Wall clock time and date at job start Wed Apr 1 2020 04:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47538 * 2 1 4 4 H 1.09000 * 109.46856 * 304.99935 * 3 2 1 5 5 N 1.46505 * 109.47424 * 64.99796 * 3 2 1 6 6 C 1.34779 * 119.99879 * 275.00617 * 5 3 2 7 7 O 1.21277 * 120.00084 * 359.97438 * 6 5 3 8 8 C 1.50691 * 120.00062 * 179.97438 * 6 5 3 9 9 C 1.50692 * 109.47548 * 179.97438 * 8 6 5 10 10 C 1.38308 * 119.93254 * 269.72813 * 9 8 6 11 11 C 1.38096 * 120.06810 * 179.72206 * 10 9 8 12 12 C 1.38876 * 119.93262 * 0.56956 * 11 10 9 13 13 O 1.35752 * 120.07396 * 179.68179 * 12 11 10 14 14 C 1.34824 * 117.00400 * 174.48484 * 13 12 11 15 15 H 1.08000 * 119.99940 * 5.06239 * 14 13 12 16 16 C 1.38652 * 120.00197 * 185.05695 * 14 13 12 17 17 N 1.31563 * 119.99936 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47345 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47251 * 120.00140 * 18 16 14 21 21 H 1.48496 * 109.47467 * 240.00062 * 18 16 14 22 22 C 1.38882 * 119.86255 * 359.70537 * 12 11 10 23 23 C 1.38102 * 119.92796 * 0.02562 * 22 12 11 24 24 C 1.52998 * 109.47479 * 184.99925 * 3 2 1 25 25 H 1.08998 * 109.57019 * 300.15731 * 24 3 2 26 26 C 1.53179 * 109.52531 * 179.97438 * 24 3 2 27 27 C 1.53175 * 109.10822 * 183.07249 * 26 24 3 28 28 C 1.53275 * 109.06830 * 56.94185 * 27 26 24 29 29 O 1.42904 * 109.45816 * 302.44384 * 28 27 26 30 30 C 1.42905 * 114.09926 * 61.15881 * 29 28 27 31 31 H 1.08994 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46800 * 300.00693 * 1 2 3 33 33 H 1.09003 * 109.46625 * 60.00012 * 1 2 3 34 34 H 1.09004 * 109.46800 * 239.99307 * 2 1 3 35 35 H 1.09003 * 109.46625 * 119.99988 * 2 1 3 36 36 H 0.96995 * 119.99633 * 94.99811 * 5 3 2 37 37 H 1.09002 * 109.47176 * 300.00003 * 8 6 5 38 38 H 1.09004 * 109.47403 * 59.99464 * 8 6 5 39 39 H 1.07999 * 119.96113 * 359.97404 * 10 9 8 40 40 H 1.08004 * 120.03499 * 180.26921 * 11 10 9 41 41 H 0.97003 * 119.99694 * 179.97438 * 17 16 14 42 42 H 1.08001 * 120.03665 * 180.02562 * 22 12 11 43 43 H 1.08003 * 119.96240 * 180.02562 * 23 22 12 44 44 H 1.09001 * 109.54236 * 302.98285 * 26 24 3 45 45 H 1.09002 * 109.54263 * 63.15664 * 26 24 3 46 46 H 1.09000 * 109.51962 * 176.93339 * 27 26 24 47 47 H 1.09001 * 109.52101 * 297.11527 * 27 26 24 48 48 H 1.09007 * 109.46012 * 182.45276 * 28 27 26 49 49 H 1.08993 * 109.47256 * 62.44480 * 28 27 26 50 50 H 1.08997 * 109.48376 * 178.85963 * 30 29 28 51 51 H 1.09004 * 109.47842 * 58.82117 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 7 1.6526 2.0975 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3391 2.6327 0.4341 8 6 0.0364 3.3378 2.6547 9 6 -1.3610 3.8863 2.5229 10 6 -1.5555 5.1764 2.0637 11 6 -2.8350 5.6799 1.9364 12 6 -3.9266 4.8937 2.2814 13 8 -5.1854 5.3881 2.1635 14 6 -6.2026 4.5369 2.4054 15 1 -5.9976 3.5368 2.7580 16 6 -7.5118 4.9453 2.2017 17 7 -7.7616 6.1634 1.7719 18 14 -8.9211 3.7662 2.5376 19 1 -8.3780 2.4673 3.0100 20 1 -9.8086 4.3398 3.5809 21 1 -9.6973 3.5540 1.2895 22 6 -3.7278 3.6007 2.7476 23 6 -2.4460 3.1009 2.8674 24 6 3.5649 1.4442 -0.1257 25 1 4.0011 0.9031 0.7139 26 6 4.0768 2.8879 -0.1265 27 6 5.5950 2.8815 -0.3297 28 6 5.9225 2.1464 -1.6342 29 8 5.3918 0.8207 -1.5797 30 6 3.9709 0.7663 -1.4370 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5140 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2721 2.1231 1.9977 37 1 0.0674 2.6131 3.4683 38 1 0.7278 4.1530 2.8678 39 1 -0.7059 5.7890 1.8005 40 1 -2.9865 6.6859 1.5736 41 1 -8.6775 6.4490 1.6291 42 1 -4.5747 2.9867 3.0163 43 1 -2.2907 2.0953 3.2295 44 1 3.6028 3.4424 -0.9364 45 1 3.8385 3.3598 0.8268 46 1 5.9593 3.9073 -0.3858 47 1 6.0722 2.3698 0.5061 48 1 7.0039 2.1000 -1.7633 49 1 5.4788 2.6812 -2.4739 50 1 3.6464 -0.2741 -1.4240 51 1 3.5015 1.2833 -2.2740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882453744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:46 Heat of formation + Delta-G solvation = -103.653100 kcal Electronic energy + Delta-G solvation = -30425.967053 eV Core-core repulsion = 26290.332786 eV Total energy + Delta-G solvation = -4135.634267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.54530 -39.47837 -38.76355 -36.81049 -36.05802 -33.60158 -32.84829 -32.32931 -31.30947 -31.06391 -30.10518 -27.10277 -26.06995 -25.38598 -24.84599 -23.23366 -21.93046 -21.51243 -20.74037 -20.62678 -19.92863 -17.94095 -17.16802 -17.00970 -16.81048 -16.35840 -15.90627 -15.65941 -15.10223 -14.65947 -14.63225 -14.56134 -14.34848 -14.16925 -13.76215 -13.57070 -13.52618 -13.30050 -13.19854 -12.95361 -12.67371 -12.64138 -12.36923 -12.15234 -11.86794 -11.66029 -11.53908 -11.44346 -11.32564 -11.23016 -10.91400 -10.83458 -10.77678 -10.72532 -10.66774 -10.56296 -10.39177 -9.94691 -9.57845 -9.28163 -9.03042 -8.78682 -8.10687 -7.11799 -6.41186 -3.99571 2.29070 2.30703 2.81996 3.12205 3.16069 3.20331 3.21931 3.45540 4.00078 4.18247 4.30085 4.40620 4.53061 4.59182 4.69597 4.86148 4.89467 4.93387 5.01587 5.10128 5.12472 5.16660 5.26713 5.29567 5.31684 5.36104 5.38082 5.41360 5.43524 5.54458 5.62507 5.69328 5.73486 5.77108 5.77320 5.88874 5.90812 5.92479 6.07635 6.25901 6.40434 6.46237 6.47512 6.74713 6.76609 6.95861 7.09975 7.28381 7.41528 7.48086 7.51869 7.88538 8.04388 8.38602 9.04771 9.75781 10.77096 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.001946 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.770677 B =14382.109830 C =14962.156160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.152 3.848 4 H 0.088 0.912 5 N -0.734 5.734 6 C 0.509 3.491 7 O -0.513 6.513 8 C -0.081 4.081 9 C -0.168 4.168 10 C -0.060 4.060 11 C -0.191 4.191 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.232 4.232 23 C -0.057 4.057 24 C -0.129 4.129 25 H 0.084 0.916 26 C -0.117 4.117 27 C -0.156 4.156 28 C 0.057 3.943 29 O -0.381 6.381 30 C 0.066 3.934 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.051 0.949 50 H 0.099 0.901 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.797 -10.004 -1.826 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.047 3.953 4 H 0.106 0.894 5 N -0.388 5.388 6 C 0.296 3.704 7 O -0.386 6.386 8 C -0.121 4.121 9 C -0.169 4.169 10 C -0.078 4.078 11 C -0.211 4.211 12 C 0.103 3.897 13 O -0.083 6.083 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.251 4.251 23 C -0.075 4.075 24 C -0.148 4.148 25 H 0.102 0.898 26 C -0.155 4.155 27 C -0.194 4.194 28 C -0.019 4.019 29 O -0.300 6.300 30 C -0.011 4.011 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.111 0.889 49 H 0.069 0.931 50 H 0.117 0.883 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 26.012 -9.813 -2.650 27.927 hybrid contribution -0.572 -0.376 0.597 0.908 sum 25.440 -10.189 -2.053 27.481 Atomic orbital electron populations 1.21806 0.94364 1.00589 1.03587 1.22039 0.97533 0.95918 1.01929 1.20905 0.92441 0.93542 0.88366 0.89357 1.46108 1.17242 1.59261 1.16141 1.20960 0.80873 0.78020 0.90540 1.90756 1.50478 1.57088 1.40301 1.20413 0.96433 1.00328 0.94908 1.18615 0.92304 0.95456 1.10530 1.20384 0.95480 0.94502 0.97444 1.20149 0.90678 1.00742 1.09499 1.19378 0.86520 0.91658 0.92174 1.83975 1.10024 1.37756 1.76507 1.21370 0.83700 0.95819 1.45705 0.89051 1.25290 0.97690 0.97089 0.96556 1.70055 1.20738 1.16773 1.42307 0.85648 0.80091 0.79376 0.78316 1.19120 1.20189 1.20160 1.21103 0.97214 0.97219 1.09587 1.20494 0.92004 0.97456 0.97534 1.22068 0.95132 0.97509 1.00120 0.89785 1.21625 0.95053 0.95802 1.02971 1.22229 0.96758 1.01311 0.99058 1.22638 0.99255 0.83613 0.96426 1.87955 1.21067 1.26992 1.93964 1.22662 0.81360 1.01699 0.95356 0.93715 0.92086 0.92085 0.91304 0.91940 0.77058 0.89200 0.89180 0.87495 0.86616 0.92136 0.85642 0.87931 0.91559 0.91085 0.90739 0.91043 0.88939 0.93113 0.88286 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.52 37.16 0.32 -1.42 16 2 C -0.14 -1.18 5.40 -26.73 -0.14 -1.32 16 3 C 0.15 1.31 1.84 -67.93 -0.12 1.19 16 4 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 5 N -0.73 -6.45 4.39 -53.81 -0.24 -6.69 16 6 C 0.51 6.49 6.39 -10.99 -0.07 6.42 16 7 O -0.51 -8.90 13.17 5.56 0.07 -8.82 16 8 C -0.08 -0.97 5.83 -29.04 -0.17 -1.14 16 9 C -0.17 -2.89 4.38 -104.58 -0.46 -3.34 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 11 C -0.19 -4.21 9.99 -39.40 -0.39 -4.60 16 12 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 13 O -0.18 -5.25 9.76 0.06 0.00 -5.25 16 14 C -0.39 -11.16 9.49 30.89 0.29 -10.86 16 15 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 18 Si 0.94 20.98 29.55 -169.99 -5.02 15.95 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.23 -5.23 9.17 -39.39 -0.36 -5.60 16 23 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 24 C -0.13 -0.86 2.02 -90.48 -0.18 -1.04 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 26 C -0.12 -0.76 5.10 -26.55 -0.14 -0.90 16 27 C -0.16 -0.89 6.15 -26.50 -0.16 -1.05 16 28 C 0.06 0.37 6.85 37.30 0.26 0.62 16 29 O -0.38 -3.23 10.77 -35.23 -0.38 -3.61 16 30 C 0.07 0.47 5.71 37.21 0.21 0.69 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.85 5.65 -51.93 -0.29 0.55 16 33 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 34 H 0.07 0.51 6.24 -51.93 -0.32 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.40 2.40 8.40 -40.82 -0.34 2.06 16 37 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 41 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 42 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 43 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.10 0.63 6.47 -51.93 -0.34 0.29 16 51 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -34.12 403.51 -9.08 -43.20 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.11 Total: 4.87 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.25 Total: -20.70 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.52 Total: -31.72 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.31 Total: -17.69 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.12 -9.08 -43.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882453744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.448 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds