Wall clock time and date at job start Wed Apr 1 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47279 * 2 1 4 4 C 1.42896 * 113.99944 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.57735 * 30.15822 * 4 3 2 6 6 C 1.53091 * 109.52475 * 269.99948 * 4 3 2 7 7 O 1.42902 * 109.42775 * 182.49279 * 6 4 3 8 8 C 1.42899 * 114.09465 * 61.15219 * 7 6 4 9 9 C 1.53100 * 109.41817 * 298.83985 * 8 7 6 10 10 C 1.53176 * 109.53035 * 150.30911 * 4 3 2 11 11 H 1.08996 * 109.53816 * 57.00831 * 10 4 3 12 12 C 1.53008 * 109.61849 * 296.78948 * 10 4 3 13 13 C 1.50699 * 109.46861 * 175.38677 * 12 10 4 14 14 O 1.21276 * 120.00616 * 0.02562 * 13 12 10 15 15 N 1.34783 * 119.99714 * 180.02562 * 13 12 10 16 16 C 1.46491 * 119.99838 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46800 * 179.97438 * 16 15 13 18 18 C 1.38630 * 119.75125 * 269.72128 * 17 16 15 19 19 C 1.37619 * 120.25117 * 179.76551 * 18 17 16 20 20 C 1.40716 * 119.74262 * 0.48647 * 19 18 17 21 21 C 1.41397 * 120.24577 * 179.78967 * 20 19 18 22 22 H 1.07999 * 119.99597 * 204.38293 * 21 20 19 23 23 C 1.39947 * 119.99718 * 24.37798 * 21 20 19 24 24 N 1.30821 * 120.00105 * 17.87217 * 23 21 20 25 25 Si 1.86801 * 119.99575 * 197.86641 * 23 21 20 26 26 H 1.48496 * 109.46939 * 60.00395 * 25 23 21 27 27 H 1.48507 * 109.46876 * 180.02562 * 25 23 21 28 28 H 1.48491 * 109.47447 * 300.00066 * 25 23 21 29 29 C 1.40719 * 119.50928 * 359.77290 * 20 19 18 30 30 C 1.37620 * 119.74734 * 359.97438 * 29 20 19 31 31 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47270 * 300.00066 * 1 2 3 33 33 H 1.09007 * 109.47070 * 60.00241 * 1 2 3 34 34 H 1.08996 * 109.47270 * 239.99934 * 2 1 3 35 35 H 1.08999 * 109.46827 * 119.99915 * 2 1 3 36 36 H 1.09004 * 109.47861 * 62.50239 * 6 4 3 37 37 H 1.09003 * 109.47694 * 302.48642 * 6 4 3 38 38 H 1.08998 * 109.48379 * 58.82404 * 8 7 6 39 39 H 1.09003 * 109.48123 * 178.85325 * 8 7 6 40 40 H 1.08997 * 109.52380 * 177.51889 * 9 8 7 41 41 H 1.08994 * 109.52185 * 297.64776 * 9 8 7 42 42 H 1.08997 * 109.47009 * 295.38871 * 12 10 4 43 43 H 1.08994 * 109.46671 * 55.38752 * 12 10 4 44 44 H 0.96998 * 119.99521 * 359.97438 * 15 13 12 45 45 H 1.09000 * 109.47697 * 299.99779 * 16 15 13 46 46 H 1.08998 * 109.47452 * 60.00681 * 16 15 13 47 47 H 1.08009 * 119.87601 * 0.02562 * 18 17 16 48 48 H 1.07998 * 120.13200 * 180.28470 * 19 18 17 49 49 H 0.97003 * 119.99740 * 179.97438 * 24 23 21 50 50 H 1.08000 * 120.12351 * 180.02562 * 29 20 19 51 51 H 1.07996 * 119.87717 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8653 0.6036 -0.5150 6 6 3.9403 1.5007 1.4437 7 8 5.3590 1.6718 1.4423 8 6 5.7997 2.8848 0.8287 9 6 5.3654 2.8997 -0.6393 10 6 3.8427 2.7506 -0.7145 11 1 3.3684 3.6035 -0.2292 12 6 3.4064 2.6877 -2.1797 13 6 3.7111 4.0018 -2.8514 14 8 4.2269 4.9001 -2.2206 15 7 3.4105 4.1789 -4.1532 16 6 3.7072 5.4562 -4.8063 17 6 3.2773 5.3942 -6.2494 18 6 4.1722 4.9615 -7.2158 19 6 3.7891 4.8963 -8.5360 20 6 2.4866 5.2807 -8.9047 21 6 2.0832 5.2222 -10.2586 22 1 1.2798 5.8525 -10.6103 23 6 2.7249 4.3476 -11.1428 24 7 3.4358 3.3526 -10.6779 25 14 2.5662 4.6009 -12.9867 26 1 3.1028 5.9367 -13.3508 27 1 3.3337 3.5476 -13.6989 28 1 1.1356 4.5191 -13.3763 29 6 1.5885 5.7235 -7.9160 30 6 1.9917 5.7755 -6.6012 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.6873 0.5663 1.9449 37 1 3.4742 2.3334 1.9704 38 1 5.3580 3.7358 1.3471 39 1 6.8864 2.9477 0.8869 40 1 5.6621 3.8432 -1.0974 41 1 5.8398 2.0730 -1.1679 42 1 3.9463 1.8872 -2.6855 43 1 2.3353 2.4928 -2.2317 44 1 2.9983 3.4603 -4.6578 45 1 3.1679 6.2570 -4.3003 46 1 4.7785 5.6504 -4.7548 47 1 5.1726 4.6705 -6.9310 48 1 4.4863 4.5546 -9.2866 49 1 3.8803 2.7462 -11.2908 50 1 0.5864 6.0205 -8.1878 51 1 1.3041 6.1146 -5.8406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869059829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:21 Heat of formation + Delta-G solvation = -149.663152 kcal Electronic energy + Delta-G solvation = -29995.260984 eV Core-core repulsion = 25857.631572 eV Total energy + Delta-G solvation = -4137.629412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.34492 -40.27305 -39.38996 -38.42884 -36.38243 -35.32119 -35.01120 -32.44288 -32.22174 -31.20181 -30.82122 -29.89330 -28.28882 -25.67595 -24.60776 -24.14750 -23.47081 -22.90883 -21.83628 -21.48908 -20.98430 -19.24617 -18.37354 -17.91938 -17.37899 -17.26427 -17.08392 -16.65320 -16.49570 -16.20026 -15.90238 -15.81435 -15.59626 -15.35216 -15.10245 -14.51337 -14.38304 -14.21739 -13.93851 -13.83940 -13.66779 -13.60499 -13.43387 -13.38880 -13.12056 -12.85075 -12.73349 -12.65887 -12.49032 -12.38269 -12.14651 -12.10854 -11.95987 -11.70692 -11.51830 -11.39960 -11.30081 -11.06910 -10.97012 -10.79567 -10.16132 -9.95936 -9.40481 -9.28652 -8.67722 -6.37497 0.84760 1.12523 1.38233 1.47612 1.51204 1.70516 2.18996 2.35696 2.49968 2.77780 3.03270 3.59570 3.61606 3.74301 3.78984 3.94751 4.05934 4.15922 4.20808 4.24609 4.30081 4.32453 4.33772 4.43098 4.50051 4.52475 4.52828 4.65237 4.69489 4.73112 4.77267 4.81933 4.85731 4.90378 5.03544 5.04514 5.06770 5.13657 5.18921 5.24326 5.32010 5.34483 5.42119 5.54832 5.67475 5.90514 6.03280 6.07603 6.19403 6.34644 6.35255 6.66576 6.66938 6.90926 6.99738 7.31125 8.28584 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.001924 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.448088 B =14547.888973 C =15338.288536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.392 6.392 4 C 0.068 3.932 5 H 0.080 0.920 6 C 0.042 3.958 7 O -0.391 6.391 8 C 0.059 3.941 9 C -0.150 4.150 10 C -0.065 4.065 11 H 0.067 0.933 12 C -0.126 4.126 13 C 0.508 3.492 14 O -0.580 6.580 15 N -0.717 5.717 16 C 0.194 3.806 17 C -0.227 4.227 18 C -0.082 4.082 19 C -0.192 4.192 20 C 0.086 3.914 21 C -0.497 4.497 22 H 0.076 0.924 23 C 0.037 3.963 24 N -0.818 5.818 25 Si 0.980 3.020 26 H -0.262 1.262 27 H -0.267 1.267 28 H -0.259 1.259 29 C -0.244 4.244 30 C -0.069 4.069 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.407 0.593 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.290 0.710 50 H 0.097 0.903 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 -8.958 18.920 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.312 6.312 4 C 0.010 3.990 5 H 0.098 0.902 6 C -0.035 4.035 7 O -0.310 6.310 8 C -0.017 4.017 9 C -0.187 4.187 10 C -0.084 4.084 11 H 0.085 0.915 12 C -0.166 4.166 13 C 0.297 3.703 14 O -0.461 6.461 15 N -0.367 5.367 16 C 0.071 3.929 17 C -0.229 4.229 18 C -0.101 4.101 19 C -0.212 4.212 20 C 0.083 3.917 21 C -0.526 4.526 22 H 0.094 0.906 23 C -0.179 4.179 24 N -0.444 5.444 25 Si 0.801 3.199 26 H -0.186 1.186 27 H -0.191 1.191 28 H -0.183 1.183 29 C -0.264 4.264 30 C -0.088 4.088 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.243 0.757 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.100 0.900 50 H 0.116 0.884 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.539 -8.505 19.372 21.164 hybrid contribution -0.351 -0.090 -1.471 1.515 sum 0.188 -8.595 17.902 19.859 Atomic orbital electron populations 1.21770 0.93205 1.03268 1.02613 1.22743 0.96094 0.82847 1.01135 1.87933 1.20135 1.28036 1.95075 1.22697 0.81718 0.98156 0.96415 0.90214 1.23083 0.81218 1.03146 0.96089 1.87918 1.21702 1.41640 1.79700 1.22704 1.00973 0.86357 0.91688 1.22332 0.94378 1.03904 0.98103 1.20962 0.96193 0.97204 0.94071 0.91458 1.21659 1.04820 0.94497 0.95602 1.21155 0.77227 0.90346 0.81612 1.90614 1.45210 1.45501 1.64809 1.46396 1.62596 1.17051 1.10704 1.19717 0.99155 0.85404 0.88649 1.19217 0.95678 1.14257 0.93699 1.20752 0.98052 0.98385 0.92922 1.21271 0.96575 1.07787 0.95521 1.18002 0.91455 0.88773 0.93465 1.19865 1.17604 1.20648 0.94494 0.90581 1.26745 0.92491 0.92593 1.06086 1.69852 1.24472 1.10524 1.39512 0.85275 0.79704 0.79192 0.75726 1.18634 1.19124 1.18348 1.21164 0.98833 1.13013 0.93367 1.20674 0.95111 0.97814 0.95154 0.89328 0.92228 0.92633 0.92434 0.92116 0.87325 0.92694 0.93009 0.87233 0.89959 0.90711 0.87251 0.87410 0.75727 0.92346 0.92554 0.87734 0.88074 0.89979 0.88440 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.63 6.47 71.98 0.47 1.10 16 3 O -0.39 -7.21 9.40 -148.98 -1.40 -8.61 16 4 C 0.07 1.19 2.21 30.68 0.07 1.26 16 5 H 0.08 1.24 7.79 -2.39 -0.02 1.22 16 6 C 0.04 0.71 6.46 72.01 0.47 1.17 16 7 O -0.39 -7.78 10.77 -148.98 -1.60 -9.39 16 8 C 0.06 1.10 6.84 72.02 0.49 1.59 16 9 C -0.15 -3.08 5.12 30.69 0.16 -2.92 16 10 C -0.07 -1.37 1.64 -10.67 -0.02 -1.38 16 11 H 0.07 1.69 7.96 -2.39 -0.02 1.68 16 12 C -0.13 -2.64 5.13 29.85 0.15 -2.48 16 13 C 0.51 14.38 7.57 87.66 0.66 15.04 16 14 O -0.58 -19.96 13.98 -3.02 -0.04 -20.00 16 15 N -0.72 -20.99 5.55 -466.80 -2.59 -23.58 16 16 C 0.19 6.55 5.79 85.64 0.50 7.05 16 17 C -0.23 -8.98 5.27 -19.67 -0.10 -9.09 16 18 C -0.08 -3.59 9.67 22.22 0.21 -3.38 16 19 C -0.19 -9.72 8.70 22.73 0.20 -9.52 16 20 C 0.09 4.47 5.58 -21.29 -0.12 4.35 16 21 C -0.50 -26.08 9.05 23.46 0.21 -25.87 16 22 H 0.08 3.86 7.91 -2.91 -0.02 3.83 16 23 C 0.04 1.79 5.14 85.26 0.44 2.23 16 24 N -0.82 -41.28 10.95 21.83 0.24 -41.04 16 25 Si 0.98 37.01 29.60 68.60 2.03 39.04 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 27 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 28 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 29 C -0.24 -11.52 9.80 22.73 0.22 -11.30 16 30 C -0.07 -2.84 9.67 22.22 0.21 -2.63 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 35 H 0.06 0.63 7.93 -2.39 -0.02 0.62 16 36 H 0.11 1.45 7.93 -2.39 -0.02 1.44 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.07 6.03 -2.39 -0.01 2.06 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.11 2.13 7.66 -2.39 -0.02 2.11 16 44 H 0.41 11.07 8.46 -92.71 -0.78 10.28 16 45 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 46 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 47 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 48 H 0.10 5.39 6.15 -2.91 -0.02 5.37 16 49 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 50 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 51 H 0.11 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -60.63 411.63 1.73 -58.90 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: 0.13 Total: 40.52 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.96 Total: -35.86 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -2.35 Total: -64.62 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -3.05 Total: -37.99 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -60.63 1.73 -58.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869059829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.759 kcal (2) G-P(sol) polarization free energy of solvation -60.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds