Wall clock time and date at job start Wed Apr 1 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46663 * 2 1 4 4 C 1.42908 * 113.99701 * 174.09038 * 3 2 1 5 5 H 1.08997 * 109.46851 * 3.38952 * 4 3 2 6 6 C 1.50695 * 109.47320 * 123.39068 * 4 3 2 7 7 O 1.21292 * 119.99964 * 7.50125 * 6 4 3 8 8 N 1.34774 * 120.00378 * 187.50341 * 6 4 3 9 9 C 1.46499 * 120.00241 * 174.32204 * 8 6 4 10 10 C 1.50705 * 109.46949 * 179.97438 * 9 8 6 11 11 C 1.38635 * 119.74817 * 269.72726 * 10 9 8 12 12 C 1.37618 * 120.24305 * 179.72230 * 11 10 9 13 13 C 1.40716 * 119.74863 * 0.56977 * 12 11 10 14 14 C 1.41390 * 120.24533 * 179.68120 * 13 12 11 15 15 H 1.08001 * 119.99964 * 159.80424 * 14 13 12 16 16 C 1.39946 * 120.00162 * 339.80360 * 14 13 12 17 17 N 1.30822 * 119.99964 * 333.75894 * 16 14 13 18 18 Si 1.86803 * 120.00168 * 153.76286 * 16 14 13 19 19 H 1.48498 * 109.47039 * 94.98802 * 18 16 14 20 20 H 1.48500 * 109.46820 * 214.98579 * 18 16 14 21 21 H 1.48497 * 109.47093 * 334.98930 * 18 16 14 22 22 C 1.40714 * 119.50831 * 359.70383 * 13 12 11 23 23 C 1.37618 * 119.74855 * 0.02562 * 22 13 12 24 24 C 1.53002 * 109.46691 * 243.39177 * 4 3 2 25 25 C 1.53172 * 109.54167 * 61.16476 * 24 4 3 26 26 C 1.53114 * 109.15425 * 183.24096 * 25 24 4 27 27 O 1.42901 * 109.48767 * 57.46756 * 26 25 24 28 28 C 1.42903 * 114.09963 * 298.89416 * 27 26 25 29 29 C 1.53089 * 109.41701 * 61.15779 * 28 27 26 30 30 H 1.08997 * 109.46848 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47042 * 299.99586 * 1 2 3 32 32 H 1.08997 * 109.47543 * 60.00250 * 1 2 3 33 33 H 1.08995 * 109.46979 * 240.00061 * 2 1 3 34 34 H 1.08997 * 109.47543 * 119.99750 * 2 1 3 35 35 H 0.97002 * 119.99416 * 354.32285 * 8 6 4 36 36 H 1.08998 * 109.47333 * 300.00081 * 9 8 6 37 37 H 1.09001 * 109.47190 * 60.00209 * 9 8 6 38 38 H 1.07997 * 119.87608 * 359.97438 * 11 10 9 39 39 H 1.08007 * 120.12247 * 180.28268 * 12 11 10 40 40 H 0.97004 * 120.00628 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.12784 * 179.97438 * 22 13 12 42 42 H 1.07994 * 119.87847 * 180.02562 * 23 22 13 43 43 H 1.09005 * 109.53920 * 181.33928 * 24 4 3 44 44 H 1.09000 * 109.52331 * 303.04804 * 25 24 4 45 45 H 1.08998 * 109.52959 * 63.24617 * 25 24 4 46 46 H 1.09006 * 109.39974 * 297.49064 * 26 25 24 47 47 H 1.08994 * 109.48032 * 177.50400 * 26 25 24 48 48 H 1.08996 * 109.48087 * 301.17100 * 28 27 26 49 49 H 1.09005 * 109.47743 * 181.13958 * 28 27 26 50 50 H 1.08999 * 109.52561 * 182.48680 * 29 28 27 51 51 H 1.09004 * 109.52197 * 62.29530 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4243 1.4625 0.1344 5 1 3.8696 0.4678 0.1511 6 6 3.9778 2.2412 -1.0310 7 8 3.2236 2.7725 -1.8184 8 7 5.3109 2.3473 -1.1984 9 6 5.8494 2.9967 -2.3962 10 6 7.3553 2.9854 -2.3397 11 6 8.0295 4.0436 -1.7500 12 6 9.4043 4.0411 -1.6877 13 6 10.1261 2.9649 -2.2361 14 6 11.5390 2.9548 -2.1839 15 1 12.0768 2.0248 -2.2945 16 6 12.2406 4.1499 -1.9888 17 7 11.7089 5.2877 -2.3549 18 14 13.9364 4.1203 -1.2059 19 1 14.9724 4.0990 -2.2695 20 1 14.1146 5.3316 -0.3655 21 1 14.0701 2.9070 -0.3603 22 6 9.4314 1.8990 -2.8372 23 6 8.0561 1.9199 -2.8832 24 6 3.7554 2.1915 1.4382 25 6 3.2188 1.3865 2.6258 26 6 3.4830 2.1624 3.9191 27 8 2.8713 3.4511 3.8353 28 6 3.3695 4.2655 2.7720 29 6 3.0987 3.5753 1.4326 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.9138 1.9937 -0.5258 36 1 5.5147 2.4584 -3.2829 37 1 5.4956 4.0267 -2.4413 38 1 7.4736 4.8709 -1.3343 39 1 9.9273 4.8644 -1.2237 40 1 12.1953 6.1161 -2.2201 41 1 9.9754 1.0682 -3.2616 42 1 7.5208 1.1028 -3.3437 43 1 4.8360 2.3011 1.5304 44 1 2.1461 1.2334 2.5072 45 1 3.7229 0.4211 2.6692 46 1 4.5578 2.2786 4.0585 47 1 3.0638 1.6151 4.7634 48 1 4.4427 4.4093 2.8964 49 1 2.8684 5.2334 2.7900 50 1 3.5170 4.1737 0.6233 51 1 2.0235 3.4677 1.2891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869062485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:37 Heat of formation + Delta-G solvation = -147.519325 kcal Electronic energy + Delta-G solvation = -30793.997281 eV Core-core repulsion = 26656.460832 eV Total energy + Delta-G solvation = -4137.536449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.49159 -40.03529 -39.42339 -38.55402 -36.32304 -35.36891 -34.91408 -32.26856 -32.06475 -31.95937 -31.18273 -29.53644 -28.00485 -25.55897 -24.68082 -24.31977 -23.62671 -22.91239 -21.84925 -21.58857 -20.92323 -19.26133 -18.56288 -17.97342 -17.43146 -17.18450 -16.90052 -16.65674 -16.36598 -16.10229 -15.90555 -15.72219 -15.56926 -15.37291 -15.17961 -14.90498 -14.71247 -14.29527 -14.04442 -13.84412 -13.64796 -13.33743 -13.29488 -13.22373 -13.03799 -12.95844 -12.81005 -12.74507 -12.41463 -12.26340 -12.23432 -12.18406 -12.00705 -11.76712 -11.50270 -11.32095 -11.26468 -11.10564 -10.95379 -10.64647 -10.23726 -10.03078 -9.41174 -9.33293 -8.76093 -6.34912 0.84025 1.13527 1.37743 1.44779 1.54400 1.57465 2.07025 2.18014 2.64028 2.91048 2.97463 3.52649 3.58027 3.71836 3.78892 3.96365 4.00341 4.10632 4.16779 4.22339 4.29733 4.32560 4.34445 4.44894 4.48353 4.52031 4.58679 4.64181 4.68378 4.71774 4.78439 4.79871 4.84610 4.90692 5.03262 5.03751 5.11612 5.12749 5.15497 5.26902 5.33731 5.38296 5.41029 5.46850 5.66769 5.91159 6.06931 6.11787 6.20531 6.27044 6.34447 6.63290 6.65945 6.89656 7.00317 7.24778 8.21646 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.002389 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.315590 B =11717.623490 C =12890.643601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.374 6.374 4 C 0.086 3.914 5 H 0.116 0.884 6 C 0.498 3.502 7 O -0.576 6.576 8 N -0.709 5.709 9 C 0.196 3.804 10 C -0.234 4.234 11 C -0.077 4.077 12 C -0.202 4.202 13 C 0.089 3.911 14 C -0.497 4.497 15 H 0.079 0.921 16 C 0.043 3.957 17 N -0.808 5.808 18 Si 0.976 3.024 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.257 1.257 22 C -0.249 4.249 23 C -0.063 4.063 24 C -0.092 4.092 25 C -0.142 4.142 26 C 0.055 3.945 27 O -0.402 6.402 28 C 0.064 3.936 29 C -0.141 4.141 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.409 0.591 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.292 0.708 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.111 0.889 48 H 0.057 0.943 49 H 0.097 0.903 50 H 0.052 0.948 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 -9.165 11.935 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.292 6.292 4 C 0.025 3.975 5 H 0.133 0.867 6 C 0.285 3.715 7 O -0.455 6.455 8 N -0.361 5.361 9 C 0.073 3.927 10 C -0.236 4.236 11 C -0.096 4.096 12 C -0.221 4.221 13 C 0.086 3.914 14 C -0.525 4.525 15 H 0.097 0.903 16 C -0.175 4.175 17 N -0.432 5.432 18 Si 0.796 3.204 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.180 1.180 22 C -0.268 4.268 23 C -0.081 4.081 24 C -0.111 4.111 25 C -0.179 4.179 26 C -0.021 4.021 27 O -0.321 6.321 28 C -0.013 4.013 29 C -0.179 4.179 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.246 0.754 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.129 0.871 48 H 0.076 0.924 49 H 0.115 0.885 50 H 0.071 0.929 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.792 -8.327 11.421 20.459 hybrid contribution 1.492 0.098 -0.279 1.521 sum -13.300 -8.229 11.142 19.202 Atomic orbital electron populations 1.21735 0.92925 1.03387 1.02429 1.22887 0.96553 0.82638 1.01063 1.88030 1.19049 1.28104 1.94005 1.22009 0.83722 1.00031 0.91784 0.86664 1.21437 0.82290 0.80856 0.86945 1.90673 1.59018 1.48310 1.47489 1.46300 1.06150 1.59693 1.24005 1.19681 0.89562 0.96521 0.86947 1.19105 0.93034 0.98412 1.13021 1.20696 0.93804 0.96879 0.98190 1.21165 0.93338 1.01026 1.06586 1.17961 0.93834 0.91548 0.88044 1.19886 0.92189 0.94933 1.45482 0.90322 1.26795 1.04288 0.94080 0.92387 1.69908 1.40766 1.00386 1.32117 0.85289 0.76509 0.79405 0.79176 1.18674 1.18976 1.18020 1.21088 0.94380 1.01816 1.09534 1.20653 0.93405 0.96724 0.97328 1.21557 1.01130 0.95286 0.93164 1.22200 1.02680 0.99596 0.93444 1.22771 0.98155 0.83266 0.97941 1.87901 1.64975 1.27728 1.51478 1.22586 0.99185 0.94122 0.85413 1.22039 1.01739 0.96185 0.97915 0.88781 0.91934 0.93344 0.93512 0.90718 0.75436 0.92385 0.93160 0.88048 0.88550 0.89744 0.88432 0.86694 0.88637 0.90932 0.88246 0.92263 0.87118 0.92434 0.88535 0.92926 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.04 0.75 6.22 71.98 0.45 1.20 16 3 O -0.37 -9.01 8.09 -130.05 -1.05 -10.06 16 4 C 0.09 1.85 2.38 29.85 0.07 1.92 16 5 H 0.12 1.80 7.61 -2.39 -0.02 1.78 16 6 C 0.50 14.76 6.03 87.66 0.53 15.29 16 7 O -0.58 -22.46 16.53 15.86 0.26 -22.20 16 8 N -0.71 -20.14 5.54 -466.78 -2.58 -22.72 16 9 C 0.20 6.67 5.80 85.63 0.50 7.16 16 10 C -0.23 -9.13 5.27 -19.67 -0.10 -9.24 16 11 C -0.08 -3.32 9.67 22.22 0.21 -3.11 16 12 C -0.20 -10.05 8.76 22.73 0.20 -9.85 16 13 C 0.09 4.55 5.60 -21.29 -0.12 4.43 16 14 C -0.50 -25.60 9.01 23.46 0.21 -25.39 16 15 H 0.08 3.91 7.97 -2.91 -0.02 3.89 16 16 C 0.04 2.05 4.98 85.26 0.42 2.47 16 17 N -0.81 -40.60 11.22 21.83 0.24 -40.35 16 18 Si 0.98 36.12 29.63 68.60 2.03 38.15 16 19 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 22 C -0.25 -11.46 9.80 22.73 0.22 -11.24 16 23 C -0.06 -2.51 9.67 22.22 0.21 -2.29 16 24 C -0.09 -1.73 2.13 -10.68 -0.02 -1.75 16 25 C -0.14 -2.00 5.31 30.69 0.16 -1.84 16 26 C 0.05 0.82 6.84 72.02 0.49 1.31 16 27 O -0.40 -8.54 10.77 -148.98 -1.60 -10.14 16 28 C 0.06 1.30 6.84 72.01 0.49 1.79 16 29 C -0.14 -3.25 5.02 30.68 0.15 -3.10 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.41 10.02 8.25 -92.71 -0.76 9.25 16 36 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 37 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.10 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.10 5.06 6.17 -2.91 -0.02 5.04 16 40 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 41 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 43 H 0.10 1.62 7.92 -2.38 -0.02 1.60 16 44 H 0.07 1.17 7.48 -2.39 -0.02 1.15 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.05 1.42 7.39 -2.39 -0.02 1.41 16 51 H 0.06 1.74 7.56 -2.38 -0.02 1.72 16 Total: -1.00 -64.95 413.03 2.28 -62.67 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.15 Total: 38.34 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 4.83 Total: -33.69 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -2.34 Total: -63.07 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -2.39 Total: -42.40 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -64.95 2.28 -62.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869062485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.848 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds