Wall clock time and date at job start Wed Apr 1 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46777 * 2 1 4 4 C 1.42903 * 113.99754 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.86921 * 21.78812 * 4 3 2 6 6 C 1.53884 * 113.64911 * 250.49489 * 4 3 2 7 7 C 1.53886 * 87.19569 * 220.53376 * 6 4 3 8 8 H 1.09004 * 113.64429 * 270.37829 * 7 6 4 9 9 N 1.46897 * 113.64869 * 139.46880 * 7 6 4 10 10 C 1.46895 * 111.00187 * 104.50771 * 9 7 6 11 11 C 1.50702 * 109.47248 * 180.02562 * 10 9 7 12 12 C 1.38295 * 119.93329 * 89.99310 * 11 10 9 13 13 C 1.38099 * 120.06865 * 180.29798 * 12 11 10 14 14 C 1.38882 * 119.93209 * 359.47412 * 13 12 11 15 15 O 1.35746 * 120.07151 * 180.25101 * 14 13 12 16 16 C 1.34834 * 117.00303 * 174.74178 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05889 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05783 * 16 15 14 19 19 N 1.31551 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47177 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47047 * 119.99691 * 20 18 16 23 23 H 1.48499 * 109.47083 * 240.00124 * 20 18 16 24 24 C 1.38876 * 119.85937 * 0.53013 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72095 * 24 14 13 26 26 C 1.53147 * 86.89973 * 24.96676 * 7 6 4 27 27 C 1.53515 * 114.91074 * 91.38996 * 26 7 6 28 28 C 1.54978 * 103.89145 * 131.95499 * 27 26 7 29 29 C 1.55041 * 102.11920 * 20.85779 * 28 27 26 30 30 O 1.43071 * 115.23505 * 218.02603 * 26 7 6 31 31 H 1.09001 * 109.46629 * 59.99831 * 1 2 3 32 32 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47437 * 300.00549 * 1 2 3 34 34 H 1.08990 * 109.47073 * 239.99797 * 2 1 3 35 35 H 1.09004 * 109.46525 * 119.99639 * 2 1 3 36 36 H 1.08998 * 113.59923 * 105.95263 * 6 4 3 37 37 H 1.08999 * 113.67098 * 335.12275 * 6 4 3 38 38 H 1.00908 * 111.00206 * 228.46520 * 9 7 6 39 39 H 1.08997 * 109.47465 * 60.00116 * 10 9 7 40 40 H 1.08999 * 109.46878 * 299.99928 * 10 9 7 41 41 H 1.08000 * 119.96838 * 0.03084 * 12 11 10 42 42 H 1.08002 * 120.03654 * 179.72624 * 13 12 11 43 43 H 0.96997 * 119.99872 * 180.02562 * 19 18 16 44 44 H 1.07996 * 120.03747 * 179.74440 * 24 14 13 45 45 H 1.07997 * 119.96862 * 180.02562 * 25 24 14 46 46 H 1.09000 * 110.54959 * 250.55467 * 27 26 7 47 47 H 1.09002 * 110.54104 * 13.21275 * 27 26 7 48 48 H 1.08996 * 110.87020 * 139.01918 * 28 27 26 49 49 H 1.09004 * 110.86835 * 262.49465 * 28 27 26 50 50 H 1.08997 * 110.59203 * 81.89242 * 29 28 27 51 51 H 1.09001 * 110.59341 * 204.66866 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9270 0.5639 -0.3719 6 6 4.0085 1.9783 1.3295 7 6 4.9853 2.8200 0.4895 8 1 5.9160 2.3039 0.2538 9 7 5.2010 4.1737 1.0174 10 6 6.5082 4.2786 1.6793 11 6 6.6931 5.6779 2.2073 12 6 6.2777 5.9926 3.4883 13 6 6.4402 7.2755 3.9729 14 6 7.0314 8.2474 3.1763 15 8 7.1971 9.5081 3.6516 16 6 7.8747 10.3729 2.8699 17 1 8.1863 10.0754 1.8796 18 6 8.1714 11.6441 3.3375 19 7 7.7922 12.0062 4.5440 20 14 9.1108 12.8419 2.2548 21 1 9.4197 12.1957 0.9539 22 1 8.2826 14.0522 2.0213 23 1 10.3761 13.2301 2.9281 24 6 7.4474 7.9283 1.8903 25 6 7.2774 6.6449 1.4096 26 6 3.9446 2.7568 -0.6323 27 6 2.9355 3.9137 -0.6441 28 6 2.9257 4.3838 -2.1208 29 6 3.4826 3.1410 -2.8617 30 8 4.4784 2.6205 -1.9526 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 4.4973 1.2060 1.9234 37 1 3.3048 2.5757 1.9092 38 1 5.1082 4.8652 0.2884 39 1 7.2976 4.0532 0.9623 40 1 6.5549 3.5696 2.5058 41 1 5.8218 5.2353 4.1089 42 1 6.1115 7.5218 4.9718 43 1 7.9994 12.8956 4.8710 44 1 7.9038 8.6830 1.2669 45 1 7.6011 6.3960 0.4098 46 1 1.9471 3.5624 -0.3480 47 1 3.2674 4.7174 0.0133 48 1 1.9115 4.6099 -2.4496 49 1 3.5780 5.2464 -2.2580 50 1 2.6934 2.4076 -3.0268 51 1 3.9387 3.4314 -3.8082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877025731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:58 Heat of formation + Delta-G solvation = -65.776279 kcal Electronic energy + Delta-G solvation = -30395.757900 eV Core-core repulsion = 26261.766096 eV Total energy + Delta-G solvation = -4133.991805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07198 -39.03430 -37.93899 -37.15066 -36.21182 -33.70063 -32.24188 -32.18970 -31.19654 -30.14017 -29.16480 -27.66905 -25.67801 -24.56027 -23.52991 -23.12095 -22.64427 -21.97368 -21.90184 -20.39597 -19.02256 -17.96906 -17.28920 -17.13578 -16.76817 -16.45563 -15.92904 -15.66066 -15.12349 -14.76131 -14.74838 -14.47149 -14.07828 -13.77627 -13.64725 -13.61856 -13.41937 -13.24295 -13.02047 -12.68159 -12.51678 -12.42330 -12.22201 -12.19478 -11.93959 -11.73741 -11.58631 -11.47430 -11.46584 -11.29875 -11.22546 -10.82902 -10.76767 -10.62016 -10.59074 -10.50890 -10.40631 -10.08347 -9.49665 -9.31532 -8.83458 -8.41795 -8.14417 -7.16459 -6.44414 -4.03114 2.25118 2.29901 3.12060 3.13930 3.19454 3.22206 3.70045 3.97118 4.14155 4.26964 4.35369 4.50788 4.55598 4.66270 4.73519 4.75433 4.81173 4.84361 4.96254 5.02951 5.11071 5.12518 5.21098 5.30810 5.32116 5.37722 5.46113 5.50503 5.52104 5.55734 5.64962 5.69855 5.75076 5.77335 5.84683 5.90046 5.94937 6.00557 6.03919 6.08762 6.24078 6.45450 6.67463 6.73434 6.92254 6.99527 7.04713 7.11392 7.28591 7.34652 7.44754 7.48201 7.85476 8.00962 9.01455 9.72177 10.73750 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.001981 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.930224 B =14129.280559 C =14712.428423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.368 6.368 4 C 0.053 3.947 5 H 0.090 0.910 6 C -0.138 4.138 7 C 0.074 3.926 8 H 0.079 0.921 9 N -0.665 5.665 10 C 0.117 3.883 11 C -0.185 4.185 12 C -0.051 4.051 13 C -0.195 4.195 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.235 4.235 25 C -0.066 4.066 26 C 0.085 3.915 27 C -0.129 4.129 28 C -0.155 4.155 29 C 0.048 3.952 30 O -0.365 6.365 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.345 0.655 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 -22.708 -12.018 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.287 6.287 4 C -0.006 4.006 5 H 0.108 0.892 6 C -0.177 4.177 7 C -0.037 4.037 8 H 0.097 0.903 9 N -0.298 5.298 10 C -0.011 4.011 11 C -0.186 4.186 12 C -0.070 4.070 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.084 4.084 26 C 0.045 3.955 27 C -0.166 4.166 28 C -0.193 4.193 29 C -0.029 4.029 30 O -0.284 6.284 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.166 0.834 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.941 -22.426 -11.140 27.327 hybrid contribution 1.095 0.416 -1.379 1.809 sum -9.847 -22.010 -12.519 27.168 Atomic orbital electron populations 1.21744 0.93789 1.02154 1.03162 1.22496 0.95539 0.84127 0.99914 1.87921 1.20193 1.26003 1.94598 1.24028 0.81441 0.98100 0.96981 0.89239 1.23407 0.98751 0.99250 0.96302 1.22822 0.96526 0.91811 0.92556 0.90326 1.60837 1.32607 1.02956 1.33403 1.20682 0.88283 0.94798 0.97314 1.19100 1.08792 0.94790 0.95900 1.20460 0.96979 0.94927 0.94625 1.20226 1.08385 0.92340 1.00454 1.19408 0.92610 0.85969 0.91782 1.83979 1.64753 1.15249 1.44198 1.21370 1.34145 0.93047 0.98162 0.89049 1.25288 0.97485 0.97125 0.96675 1.70046 1.43509 1.20057 1.16137 0.85653 0.78897 0.79695 0.79209 1.19129 1.20156 1.20148 1.21114 1.09680 0.97392 0.97205 1.20600 0.97353 0.92698 0.97796 1.23733 0.93966 0.94740 0.83103 1.22521 0.99943 0.97194 0.96963 1.23168 1.02169 0.98515 0.95447 1.23554 0.91384 0.94357 0.93589 1.88791 1.40692 1.83375 1.15532 0.91959 0.91243 0.91728 0.93624 0.93364 0.90877 0.87892 0.83441 0.95271 0.91045 0.87038 0.86590 0.92087 0.85679 0.87953 0.89031 0.88432 0.90242 0.90463 0.92260 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.42 6.51 37.16 0.24 0.66 16 3 O -0.37 -3.66 8.80 -35.23 -0.31 -3.97 16 4 C 0.05 0.52 4.09 -26.19 -0.11 0.42 16 5 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 6 C -0.14 -1.38 7.53 -25.81 -0.19 -1.57 16 7 C 0.07 0.81 3.91 -67.18 -0.26 0.54 16 8 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 9 N -0.67 -8.29 5.60 -107.43 -0.60 -8.89 16 10 C 0.12 1.58 5.67 -4.98 -0.03 1.55 16 11 C -0.18 -3.11 5.40 -104.57 -0.56 -3.67 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 14 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 15 O -0.18 -5.12 9.76 0.05 0.00 -5.12 16 16 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 17 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 20 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 25 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 26 C 0.09 0.91 1.40 -90.20 -0.13 0.79 16 27 C -0.13 -1.34 5.89 -25.42 -0.15 -1.49 16 28 C -0.16 -1.41 7.16 -24.61 -0.18 -1.58 16 29 C 0.05 0.44 7.73 38.24 0.30 0.73 16 30 O -0.37 -4.26 11.28 -35.23 -0.40 -4.66 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.34 4.46 7.24 -39.29 -0.28 4.18 16 39 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 40 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 44 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 45 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.09 0.99 6.69 -51.93 -0.35 0.65 16 47 H 0.10 1.12 5.98 -51.93 -0.31 0.81 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -30.79 410.47 -9.89 -40.67 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.22 Total: 8.10 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.28 Total: -23.26 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.16 Total: -33.52 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.71 Total: -13.76 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.79 -9.89 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877025731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.101 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds