364 * 4 3 2 36 36 H 1.08999 * 109.47200 * 185.00302 * 4 3 2 37 37 H 1.09001 * 110.37095 * 265.19168 * 6 5 4 38 38 H 1.08992 * 110.36988 * 27.53204 * 6 5 4 39 39 H 1.09006 * 110.98770 * 81.01892 * 7 6 5 40 40 H 1.08994 * 110.99250 * 204.79928 * 7 6 5 41 41 H 1.08999 * 110.70277 * 277.26941 * 8 7 6 42 42 H 1.08998 * 110.70168 * 154.03781 * 8 7 6 43 43 H 1.09003 * 109.46996 * 62.73277 * 11 9 5 44 44 H 1.09004 * 109.46922 * 302.73849 * 11 9 5 45 45 H 1.08999 * 109.46873 * 59.99940 * 15 13 12 46 46 H 1.09001 * 109.46770 * 300.00013 * 15 13 12 47 47 H 1.07995 * 119.87677 * 359.95510 * 17 16 15 48 48 H 1.07995 * 119.74826 * 179.74292 * 18 17 16 49 49 H 1.08001 * 119.87447 * 180.25105 * 19 18 17 50 50 H 1.07998 * 120.12863 * 179.76382 * 20 19 18 51 51 H 0.97001 * 120.00226 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 3.4720 1.3136 -2.4255 7 6 4.5849 1.1765 -3.4942 8 6 5.8666 1.2451 -2.6226 9 6 5.4485 0.5109 -1.3313 10 1 5.7817 -0.5263 -1.3671 11 6 6.0568 1.2109 -0.1143 12 8 7.5042 1.2114 -0.2296 13 6 8.1944 1.7923 0.7643 14 8 7.6086 2.2837 1.6998 15 6 9.7001 1.8316 0.7133 16 6 10.2261 2.5328 1.9391 17 6 10.5179 3.8771 1.8942 18 6 11.0064 4.5236 3.0189 19 6 11.1967 3.8281 4.2033 20 6 10.9118 2.4837 4.2711 21 6 10.4203 1.8158 3.1340 22 6 10.1245 0.4344 3.1918 23 1 9.3983 0.0089 2.5151 24 6 10.7726 -0.3816 4.1260 25 7 11.8656 0.0352 4.7117 26 14 10.0771 -2.0659 4.5365 27 1 10.7431 -3.0944 3.6975 28 1 10.3186 -2.3650 5.9709 29 1 8.6167 -2.0774 4.2676 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.8515 0.5682 0.8409 36 1 3.9785 2.1766 0.0890 37 1 2.5427 0.8731 -2.7867 38 1 3.3209 2.3616 -2.1671 39 1 4.5147 0.2190 -4.0105 40 1 4.5494 2.0036 -4.2032 41 1 6.1320 2.2804 -2.4086 42 1 6.6924 0.7273 -3.1103 43 1 5.7647 0.6819 0.7929 44 1 5.6956 2.2383 -0.0680 45 1 10.0194 2.3701 -0.1789 46 1 10.0892 0.8139 0.6822 47 1 10.3700 4.4294 0.9780 48 1 11.2366 5.5777 2.9735 49 1 11.5740 4.3427 5.0746 50 1 11.0643 1.9431 5.1936 51 1 12.3147 -0.5302 5.3595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861036215.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:00 Heat of formation + Delta-G solvation = -105.337249 kcal Electronic energy + Delta-G solvation = -30826.495617 eV Core-core repulsion = 26690.788320 eV Total energy + Delta-G solvation = -4135.707297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35429 -39.41167 -37.82084 -37.53531 -35.74153 -33.66937 -32.98896 -31.92258 -30.83760 -29.50758 -28.62585 -27.21850 -26.33130 -25.41377 -24.82822 -23.31025 -21.42078 -21.05928 -20.92098 -19.54504 -19.33711 -17.32578 -17.21434 -16.80510 -16.56454 -16.42399 -15.96375 -15.46429 -15.39488 -15.03850 -14.91158 -14.48686 -14.30757 -13.95106 -13.66087 -13.48594 -13.18900 -12.85239 -12.70068 -12.61523 -12.53816 -12.04872 -11.82476 -11.75848 -11.59439 -11.45807 -11.30177 -11.24542 -11.15056 -11.12261 -11.00949 -10.95434 -10.81072 -10.75615 -10.42098 -10.21180 -9.85582 -9.76200 -9.53439 -9.42763 -9.17993 -8.47216 -7.38153 -7.35900 -6.78119 -4.39274 2.66308 2.85507 2.94941 3.07064 3.12665 3.24078 3.25803 3.56631 3.81432 3.92564 4.39650 4.49032 4.60017 4.63449 4.81700 4.89462 4.96092 5.00830 5.09580 5.12100 5.16991 5.23647 5.33069 5.34455 5.43011 5.45235 5.56909 5.67525 5.68413 5.72755 5.75837 5.83302 5.93972 5.95731 6.03258 6.18969 6.24364 6.39414 6.46937 6.70449 6.74986 6.76681 6.95836 7.01101 7.04601 7.24948 7.37141 7.59577 7.86730 8.01110 8.08551 8.26141 8.46216 8.60666 8.86458 8.95931 10.15729 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.002718 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.526331 B =10297.955275 C =11354.543733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.064 3.936 4 C 0.036 3.964 5 N -0.505 5.505 6 C 0.039 3.961 7 C -0.130 4.130 8 C -0.131 4.131 9 C 0.074 3.926 10 H 0.100 0.900 11 C 0.050 3.950 12 O -0.364 6.364 13 C 0.458 3.542 14 O -0.493 6.493 15 C -0.040 4.040 16 C -0.196 4.196 17 C -0.076 4.076 18 C -0.242 4.242 19 C -0.104 4.104 20 C -0.159 4.159 21 C 0.130 3.870 22 C -0.457 4.457 23 H 0.074 0.926 24 C 0.078 3.922 25 N -0.791 5.791 26 Si 0.902 3.098 27 H -0.269 1.269 28 H -0.274 1.274 29 H -0.260 1.260 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.118 0.882 51 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.701 0.542 -12.757 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.013 4.013 4 C -0.092 4.092 5 N -0.230 5.230 6 C -0.088 4.088 7 C -0.168 4.168 8 C -0.170 4.170 9 C -0.034 4.034 10 H 0.118 0.882 11 C -0.025 4.025 12 O -0.281 6.281 13 C 0.301 3.699 14 O -0.378 6.378 15 C -0.078 4.078 16 C -0.198 4.198 17 C -0.094 4.094 18 C -0.261 4.261 19 C -0.122 4.122 20 C -0.179 4.179 21 C 0.128 3.872 22 C -0.486 4.486 23 H 0.092 0.908 24 C -0.140 4.140 25 N -0.416 5.416 26 Si 0.727 3.273 27 H -0.194 1.194 28 H -0.199 1.199 29 H -0.184 1.184 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.126 0.874 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.136 0.864 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.813 -0.065 -12.286 20.026 hybrid contribution -0.314 0.421 0.535 0.750 sum -16.128 0.356 -11.751 19.958 Atomic orbital electron populations 1.22726 0.81711 1.02655 0.99563 1.88024 1.18873 1.27083 1.95238 1.22627 0.93295 0.85334 1.00091 1.22500 0.93629 0.98981 0.94063 1.63953 1.07065 1.50264 1.01738 1.23121 0.98848 0.96179 0.90692 1.22727 0.94288 1.02516 0.97315 1.22790 0.98123 1.01011 0.95053 1.22451 0.86731 1.00930 0.93302 0.88232 1.23566 0.78727 1.00876 0.99376 1.86509 1.19946 1.73375 1.48304 1.24523 0.92057 0.74137 0.79203 1.90635 1.71192 1.42567 1.33421 1.19981 0.85189 1.03955 0.98656 1.19044 1.12928 0.94057 0.93747 1.20313 0.98996 0.93578 0.96561 1.20310 1.13096 0.97888 0.94798 1.20697 1.00302 0.95027 0.96181 1.21308 1.04841 0.92692 0.99023 1.17348 0.87780 0.92641 0.89443 1.19493 1.20526 0.92799 1.15777 0.90786 1.25891 0.93400 1.00491 0.94225 1.69817 1.12810 1.37725 1.21245 0.86383 0.80841 0.81572 0.78548 1.19401 1.19939 1.18407 0.94370 0.94421 0.89701 0.92837 0.93260 0.88973 0.92351 0.90038 0.93729 0.90470 0.90824 0.91231 0.89967 0.90812 0.91724 0.89432 0.87426 0.89615 0.89537 0.89464 0.86400 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.24 10.65 -35.23 -0.38 -4.61 16 3 C 0.06 0.62 5.87 37.16 0.22 0.84 16 4 C 0.04 0.40 4.15 -3.83 -0.02 0.39 16 5 N -0.50 -5.75 5.22 -223.34 -1.17 -6.92 16 6 C 0.04 0.36 5.26 -2.29 -0.01 0.35 16 7 C -0.13 -1.10 7.08 -24.59 -0.17 -1.28 16 8 C -0.13 -1.35 6.14 -24.90 -0.15 -1.50 16 9 C 0.07 0.89 3.77 -66.72 -0.25 0.64 16 10 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 11 C 0.05 0.73 3.53 37.16 0.13 0.86 16 12 O -0.36 -6.18 9.87 -39.25 -0.39 -6.57 16 13 C 0.46 9.25 7.59 36.01 0.27 9.52 16 14 O -0.49 -11.57 15.78 -18.75 -0.30 -11.86 16 15 C -0.04 -0.81 5.29 -29.03 -0.15 -0.96 16 16 C -0.20 -4.69 4.43 -103.91 -0.46 -5.15 16 17 C -0.08 -1.74 9.66 -39.66 -0.38 -2.12 16 18 C -0.24 -5.55 10.05 -39.29 -0.39 -5.95 16 19 C -0.10 -2.50 10.02 -39.66 -0.40 -2.89 16 20 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 21 C 0.13 3.46 5.57 -106.83 -0.59 2.87 16 22 C -0.46 -11.97 8.16 -37.74 -0.31 -12.28 16 23 H 0.07 1.90 6.66 -52.49 -0.35 1.55 16 24 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 25 N -0.79 -20.25 10.96 55.55 0.61 -19.64 16 26 Si 0.90 18.87 29.59 -169.99 -5.03 13.84 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 28 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 29 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.42 6.63 -51.92 -0.34 0.07 16 35 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 36 H 0.06 0.64 6.20 -51.93 -0.32 0.32 16 37 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 38 H 0.04 0.39 7.43 -51.93 -0.39 0.00 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.75 7.85 -51.93 -0.41 0.35 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.16 6.85 -51.93 -0.36 0.80 16 44 H 0.06 0.93 6.48 -51.93 -0.34 0.59 16 45 H 0.09 1.46 8.05 -51.93 -0.42 1.05 16 46 H 0.11 2.13 7.05 -51.93 -0.37 1.76 16 47 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 48 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 49 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 50 H 0.12 3.20 6.19 -52.49 -0.32 2.88 16 51 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 406.91 15.07 6.13 6.13 Total: -1.00 -30.26 406.91 -10.68 -40.94 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.18 Total: 6.71 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.99 Total: -18.03 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: -0.56 Total: -26.56 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -1.06 Total: -23.04 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.26 -10.68 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861036215.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.397 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds