Wall clock time and date at job start Wed Apr 1 2020 05:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99618 * 2 1 4 4 H 1.08999 * 109.57716 * 29.84165 * 3 2 1 5 5 C 1.53287 * 109.63827 * 269.63480 * 3 2 1 6 6 O 1.42901 * 109.46013 * 182.53342 * 5 3 2 7 7 C 1.42907 * 114.09914 * 61.15344 * 6 5 3 8 8 C 1.53082 * 109.41790 * 298.84592 * 7 6 5 9 9 C 1.53176 * 109.52201 * 150.00400 * 3 2 1 10 10 H 1.09005 * 109.54132 * 296.84045 * 9 3 2 11 11 N 1.46501 * 109.54567 * 57.01343 * 9 3 2 12 12 C 1.46497 * 119.99980 * 112.88026 * 11 9 3 13 13 C 1.34776 * 120.00086 * 292.88210 * 11 9 3 14 14 O 1.21277 * 120.00221 * 359.97438 * 13 11 9 15 15 C 1.50703 * 119.99846 * 180.02562 * 13 11 9 16 16 C 1.53006 * 109.46763 * 179.97438 * 15 13 11 17 17 H 1.08993 * 109.47284 * 304.99954 * 16 15 13 18 18 C 1.50704 * 109.46716 * 65.00042 * 16 15 13 19 19 H 1.07999 * 120.00388 * 29.48410 * 18 16 15 20 20 C 1.37875 * 119.99687 * 209.47673 * 18 16 15 21 21 N 1.31514 * 120.00158 * 7.19792 * 20 18 16 22 22 Si 1.86803 * 120.00074 * 187.19542 * 20 18 16 23 23 H 1.48501 * 109.46737 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46899 * 120.00012 * 22 20 18 25 25 H 1.48502 * 109.47257 * 240.00415 * 22 20 18 26 26 C 1.50700 * 109.46735 * 184.99639 * 16 15 13 27 27 C 1.38238 * 120.00088 * 296.69008 * 26 16 15 28 28 C 1.38240 * 119.99307 * 179.74472 * 27 26 16 29 29 C 1.38229 * 120.00255 * 0.53309 * 28 27 26 30 30 C 1.38237 * 119.99971 * 359.74173 * 29 28 27 31 31 C 1.38227 * 120.00143 * 359.97438 * 30 29 28 32 32 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47061 * 299.99806 * 1 2 3 34 34 H 1.08999 * 109.47383 * 60.00345 * 1 2 3 35 35 H 1.09000 * 109.45803 * 62.53171 * 5 3 2 36 36 H 1.09000 * 109.45541 * 302.52384 * 5 3 2 37 37 H 1.08999 * 109.47911 * 178.85864 * 7 6 5 38 38 H 1.09002 * 109.48431 * 58.83970 * 7 6 5 39 39 H 1.09004 * 109.52594 * 297.70436 * 8 7 6 40 40 H 1.09002 * 109.52647 * 177.51337 * 8 7 6 41 41 H 1.08997 * 109.47366 * 267.32121 * 12 11 9 42 42 H 1.09002 * 109.47269 * 27.31920 * 12 11 9 43 43 H 1.08998 * 109.47367 * 147.32008 * 12 11 9 44 44 H 1.08995 * 109.47127 * 59.99843 * 15 13 11 45 45 H 1.08997 * 109.47192 * 299.99625 * 15 13 11 46 46 H 0.97000 * 120.00243 * 179.97438 * 21 20 18 47 47 H 1.07993 * 119.99963 * 0.02562 * 27 26 16 48 48 H 1.08002 * 119.99222 * 180.29908 * 28 27 26 49 49 H 1.07999 * 119.99914 * 179.77400 * 29 28 27 50 50 H 1.08000 * 119.99537 * 180.02562 * 30 29 28 51 51 H 1.08001 * 120.00402 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5110 5 6 2.2281 1.7724 -1.4437 6 8 2.8631 3.0525 -1.4393 7 6 4.1499 3.0634 -0.8179 8 6 4.0100 2.6500 0.6494 9 6 3.3606 1.2646 0.7218 10 1 3.2083 0.9873 1.7649 11 7 4.2322 0.2804 0.0754 12 6 5.4326 0.7223 -0.6389 13 6 3.9298 -1.0315 0.1377 14 8 2.9364 -1.3973 0.7294 15 6 4.8268 -2.0439 -0.5267 16 6 4.2612 -3.4485 -0.3067 17 1 4.1254 -3.6224 0.7606 18 6 2.9333 -3.5708 -1.0087 19 1 2.7374 -2.9912 -1.8987 20 6 1.9683 -4.4227 -0.5147 21 7 2.1491 -5.0205 0.6427 22 14 0.4042 -4.7279 -1.4893 23 1 0.4447 -3.9423 -2.7488 24 1 0.2958 -6.1735 -1.8113 25 1 -0.7709 -4.3109 -0.6827 26 6 5.2199 -4.4689 -0.8641 27 6 5.4957 -4.4908 -2.2185 28 6 6.3792 -5.4236 -2.7288 29 6 6.9783 -6.3414 -1.8865 30 6 6.6981 -6.3231 -0.5330 31 6 5.8192 -5.3867 -0.0217 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.2660 1.8455 -1.9508 36 1 2.8608 1.0546 -1.9658 37 1 4.5723 4.0667 -0.8742 38 1 4.8079 2.3627 -1.3319 39 1 3.3850 3.3730 1.1736 40 1 4.9956 2.6150 1.1136 41 1 5.1946 0.8709 -1.6921 42 1 5.7858 1.6602 -0.2103 43 1 6.2105 -0.0355 -0.5456 44 1 5.8257 -1.9831 -0.0949 45 1 4.8797 -1.8364 -1.5955 46 1 1.4701 -5.6196 0.9905 47 1 5.0245 -3.7763 -2.8771 48 1 6.5984 -5.4375 -3.7863 49 1 7.6657 -7.0724 -2.2858 50 1 7.1665 -7.0399 0.1251 51 1 5.6005 -5.3721 1.0358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882371291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:12 Heat of formation + Delta-G solvation = -84.653812 kcal Electronic energy + Delta-G solvation = -33142.416852 eV Core-core repulsion = 29007.606456 eV Total energy + Delta-G solvation = -4134.810396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.70714 -40.09171 -39.24869 -38.17239 -36.48526 -35.63757 -33.48581 -32.66595 -31.64574 -31.49255 -30.11537 -28.15739 -27.51660 -27.44167 -25.24734 -24.24160 -24.01782 -23.12269 -21.97218 -20.92778 -19.54660 -18.47309 -18.05226 -17.85331 -17.43134 -17.26898 -17.09310 -16.63719 -16.36859 -15.99506 -15.85641 -15.49497 -15.37607 -15.26909 -14.72669 -14.54700 -14.33276 -14.05965 -13.95158 -13.87818 -13.71664 -13.48670 -13.28963 -13.25013 -13.01242 -12.90093 -12.77306 -12.67247 -12.46939 -12.40515 -12.06086 -11.82664 -11.70936 -11.64139 -11.39640 -11.21630 -10.92399 -10.81102 -10.44238 -10.27330 -9.93473 -9.53649 -9.24034 -9.17453 -7.98661 -5.97975 0.78461 0.85060 1.34130 1.35770 1.44733 2.20135 2.31437 2.48755 2.69892 3.15726 3.20366 3.39988 3.69082 3.78478 3.93193 3.98750 4.06820 4.20848 4.27441 4.27850 4.32100 4.36861 4.44290 4.46018 4.48796 4.56124 4.58176 4.66435 4.70414 4.72863 4.75595 4.82038 4.86572 4.89788 4.93500 4.94478 5.01806 5.04031 5.13341 5.26696 5.39534 5.53618 5.71549 5.82462 5.84656 5.86477 5.98819 6.10501 6.22232 6.45121 6.49449 6.50735 6.77146 7.07364 7.62372 7.86794 9.11504 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011003 B = 0.004427 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.257235 B = 6322.637917 C = 7914.361248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.035 3.965 4 H 0.076 0.924 5 C 0.056 3.944 6 O -0.387 6.387 7 C 0.022 3.978 8 C -0.147 4.147 9 C 0.150 3.850 10 H 0.057 0.943 11 N -0.623 5.623 12 C 0.062 3.938 13 C 0.502 3.498 14 O -0.502 6.502 15 C -0.107 4.107 16 C 0.083 3.917 17 H 0.022 0.978 18 C -0.464 4.464 19 H 0.039 0.961 20 C 0.026 3.974 21 N -0.918 5.918 22 Si 0.926 3.074 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.291 1.291 26 C -0.046 4.046 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.147 4.147 30 C -0.128 4.128 31 C -0.144 4.144 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.250 0.750 47 H 0.113 0.887 48 H 0.141 0.859 49 H 0.144 0.856 50 H 0.131 0.869 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 15.298 -3.959 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C -0.025 4.025 4 H 0.093 0.907 5 C -0.022 4.022 6 O -0.306 6.306 7 C -0.053 4.053 8 C -0.184 4.184 9 C 0.046 3.954 10 H 0.075 0.925 11 N -0.361 5.361 12 C -0.079 4.079 13 C 0.289 3.711 14 O -0.374 6.374 15 C -0.147 4.147 16 C 0.064 3.936 17 H 0.041 0.959 18 C -0.503 4.503 19 H 0.057 0.943 20 C -0.172 4.172 21 N -0.558 5.558 22 Si 0.754 3.246 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.218 1.218 26 C -0.047 4.047 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.165 4.165 30 C -0.146 4.146 31 C -0.163 4.163 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.141 0.859 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.077 0.923 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.131 0.869 48 H 0.158 0.842 49 H 0.162 0.838 50 H 0.149 0.851 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.947 14.961 -3.593 17.799 hybrid contribution -1.798 -0.717 0.126 1.939 sum 7.150 14.244 -3.467 16.310 Atomic orbital electron populations 1.22750 0.82459 1.01511 1.00050 1.88629 1.18721 1.25295 1.94666 1.23356 0.95924 0.86259 0.96977 0.90654 1.22826 0.98133 0.85283 0.95957 1.87897 1.33678 1.29535 1.79492 1.23697 0.85112 1.04971 0.91541 1.22448 1.03453 0.93146 0.99390 1.21069 0.88655 0.89913 0.95766 0.92484 1.47995 1.26558 1.05217 1.56339 1.22386 0.86611 1.02651 0.96273 1.20856 0.86251 0.82934 0.81036 1.90792 1.26577 1.78895 1.41124 1.21602 0.97585 0.94899 1.00658 1.17605 0.91314 0.88217 0.96454 0.95929 1.20831 0.98245 1.21808 1.09380 0.94269 1.25368 0.99965 0.96772 0.95076 1.70067 1.35336 1.31565 1.18838 0.85991 0.81620 0.77456 0.79508 1.19134 1.21148 1.21793 1.20613 0.92814 0.97073 0.94181 1.21021 0.98600 1.00215 0.94603 1.21367 0.97126 0.95456 1.00427 1.21258 1.01872 1.00206 0.93181 1.21279 0.98375 0.98435 0.96509 1.21100 0.98631 0.97462 0.99087 0.92472 0.93307 0.93156 0.89252 0.93703 0.85920 0.89573 0.88593 0.87150 0.92319 0.87430 0.90728 0.90004 0.89878 0.94084 0.86894 0.84156 0.83843 0.85076 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 10.83 113.37 1.23 2.24 16 2 O -0.36 -14.37 6.40 -125.21 -0.80 -15.17 16 3 C 0.03 1.05 2.57 30.75 0.08 1.13 16 4 H 0.08 2.05 7.79 -2.39 -0.02 2.03 16 5 C 0.06 1.52 6.32 72.08 0.46 1.98 16 6 O -0.39 -9.03 10.77 -148.98 -1.60 -10.63 16 7 C 0.02 0.35 6.14 72.01 0.44 0.80 16 8 C -0.15 -2.44 5.13 30.68 0.16 -2.28 16 9 C 0.15 4.14 2.77 45.11 0.13 4.27 16 10 H 0.06 1.84 8.11 -2.38 -0.02 1.82 16 11 N -0.62 -18.69 2.38 -821.94 -1.96 -20.65 16 12 C 0.06 1.22 8.07 127.77 1.03 2.25 16 13 C 0.50 20.81 6.87 87.66 0.60 21.41 16 14 O -0.50 -26.27 11.81 20.75 0.25 -26.03 16 15 C -0.11 -4.30 3.53 29.85 0.11 -4.19 16 16 C 0.08 4.18 1.70 -12.28 -0.02 4.16 16 17 H 0.02 1.34 6.93 -2.39 -0.02 1.33 16 18 C -0.46 -26.05 6.37 25.60 0.16 -25.89 16 19 H 0.04 2.22 7.82 -2.91 -0.02 2.20 16 20 C 0.03 1.55 5.45 84.65 0.46 2.01 16 21 N -0.92 -57.53 12.84 21.45 0.28 -57.26 16 22 Si 0.93 47.50 29.54 68.60 2.03 49.53 16 23 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 26 C -0.05 -2.09 4.77 -19.86 -0.09 -2.19 16 27 C -0.13 -4.99 8.86 22.27 0.20 -4.80 16 28 C -0.13 -4.12 10.05 22.27 0.22 -3.89 16 29 C -0.15 -4.60 10.05 22.27 0.22 -4.37 16 30 C -0.13 -4.53 10.05 22.27 0.22 -4.30 16 31 C -0.14 -6.28 9.67 22.27 0.22 -6.06 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.47 8.09 -2.39 -0.02 1.45 16 34 H 0.05 1.47 7.98 -2.39 -0.02 1.45 16 35 H 0.09 2.38 7.98 -2.39 -0.02 2.36 16 36 H 0.04 1.38 7.58 -2.39 -0.02 1.36 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.31 3.60 -2.39 -0.01 1.30 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.33 7.05 -2.39 -0.02 1.31 16 41 H 0.06 1.10 6.77 -2.39 -0.02 1.08 16 42 H 0.11 1.35 4.76 -2.39 -0.01 1.34 16 43 H 0.07 1.42 6.55 -2.39 -0.02 1.41 16 44 H 0.08 2.85 7.40 -2.39 -0.02 2.83 16 45 H 0.08 3.08 7.73 -2.39 -0.02 3.06 16 46 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.11 4.36 7.76 -2.91 -0.02 4.34 16 48 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 49 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 50 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 51 H 0.09 4.28 7.95 -2.91 -0.02 4.25 16 Total: -1.00 -78.23 393.01 4.92 -73.31 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.92 Total: 24.64 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.82 Total: -17.75 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.68 Total: -77.90 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.16 Total: -51.83 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -78.23 4.92 -73.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882371291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.347 kcal (2) G-P(sol) polarization free energy of solvation -78.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds