Wall clock time and date at job start Wed Apr 1 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47279 * 2 1 4 4 C 1.42896 * 113.99944 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.57735 * 30.15822 * 4 3 2 6 6 C 1.53091 * 109.52475 * 269.99948 * 4 3 2 7 7 O 1.42902 * 109.42775 * 182.49279 * 6 4 3 8 8 C 1.42899 * 114.09465 * 61.15219 * 7 6 4 9 9 C 1.53100 * 109.41817 * 298.83985 * 8 7 6 10 10 C 1.53176 * 109.53035 * 150.30911 * 4 3 2 11 11 H 1.08996 * 109.53816 * 57.00831 * 10 4 3 12 12 C 1.53008 * 109.61849 * 296.78948 * 10 4 3 13 13 C 1.50699 * 109.46861 * 175.38677 * 12 10 4 14 14 O 1.21276 * 120.00616 * 0.02562 * 13 12 10 15 15 N 1.34783 * 119.99714 * 180.02562 * 13 12 10 16 16 C 1.46491 * 119.99838 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46800 * 179.97438 * 16 15 13 18 18 C 1.38630 * 119.75125 * 269.72128 * 17 16 15 19 19 C 1.37619 * 120.25117 * 179.76551 * 18 17 16 20 20 C 1.40716 * 119.74262 * 0.48647 * 19 18 17 21 21 C 1.41397 * 120.24577 * 179.78967 * 20 19 18 22 22 H 1.07999 * 119.99597 * 204.38293 * 21 20 19 23 23 C 1.39947 * 119.99718 * 24.37798 * 21 20 19 24 24 N 1.30821 * 120.00105 * 17.87217 * 23 21 20 25 25 Si 1.86801 * 119.99575 * 197.86641 * 23 21 20 26 26 H 1.48496 * 109.46939 * 60.00395 * 25 23 21 27 27 H 1.48507 * 109.46876 * 180.02562 * 25 23 21 28 28 H 1.48491 * 109.47447 * 300.00066 * 25 23 21 29 29 C 1.40719 * 119.50928 * 359.77290 * 20 19 18 30 30 C 1.37620 * 119.74734 * 359.97438 * 29 20 19 31 31 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47270 * 300.00066 * 1 2 3 33 33 H 1.09007 * 109.47070 * 60.00241 * 1 2 3 34 34 H 1.08996 * 109.47270 * 239.99934 * 2 1 3 35 35 H 1.08999 * 109.46827 * 119.99915 * 2 1 3 36 36 H 1.09004 * 109.47861 * 62.50239 * 6 4 3 37 37 H 1.09003 * 109.47694 * 302.48642 * 6 4 3 38 38 H 1.08998 * 109.48379 * 58.82404 * 8 7 6 39 39 H 1.09003 * 109.48123 * 178.85325 * 8 7 6 40 40 H 1.08997 * 109.52380 * 177.51889 * 9 8 7 41 41 H 1.08994 * 109.52185 * 297.64776 * 9 8 7 42 42 H 1.08997 * 109.47009 * 295.38871 * 12 10 4 43 43 H 1.08994 * 109.46671 * 55.38752 * 12 10 4 44 44 H 0.96998 * 119.99521 * 359.97438 * 15 13 12 45 45 H 1.09000 * 109.47697 * 299.99779 * 16 15 13 46 46 H 1.08998 * 109.47452 * 60.00681 * 16 15 13 47 47 H 1.08009 * 119.87601 * 0.02562 * 18 17 16 48 48 H 1.07998 * 120.13200 * 180.28470 * 19 18 17 49 49 H 0.97003 * 119.99740 * 179.97438 * 24 23 21 50 50 H 1.08000 * 120.12351 * 180.02562 * 29 20 19 51 51 H 1.07996 * 119.87717 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8653 0.6036 -0.5150 6 6 3.9403 1.5007 1.4437 7 8 5.3590 1.6718 1.4423 8 6 5.7997 2.8848 0.8287 9 6 5.3654 2.8997 -0.6393 10 6 3.8427 2.7506 -0.7145 11 1 3.3684 3.6035 -0.2292 12 6 3.4064 2.6877 -2.1797 13 6 3.7111 4.0018 -2.8514 14 8 4.2269 4.9001 -2.2206 15 7 3.4105 4.1789 -4.1532 16 6 3.7072 5.4562 -4.8063 17 6 3.2773 5.3942 -6.2494 18 6 4.1722 4.9615 -7.2158 19 6 3.7891 4.8963 -8.5360 20 6 2.4866 5.2807 -8.9047 21 6 2.0832 5.2222 -10.2586 22 1 1.2798 5.8525 -10.6103 23 6 2.7249 4.3476 -11.1428 24 7 3.4358 3.3526 -10.6779 25 14 2.5662 4.6009 -12.9867 26 1 3.1028 5.9367 -13.3508 27 1 3.3337 3.5476 -13.6989 28 1 1.1356 4.5191 -13.3763 29 6 1.5885 5.7235 -7.9160 30 6 1.9917 5.7755 -6.6012 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.6873 0.5663 1.9449 37 1 3.4742 2.3334 1.9704 38 1 5.3580 3.7358 1.3471 39 1 6.8864 2.9477 0.8869 40 1 5.6621 3.8432 -1.0974 41 1 5.8398 2.0730 -1.1679 42 1 3.9463 1.8872 -2.6855 43 1 2.3353 2.4928 -2.2317 44 1 2.9983 3.4603 -4.6578 45 1 3.1679 6.2570 -4.3003 46 1 4.7785 5.6504 -4.7548 47 1 5.1726 4.6705 -6.9310 48 1 4.4863 4.5546 -9.2866 49 1 3.8803 2.7462 -11.2908 50 1 0.5864 6.0205 -8.1878 51 1 1.3041 6.1146 -5.8406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869059829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:22 Heat of formation + Delta-G solvation = -134.511570 kcal Electronic energy + Delta-G solvation = -29994.603962 eV Core-core repulsion = 25857.631572 eV Total energy + Delta-G solvation = -4136.972391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.39906 -39.13006 -37.72252 -37.67524 -34.92298 -34.27670 -33.43368 -31.79663 -30.65822 -29.97082 -29.39969 -28.85166 -26.75133 -24.34278 -23.72535 -23.06573 -22.82801 -21.10476 -20.51223 -20.15116 -19.87770 -17.47281 -17.41367 -16.97938 -16.53569 -16.15693 -15.74036 -15.51279 -15.37570 -15.28508 -14.86394 -14.59200 -14.10156 -13.87809 -13.74306 -13.59936 -13.34481 -12.95918 -12.82694 -12.63157 -12.55922 -12.51734 -12.21350 -12.05766 -11.81463 -11.73660 -11.67149 -11.38287 -11.16730 -11.11811 -11.07535 -10.88347 -10.74666 -10.60786 -10.49400 -10.23489 -9.80570 -9.65417 -9.51184 -9.33486 -9.20942 -8.63083 -7.59694 -7.47315 -6.89398 -4.48803 2.56356 2.89661 2.95831 2.99565 3.00616 3.06507 3.18920 3.65967 3.77542 3.83527 4.42658 4.44522 4.54404 4.59728 4.74776 4.78990 4.87872 4.93580 5.05093 5.10728 5.15245 5.27623 5.32394 5.38031 5.43346 5.49301 5.57625 5.61110 5.65511 5.69554 5.82690 5.83430 5.85814 5.90217 6.08151 6.12921 6.21734 6.29259 6.32516 6.75680 6.84230 6.85208 6.95320 7.05825 7.16068 7.24233 7.48681 7.68086 7.92811 7.93534 7.99514 8.17044 8.50813 8.53321 8.76395 8.84217 10.04589 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.001924 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.448088 B =14547.888973 C =15338.288536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.061 3.939 5 H 0.070 0.930 6 C 0.043 3.957 7 O -0.381 6.381 8 C 0.059 3.941 9 C -0.154 4.154 10 C -0.066 4.066 11 H 0.088 0.912 12 C -0.136 4.136 13 C 0.508 3.492 14 O -0.553 6.553 15 N -0.718 5.718 16 C 0.184 3.816 17 C -0.245 4.245 18 C -0.082 4.082 19 C -0.169 4.169 20 C 0.116 3.884 21 C -0.458 4.458 22 H 0.079 0.921 23 C 0.076 3.924 24 N -0.788 5.788 25 Si 0.910 3.090 26 H -0.263 1.263 27 H -0.278 1.278 28 H -0.265 1.265 29 C -0.230 4.230 30 C -0.070 4.070 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.401 0.599 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.118 0.882 49 H 0.283 0.717 50 H 0.093 0.907 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 -7.741 17.969 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.295 6.295 4 C 0.003 3.997 5 H 0.088 0.912 6 C -0.034 4.034 7 O -0.300 6.300 8 C -0.018 4.018 9 C -0.192 4.192 10 C -0.085 4.085 11 H 0.106 0.894 12 C -0.176 4.176 13 C 0.294 3.706 14 O -0.433 6.433 15 N -0.369 5.369 16 C 0.063 3.937 17 C -0.247 4.247 18 C -0.101 4.101 19 C -0.189 4.189 20 C 0.114 3.886 21 C -0.487 4.487 22 H 0.097 0.903 23 C -0.143 4.143 24 N -0.413 5.413 25 Si 0.734 3.266 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.189 1.189 29 C -0.249 4.249 30 C -0.089 4.089 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.117 0.883 44 H 0.235 0.765 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.136 0.864 49 H 0.094 0.906 50 H 0.111 0.889 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.649 -7.273 18.402 19.798 hybrid contribution -0.377 -0.485 -1.360 1.492 sum 0.272 -7.758 17.042 18.727 Atomic orbital electron populations 1.21750 0.93588 1.02293 1.03310 1.22552 0.95731 0.83785 1.00124 1.87947 1.20124 1.26433 1.94972 1.22806 0.81595 0.98893 0.96400 0.91212 1.22994 0.81888 1.02405 0.96119 1.87929 1.20927 1.41450 1.79668 1.22671 1.00114 0.86550 0.92438 1.22420 0.94460 1.04830 0.97475 1.20996 0.96189 0.96990 0.94338 0.89389 1.21674 1.04046 0.96201 0.95659 1.20609 0.78263 0.89489 0.82223 1.90614 1.44100 1.44234 1.64339 1.46561 1.62290 1.17715 1.10285 1.19933 0.99248 0.84176 0.90378 1.18994 0.96419 1.16742 0.92545 1.20555 0.96947 0.98927 0.93637 1.21314 0.96771 1.06152 0.94636 1.17667 0.90672 0.87676 0.92625 1.19631 1.16300 1.19279 0.93534 0.90298 1.25950 0.93184 0.93408 1.01755 1.69808 1.23751 1.09880 1.37814 0.86340 0.79528 0.79246 0.81514 1.18707 1.20252 1.18913 1.20978 0.98700 1.12654 0.92612 1.20405 0.94374 0.98647 0.95457 0.91106 0.91880 0.91611 0.93134 0.93480 0.89049 0.92263 0.92802 0.88605 0.87877 0.91435 0.89283 0.88250 0.76486 0.92510 0.92474 0.89444 0.86371 0.90641 0.88904 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.42 6.47 37.16 0.24 0.66 16 3 O -0.38 -3.81 9.40 -35.23 -0.33 -4.14 16 4 C 0.06 0.60 2.21 -26.59 -0.06 0.54 16 5 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 6 C 0.04 0.41 6.46 37.20 0.24 0.65 16 7 O -0.38 -4.13 10.77 -35.23 -0.38 -4.51 16 8 C 0.06 0.58 6.84 37.21 0.25 0.84 16 9 C -0.15 -1.68 5.12 -26.59 -0.14 -1.82 16 10 C -0.07 -0.74 1.64 -90.43 -0.15 -0.88 16 11 H 0.09 1.13 7.96 -51.93 -0.41 0.71 16 12 C -0.14 -1.55 5.13 -27.88 -0.14 -1.69 16 13 C 0.51 7.56 7.57 -10.98 -0.08 7.47 16 14 O -0.55 -9.74 13.98 5.56 0.08 -9.67 16 15 N -0.72 -11.16 5.55 -61.48 -0.34 -11.50 16 16 C 0.18 3.28 5.79 -5.19 -0.03 3.25 16 17 C -0.25 -5.00 5.27 -104.33 -0.55 -5.55 16 18 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 19 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 20 C 0.12 2.96 5.58 -106.82 -0.60 2.37 16 21 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 22 H 0.08 1.93 7.91 -52.49 -0.42 1.52 16 23 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 24 N -0.79 -19.46 10.95 55.55 0.61 -18.85 16 25 Si 0.91 17.92 29.60 -169.99 -5.03 12.89 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 27 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 28 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 29 C -0.23 -5.38 9.80 -38.87 -0.38 -5.76 16 30 C -0.07 -1.48 9.67 -39.66 -0.38 -1.87 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.05 0.31 7.93 -51.93 -0.41 -0.10 16 36 H 0.09 0.73 7.93 -51.93 -0.41 0.31 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.33 6.03 -51.93 -0.31 1.01 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.09 7.66 -51.93 -0.40 0.69 16 44 H 0.40 5.85 8.46 -40.82 -0.35 5.51 16 45 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 46 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 47 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 48 H 0.12 3.03 6.15 -52.49 -0.32 2.71 16 49 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 50 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 51 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 411.63 15.07 6.20 6.20 Total: -1.00 -27.83 411.63 -10.22 -38.05 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -8.48 Total: 10.99 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.54 Total: -19.46 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.27 Total: -30.36 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.63 Total: -18.32 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -27.83 -10.22 -38.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869059829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.463 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds