Wall clock time and date at job start Wed Apr 1 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99819 * 2 1 4 4 C 1.53005 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46857 * 180.02562 * 4 3 2 6 6 C 1.53354 * 109.41960 * 295.12435 * 5 4 3 7 7 C 1.53192 * 109.15078 * 178.68060 * 6 5 4 8 8 N 1.46921 * 108.89286 * 54.57393 * 7 6 5 9 9 C 1.34776 * 120.62899 * 126.30260 * 8 7 6 10 10 O 1.21282 * 120.00097 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00591 * 180.02562 * 9 8 7 12 12 C 1.50693 * 109.47725 * 179.97438 * 11 9 8 13 13 C 1.38303 * 119.93320 * 269.73016 * 12 11 9 14 14 C 1.38100 * 120.06951 * 179.72169 * 13 12 11 15 15 C 1.38877 * 119.92978 * 0.57401 * 14 13 12 16 16 O 1.35749 * 120.06727 * 179.68405 * 15 14 13 17 17 C 1.34836 * 116.99888 * 174.48117 * 16 15 14 18 18 H 1.07998 * 120.00183 * 5.05549 * 17 16 15 19 19 C 1.38653 * 120.00185 * 185.05427 * 17 16 15 20 20 N 1.31558 * 119.99802 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00289 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47267 * 119.99635 * 21 19 17 24 24 H 1.48494 * 109.47365 * 240.00066 * 21 19 17 25 25 C 1.38878 * 119.86254 * 359.69635 * 15 14 13 26 26 C 1.38103 * 119.93154 * 0.02562 * 25 15 14 27 27 C 1.46921 * 118.74474 * 306.32172 * 8 7 6 28 28 C 1.53044 * 109.45731 * 174.99819 * 5 4 3 29 29 H 1.08998 * 109.47524 * 300.00428 * 1 2 3 30 30 H 1.08999 * 109.46660 * 60.00531 * 1 2 3 31 31 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47306 * 59.99627 * 3 2 1 33 33 H 1.09004 * 109.47408 * 299.99840 * 3 2 1 34 34 H 1.09000 * 109.47224 * 59.99723 * 4 3 2 35 35 H 1.08996 * 109.46640 * 299.99698 * 4 3 2 36 36 H 1.08996 * 109.46547 * 55.02753 * 5 4 3 37 37 H 1.09001 * 109.68417 * 58.71194 * 6 5 4 38 38 H 1.09005 * 109.47206 * 298.51564 * 6 5 4 39 39 H 1.09000 * 109.58304 * 294.72167 * 7 6 5 40 40 H 1.09000 * 109.58900 * 174.43852 * 7 6 5 41 41 H 1.09005 * 109.46719 * 300.00456 * 11 9 8 42 42 H 1.09000 * 109.46987 * 59.99278 * 11 9 8 43 43 H 1.08003 * 119.96304 * 359.97061 * 13 12 11 44 44 H 1.08003 * 120.03257 * 180.26565 * 14 13 12 45 45 H 0.96993 * 120.00054 * 180.02562 * 20 19 17 46 46 H 1.08004 * 120.03362 * 179.97438 * 25 15 14 47 47 H 1.07999 * 119.96370 * 179.97438 * 26 25 15 48 48 H 1.09000 * 109.59377 * 173.39414 * 27 8 7 49 49 H 1.09002 * 109.58813 * 293.68275 * 27 8 7 50 50 H 1.09005 * 109.49764 * 61.43724 * 28 5 4 51 51 H 1.09000 * 109.52438 * 301.35254 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 6 3.8046 3.2983 -1.3081 7 6 4.4026 4.7085 -1.2870 8 7 5.8442 4.6101 -1.0208 9 6 6.7362 5.1914 -1.8471 10 8 6.3516 5.8034 -2.8210 11 6 8.2117 5.0810 -1.5610 12 6 8.9863 5.8114 -2.6275 13 6 9.3970 5.1396 -3.7645 14 6 10.1020 5.8076 -4.7463 15 6 10.4089 7.1524 -4.5855 16 8 11.1074 7.8102 -5.5458 17 6 11.2726 9.1382 -5.3814 18 1 10.9288 9.6172 -4.4765 19 6 11.8838 9.8890 -6.3739 20 7 12.3030 9.3055 -7.4760 21 14 12.1133 11.7287 -6.1458 22 1 11.5612 12.1369 -4.8290 23 1 13.5605 12.0574 -6.1985 24 1 11.4011 12.4544 -7.2280 25 6 10.0000 7.8229 -3.4401 26 6 9.2903 7.1507 -2.4645 27 6 6.2949 3.8655 0.1628 28 6 5.6783 2.4635 0.1277 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8567 0.6440 0.8909 36 1 3.7669 3.1536 0.8434 37 1 2.7214 3.3639 -1.4102 38 1 4.2167 2.7410 -2.1495 39 1 3.9256 5.2959 -0.5024 40 1 4.2411 5.1885 -2.2522 41 1 8.4272 5.5227 -0.5881 42 1 8.5032 4.0307 -1.5557 43 1 9.1625 4.0924 -3.8866 44 1 10.4187 5.2834 -5.6359 45 1 12.7309 9.8307 -8.1702 46 1 10.2376 8.8687 -3.3120 47 1 8.9724 7.6715 -1.5734 48 1 7.3820 3.7868 0.1530 49 1 5.9743 4.3854 1.0656 50 1 6.0726 1.9140 -0.7271 51 1 5.9270 1.9335 1.0472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862430532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:20 Heat of formation + Delta-G solvation = -119.244925 kcal Electronic energy + Delta-G solvation = -29593.218182 eV Core-core repulsion = 25456.907803 eV Total energy + Delta-G solvation = -4136.310379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.36827 -40.62524 -39.34518 -38.50049 -37.95728 -35.24224 -34.40308 -33.10669 -31.89491 -31.76296 -30.92917 -28.31466 -27.51909 -26.94781 -25.62653 -24.20280 -23.63796 -23.03791 -22.31047 -21.20960 -19.91534 -19.80119 -18.82917 -18.14739 -17.27185 -17.02353 -16.91695 -16.64584 -16.31619 -16.10487 -16.01282 -15.80329 -15.51321 -15.30766 -15.13219 -14.78001 -14.58973 -14.42662 -14.33864 -14.20733 -14.12442 -13.66345 -13.57829 -13.19219 -12.98852 -12.78933 -12.69681 -12.48075 -12.33187 -12.25590 -12.21371 -12.19505 -12.11283 -12.05846 -11.76377 -11.36909 -11.25776 -11.17912 -10.86246 -10.68700 -10.54622 -9.76634 -9.57751 -8.89744 -8.47532 -6.15780 0.61209 0.67177 1.33693 1.42447 1.52609 1.72671 2.10640 2.17539 2.82543 2.84527 3.15572 3.52182 3.70295 3.78487 3.84404 3.93703 4.04088 4.07209 4.14717 4.18927 4.25374 4.31188 4.40773 4.46463 4.48316 4.51819 4.53663 4.58071 4.60795 4.66344 4.66983 4.79558 4.84441 4.85294 4.89579 4.94438 4.99821 5.05675 5.09419 5.14067 5.15212 5.22035 5.28808 5.30731 5.53749 5.55892 5.68052 5.71483 5.77844 6.02839 6.22193 6.25455 6.48983 6.97062 7.30300 7.78373 8.76215 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.001611 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.864932 B =17376.815213 C =17432.686957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.054 3.946 4 C -0.108 4.108 5 C -0.077 4.077 6 C -0.125 4.125 7 C 0.107 3.893 8 N -0.613 5.613 9 C 0.509 3.491 10 O -0.585 6.585 11 C -0.076 4.076 12 C -0.145 4.145 13 C -0.058 4.058 14 C -0.206 4.206 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.243 4.243 26 C -0.060 4.060 27 C 0.099 3.901 28 C -0.127 4.127 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.145 0.855 44 H 0.112 0.888 45 H 0.273 0.727 46 H 0.118 0.882 47 H 0.138 0.862 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.060 0.940 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 -16.930 24.195 36.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.341 6.341 3 C -0.022 4.022 4 C -0.145 4.145 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.015 4.015 8 N -0.346 5.346 9 C 0.298 3.702 10 O -0.465 6.465 11 C -0.115 4.115 12 C -0.146 4.146 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.262 4.262 26 C -0.078 4.078 27 C -0.022 4.022 28 C -0.165 4.165 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.156 0.844 48 H 0.124 0.876 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.538 -16.812 23.309 35.324 hybrid contribution -0.029 1.149 -0.875 1.445 sum -20.567 -15.663 22.434 34.229 Atomic orbital electron populations 1.22893 0.79795 1.03636 1.00739 1.87830 1.21244 1.29408 1.95604 1.22747 0.94475 0.84097 1.00840 1.21496 0.92734 0.97195 1.03086 1.21099 0.95857 0.94984 0.97589 1.22054 1.01209 0.94724 0.98331 1.21581 0.80195 0.97857 1.01898 1.48260 1.06218 1.53314 1.26833 1.21221 0.89553 0.77678 0.81709 1.90735 1.81463 1.43768 1.30489 1.20560 0.88455 1.03512 0.98978 1.19279 1.03647 0.94171 0.97532 1.20857 0.94960 0.99863 0.91955 1.20434 1.07548 0.92293 1.02260 1.19927 0.91388 0.93217 0.89316 1.83937 1.64184 1.22858 1.43151 1.21868 1.40916 0.80652 1.05598 0.88261 1.26613 0.95712 1.05870 0.93899 1.70195 1.39134 1.38659 1.07995 0.84512 0.78781 0.73469 0.79304 1.17546 1.18988 1.19414 1.21227 1.07714 1.01078 0.96224 1.20921 0.95053 0.94049 0.97757 1.22084 1.01460 0.91792 0.86853 1.21966 0.94347 0.96386 1.03789 0.93039 0.93589 0.88861 0.92214 0.92995 0.92280 0.90424 0.89278 0.89750 0.92988 0.90101 0.92163 0.85399 0.85412 0.83768 0.87020 0.91845 0.86469 0.84416 0.87629 0.89306 0.92129 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.30 10.70 -148.98 -1.59 -7.90 16 3 C 0.05 0.58 5.70 71.98 0.41 0.99 16 4 C -0.11 -1.02 5.05 30.59 0.15 -0.87 16 5 C -0.08 -0.61 2.15 -10.66 -0.02 -0.64 16 6 C -0.13 -1.54 5.16 30.78 0.16 -1.39 16 7 C 0.11 1.82 6.42 86.36 0.55 2.37 16 8 N -0.61 -10.67 2.97 -818.91 -2.43 -13.10 16 9 C 0.51 13.08 7.69 87.66 0.67 13.75 16 10 O -0.59 -22.15 15.45 -3.03 -0.05 -22.20 16 11 C -0.08 -1.59 4.17 29.10 0.12 -1.46 16 12 C -0.15 -4.78 4.38 -19.84 -0.09 -4.87 16 13 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 14 C -0.21 -9.51 9.99 22.39 0.22 -9.29 16 15 C 0.11 5.96 6.65 22.58 0.15 6.11 16 16 O -0.23 -14.90 9.76 -22.79 -0.22 -15.12 16 17 C -0.41 -25.28 9.49 67.92 0.64 -24.64 16 18 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 19 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 20 N -0.92 -58.40 13.67 21.61 0.30 -58.11 16 21 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 22 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 26 C -0.06 -2.22 9.69 22.25 0.22 -2.01 16 27 C 0.10 0.83 6.34 86.36 0.55 1.38 16 28 C -0.13 -0.89 5.36 30.67 0.16 -0.72 16 29 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.53 6.54 -2.38 -0.02 0.51 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.86 6.52 -2.39 -0.02 0.84 16 38 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.44 7.00 -2.39 -0.02 1.42 16 41 H 0.13 1.84 7.89 -2.38 -0.02 1.83 16 42 H 0.13 1.85 7.63 -2.39 -0.02 1.83 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 45 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 47 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 48 H 0.11 0.58 5.93 -2.39 -0.01 0.56 16 49 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 51 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -85.82 409.58 4.99 -80.83 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.92 Total: 22.93 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 6.05 Total: -33.85 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -2.14 Total: -71.21 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -1.86 Total: -45.21 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -85.82 4.99 -80.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862430532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.412 kcal (2) G-P(sol) polarization free energy of solvation -85.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds