Wall clock time and date at job start Wed Apr 1 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99819 * 2 1 4 4 C 1.53005 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46857 * 180.02562 * 4 3 2 6 6 C 1.53354 * 109.41960 * 295.12435 * 5 4 3 7 7 C 1.53192 * 109.15078 * 178.68060 * 6 5 4 8 8 N 1.46921 * 108.89286 * 54.57393 * 7 6 5 9 9 C 1.34776 * 120.62899 * 126.30260 * 8 7 6 10 10 O 1.21282 * 120.00097 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00591 * 180.02562 * 9 8 7 12 12 C 1.50693 * 109.47725 * 179.97438 * 11 9 8 13 13 C 1.38303 * 119.93320 * 269.73016 * 12 11 9 14 14 C 1.38100 * 120.06951 * 179.72169 * 13 12 11 15 15 C 1.38877 * 119.92978 * 0.57401 * 14 13 12 16 16 O 1.35749 * 120.06727 * 179.68405 * 15 14 13 17 17 C 1.34836 * 116.99888 * 174.48117 * 16 15 14 18 18 H 1.07998 * 120.00183 * 5.05549 * 17 16 15 19 19 C 1.38653 * 120.00185 * 185.05427 * 17 16 15 20 20 N 1.31558 * 119.99802 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00289 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47267 * 119.99635 * 21 19 17 24 24 H 1.48494 * 109.47365 * 240.00066 * 21 19 17 25 25 C 1.38878 * 119.86254 * 359.69635 * 15 14 13 26 26 C 1.38103 * 119.93154 * 0.02562 * 25 15 14 27 27 C 1.46921 * 118.74474 * 306.32172 * 8 7 6 28 28 C 1.53044 * 109.45731 * 174.99819 * 5 4 3 29 29 H 1.08998 * 109.47524 * 300.00428 * 1 2 3 30 30 H 1.08999 * 109.46660 * 60.00531 * 1 2 3 31 31 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47306 * 59.99627 * 3 2 1 33 33 H 1.09004 * 109.47408 * 299.99840 * 3 2 1 34 34 H 1.09000 * 109.47224 * 59.99723 * 4 3 2 35 35 H 1.08996 * 109.46640 * 299.99698 * 4 3 2 36 36 H 1.08996 * 109.46547 * 55.02753 * 5 4 3 37 37 H 1.09001 * 109.68417 * 58.71194 * 6 5 4 38 38 H 1.09005 * 109.47206 * 298.51564 * 6 5 4 39 39 H 1.09000 * 109.58304 * 294.72167 * 7 6 5 40 40 H 1.09000 * 109.58900 * 174.43852 * 7 6 5 41 41 H 1.09005 * 109.46719 * 300.00456 * 11 9 8 42 42 H 1.09000 * 109.46987 * 59.99278 * 11 9 8 43 43 H 1.08003 * 119.96304 * 359.97061 * 13 12 11 44 44 H 1.08003 * 120.03257 * 180.26565 * 14 13 12 45 45 H 0.96993 * 120.00054 * 180.02562 * 20 19 17 46 46 H 1.08004 * 120.03362 * 179.97438 * 25 15 14 47 47 H 1.07999 * 119.96370 * 179.97438 * 26 25 15 48 48 H 1.09000 * 109.59377 * 173.39414 * 27 8 7 49 49 H 1.09002 * 109.58813 * 293.68275 * 27 8 7 50 50 H 1.09005 * 109.49764 * 61.43724 * 28 5 4 51 51 H 1.09000 * 109.52438 * 301.35254 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 6 3.8046 3.2983 -1.3081 7 6 4.4026 4.7085 -1.2870 8 7 5.8442 4.6101 -1.0208 9 6 6.7362 5.1914 -1.8471 10 8 6.3516 5.8034 -2.8210 11 6 8.2117 5.0810 -1.5610 12 6 8.9863 5.8114 -2.6275 13 6 9.3970 5.1396 -3.7645 14 6 10.1020 5.8076 -4.7463 15 6 10.4089 7.1524 -4.5855 16 8 11.1074 7.8102 -5.5458 17 6 11.2726 9.1382 -5.3814 18 1 10.9288 9.6172 -4.4765 19 6 11.8838 9.8890 -6.3739 20 7 12.3030 9.3055 -7.4760 21 14 12.1133 11.7287 -6.1458 22 1 11.5612 12.1369 -4.8290 23 1 13.5605 12.0574 -6.1985 24 1 11.4011 12.4544 -7.2280 25 6 10.0000 7.8229 -3.4401 26 6 9.2903 7.1507 -2.4645 27 6 6.2949 3.8655 0.1628 28 6 5.6783 2.4635 0.1277 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8567 0.6440 0.8909 36 1 3.7669 3.1536 0.8434 37 1 2.7214 3.3639 -1.4102 38 1 4.2167 2.7410 -2.1495 39 1 3.9256 5.2959 -0.5024 40 1 4.2411 5.1885 -2.2522 41 1 8.4272 5.5227 -0.5881 42 1 8.5032 4.0307 -1.5557 43 1 9.1625 4.0924 -3.8866 44 1 10.4187 5.2834 -5.6359 45 1 12.7309 9.8307 -8.1702 46 1 10.2376 8.8687 -3.3120 47 1 8.9724 7.6715 -1.5734 48 1 7.3820 3.7868 0.1530 49 1 5.9743 4.3854 1.0656 50 1 6.0726 1.9140 -0.7271 51 1 5.9270 1.9335 1.0472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862430532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:22 Heat of formation + Delta-G solvation = -96.666427 kcal Electronic energy + Delta-G solvation = -29592.239104 eV Core-core repulsion = 25456.907803 eV Total energy + Delta-G solvation = -4135.331302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39499 -39.03367 -38.55014 -37.61485 -36.38248 -34.48781 -32.50239 -31.87823 -31.01897 -30.20921 -30.07388 -27.23141 -26.53963 -25.23792 -24.94584 -23.44040 -22.39536 -21.91422 -21.06273 -20.35094 -19.00458 -17.92585 -17.24819 -16.92411 -16.69589 -16.49404 -15.94995 -15.60844 -15.44451 -14.89619 -14.64150 -14.52562 -14.24331 -14.08475 -13.86111 -13.78682 -13.57989 -13.49269 -13.17960 -13.11088 -12.66540 -12.61689 -12.42314 -12.22709 -11.83322 -11.75860 -11.70388 -11.59835 -11.45945 -11.25113 -11.21137 -10.86480 -10.80842 -10.73107 -10.63819 -10.54623 -10.38019 -10.09563 -9.60553 -9.26774 -8.77441 -8.74123 -8.09065 -7.10385 -6.39909 -3.98348 2.30302 2.31597 2.77873 2.97707 3.15985 3.17585 3.22836 3.27187 4.01213 4.27229 4.27879 4.42127 4.55221 4.66601 4.71383 4.75101 4.85257 4.90358 4.92674 4.98296 5.01825 5.07575 5.13547 5.17641 5.20396 5.27277 5.31474 5.33453 5.37056 5.41459 5.45862 5.52113 5.63938 5.67233 5.69624 5.75601 5.78309 5.81569 5.90539 6.02298 6.27343 6.42847 6.47696 6.69535 6.76110 6.97317 7.11267 7.29586 7.37015 7.43035 7.50727 7.89894 8.05665 8.32436 9.06030 9.77053 10.78420 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.001611 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.864932 B =17376.815213 C =17432.686957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.084 4.084 6 C -0.132 4.132 7 C 0.111 3.889 8 N -0.622 5.622 9 C 0.512 3.488 10 O -0.520 6.520 11 C -0.078 4.078 12 C -0.170 4.170 13 C -0.060 4.060 14 C -0.191 4.191 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.232 4.232 26 C -0.056 4.056 27 C 0.108 3.892 28 C -0.130 4.130 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.018 -15.873 19.829 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.018 4.018 4 C -0.151 4.151 5 C -0.103 4.103 6 C -0.170 4.170 7 C -0.012 4.012 8 N -0.358 5.358 9 C 0.301 3.699 10 O -0.394 6.394 11 C -0.118 4.118 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.210 4.210 15 C 0.103 3.897 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.251 4.251 26 C -0.075 4.075 27 C -0.016 4.016 28 C -0.168 4.168 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 48 H 0.107 0.893 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.870 -15.681 18.848 30.939 hybrid contribution -0.279 1.129 0.235 1.187 sum -19.149 -14.552 19.083 30.702 Atomic orbital electron populations 1.22742 0.80978 1.02791 1.00009 1.87870 1.19765 1.28286 1.95436 1.22649 0.94330 0.84550 1.00279 1.21556 0.92859 0.97155 1.03497 1.21138 0.95493 0.95335 0.98286 1.22118 1.00783 0.96264 0.97865 1.21508 0.80308 0.96474 1.02905 1.48200 1.06323 1.54583 1.26729 1.21069 0.88684 0.78059 0.82106 1.90735 1.80484 1.40553 1.27645 1.20434 0.90168 1.01740 0.99456 1.18656 1.06537 0.94645 0.97287 1.20392 0.96581 0.98130 0.92699 1.20153 1.06797 0.92997 1.01088 1.19377 0.89751 0.91931 0.88662 1.83978 1.61200 1.22309 1.40796 1.21378 1.40303 0.80175 1.04787 0.89047 1.25280 0.96430 1.00278 0.94567 1.70050 1.36957 1.36308 1.06563 0.85650 0.78321 0.80763 0.78705 1.19124 1.20190 1.20170 1.21105 1.06979 1.01153 0.95895 1.20499 0.96283 0.93133 0.97568 1.21717 1.00263 0.91628 0.87943 1.21965 0.94855 0.96951 1.03007 0.94106 0.94012 0.89623 0.93405 0.92984 0.90938 0.90974 0.90795 0.90826 0.91183 0.91961 0.88938 0.89117 0.89065 0.87446 0.86558 0.92144 0.85599 0.87883 0.89272 0.91463 0.91074 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.26 10.70 -35.23 -0.38 -3.64 16 3 C 0.06 0.37 5.70 37.16 0.21 0.58 16 4 C -0.11 -0.69 5.05 -26.73 -0.14 -0.82 16 5 C -0.08 -0.48 2.15 -90.42 -0.19 -0.68 16 6 C -0.13 -0.95 5.16 -26.45 -0.14 -1.09 16 7 C 0.11 1.05 6.42 -3.71 -0.02 1.02 16 8 N -0.62 -6.48 2.97 -172.77 -0.51 -6.99 16 9 C 0.51 7.34 7.69 -10.98 -0.08 7.26 16 10 O -0.52 -10.06 15.45 5.56 0.09 -9.97 16 11 C -0.08 -1.01 4.17 -29.04 -0.12 -1.13 16 12 C -0.17 -3.04 4.38 -104.58 -0.46 -3.49 16 13 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 14 C -0.19 -4.27 9.99 -39.40 -0.39 -4.66 16 15 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 16 O -0.18 -5.30 9.76 0.03 0.00 -5.30 16 17 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 18 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 21 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 25 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 27 C 0.11 0.73 6.34 -3.71 -0.02 0.71 16 28 C -0.13 -0.74 5.36 -26.61 -0.14 -0.88 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.31 6.54 -51.93 -0.34 -0.03 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.45 6.52 -51.93 -0.34 0.11 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 41 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 42 H 0.09 0.95 7.63 -51.93 -0.40 0.55 16 43 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 44 H 0.12 2.50 8.06 -52.48 -0.42 2.07 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.13 2.87 5.64 -52.48 -0.30 2.58 16 47 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 48 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -35.47 409.58 -8.68 -44.14 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.20 Total: 1.52 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.58 Total: -16.83 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.24 Total: -32.11 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.29 Total: -18.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.47 -8.68 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862430532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.522 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds