Wall clock time and date at job start Wed Apr 1 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45194 * 109.47528 * 2 1 4 4 C 1.34224 * 117.00387 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00253 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47151 * 299.99444 * 6 4 3 8 8 C 1.53000 * 109.47195 * 59.99944 * 6 4 3 9 9 C 1.52996 * 109.47353 * 56.18724 * 8 6 4 10 10 H 1.09003 * 109.82216 * 304.59930 * 9 8 6 11 11 C 1.54384 * 109.83257 * 183.71751 * 9 8 6 12 12 C 1.55455 * 102.18266 * 219.18226 * 11 9 8 13 13 C 1.54944 * 100.99064 * 34.03777 * 12 11 9 14 14 O 1.43233 * 109.83089 * 65.48422 * 9 8 6 15 15 N 1.46901 * 109.46941 * 179.97438 * 6 4 3 16 16 C 1.46906 * 110.99913 * 155.51898 * 15 6 4 17 17 C 1.50699 * 109.47092 * 175.43368 * 16 15 6 18 18 C 1.38639 * 119.74624 * 269.72631 * 17 16 15 19 19 C 1.37615 * 120.24352 * 179.72689 * 18 17 16 20 20 C 1.40717 * 119.74533 * 0.52320 * 19 18 17 21 21 C 1.41402 * 120.24596 * 179.73090 * 20 19 18 22 22 H 1.07997 * 119.99774 * 207.85275 * 21 20 19 23 23 C 1.39944 * 119.99637 * 27.84559 * 21 20 19 24 24 N 1.30821 * 120.00491 * 13.60517 * 23 21 20 25 25 Si 1.86805 * 119.99990 * 193.60645 * 23 21 20 26 26 H 1.48506 * 109.46776 * 59.99714 * 25 23 21 27 27 H 1.48490 * 109.47213 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46776 * 300.00569 * 25 23 21 29 29 C 1.40721 * 119.51318 * 359.75017 * 20 19 18 30 30 C 1.37612 * 119.74318 * 359.97438 * 29 20 19 31 31 H 1.09003 * 109.46925 * 300.00245 * 1 2 3 32 32 H 1.08994 * 109.47526 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47038 * 60.00138 * 1 2 3 34 34 H 1.08996 * 109.46919 * 120.00424 * 2 1 3 35 35 H 1.09003 * 109.46925 * 239.99755 * 2 1 3 36 36 H 1.08994 * 109.47148 * 176.19054 * 8 6 4 37 37 H 1.09000 * 109.46900 * 296.18946 * 8 6 4 38 38 H 1.09002 * 110.84408 * 337.31234 * 11 9 8 39 39 H 1.08992 * 110.85176 * 100.93891 * 11 9 8 40 40 H 1.08999 * 111.05875 * 276.11719 * 12 11 9 41 41 H 1.09000 * 111.14233 * 151.99253 * 12 11 9 42 42 H 1.09004 * 110.30916 * 204.68970 * 13 12 11 43 43 H 1.08995 * 110.39950 * 82.56468 * 13 12 11 44 44 H 1.00899 * 111.00159 * 31.56473 * 15 6 4 45 45 H 1.08997 * 109.46808 * 295.43687 * 16 15 6 46 46 H 1.09001 * 109.47153 * 55.42914 * 16 15 6 47 47 H 1.07999 * 119.87549 * 359.97438 * 18 17 16 48 48 H 1.08002 * 120.12754 * 180.27951 * 19 18 17 49 49 H 0.96999 * 120.00260 * 179.97438 * 24 23 21 50 50 H 1.07993 * 120.12645 * 179.97438 * 29 20 19 51 51 H 1.07998 * 119.87668 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5846 3.4699 -0.8895 8 6 3.4499 3.6835 1.2499 9 6 3.8395 2.8869 2.4967 10 1 3.4394 1.8752 2.4288 11 6 3.2871 3.5849 3.7580 12 6 4.4507 3.3991 4.7720 13 6 5.6788 3.4842 3.8311 14 8 5.2660 2.8383 2.6162 15 7 5.3878 2.8603 -0.0001 16 6 5.9789 4.0794 -0.5680 17 6 7.4797 4.0124 -0.4492 18 6 8.1036 4.5189 0.6805 19 6 9.4730 4.4580 0.8022 20 6 10.2411 3.8888 -0.2304 21 6 11.6493 3.8258 -0.1190 22 1 12.2619 3.8275 -1.0084 23 6 12.2490 3.7616 1.1438 24 7 11.5243 3.4928 2.1993 25 14 14.0844 4.0596 1.3224 26 1 14.4137 5.4242 0.8377 27 1 14.4695 3.9348 2.7510 28 1 14.8292 3.0563 0.5199 29 6 9.5974 3.3830 -1.3750 30 6 8.2263 3.4494 -1.4727 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 3.9200 4.6663 1.2851 37 1 2.3666 3.8000 1.2170 38 1 3.1042 4.6425 3.5674 39 1 2.3816 3.0907 4.1098 40 1 4.3949 2.4251 5.2580 41 1 4.4631 4.2031 5.5079 42 1 6.5279 2.9594 4.2689 43 1 5.9374 4.5251 3.6371 44 1 5.7068 2.0400 -0.4936 45 1 5.7009 4.1626 -1.6186 46 1 5.6099 4.9493 -0.0246 47 1 7.5124 4.9593 1.4698 48 1 9.9568 4.8491 1.6851 49 1 11.9401 3.4479 3.0745 50 1 10.1771 2.9444 -2.1736 51 1 7.7302 3.0622 -2.3503 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886966402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:09 Heat of formation + Delta-G solvation = -115.508543 kcal Electronic energy + Delta-G solvation = -31440.767484 eV Core-core repulsion = 27304.619127 eV Total energy + Delta-G solvation = -4136.148357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.72507 -39.12107 -37.72305 -36.88367 -35.62987 -33.70051 -32.27898 -31.87089 -31.49539 -29.82359 -29.14680 -27.82079 -25.88426 -24.72756 -23.31252 -22.47554 -21.66334 -21.35837 -20.84699 -19.97323 -19.64093 -17.56942 -17.18154 -17.05426 -16.76868 -16.40139 -15.72052 -15.22245 -14.92242 -14.53783 -14.20554 -14.11434 -13.90842 -13.72263 -13.41241 -13.25985 -13.17693 -13.10284 -12.91054 -12.43795 -12.28102 -12.04934 -11.87671 -11.81836 -11.77431 -11.51643 -11.47488 -11.44672 -11.01823 -10.89963 -10.85388 -10.83261 -10.68566 -10.66751 -10.43206 -10.29081 -10.22407 -9.50170 -9.24172 -9.07706 -9.05374 -7.88324 -7.31256 -7.15392 -6.62106 -4.25990 2.22517 2.50826 2.87219 3.11762 3.14951 3.19636 3.26790 4.01138 4.11339 4.47987 4.53123 4.57888 4.68226 4.71587 4.77977 4.84432 4.95839 5.03281 5.12651 5.22485 5.30886 5.42142 5.46391 5.50358 5.58505 5.67484 5.68054 5.76296 5.78482 5.81400 5.85139 5.91962 5.99532 6.12513 6.15830 6.26402 6.31849 6.38532 6.46506 6.55729 7.06472 7.18199 7.38648 7.41683 7.46970 7.53108 7.72708 7.75037 7.86127 7.99614 8.16418 8.26323 8.41928 8.76003 9.00595 9.08951 10.32208 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002763 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.389244 B =10133.183645 C =11270.258006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.460 3.540 5 O -0.490 6.490 6 C 0.101 3.899 7 H 0.072 0.928 8 C -0.115 4.115 9 C 0.088 3.912 10 H 0.061 0.939 11 C -0.151 4.151 12 C -0.157 4.157 13 C 0.047 3.953 14 O -0.322 6.322 15 N -0.644 5.644 16 C 0.130 3.870 17 C -0.200 4.200 18 C -0.071 4.071 19 C -0.163 4.163 20 C 0.113 3.887 21 C -0.466 4.466 22 H 0.074 0.926 23 C 0.075 3.925 24 N -0.797 5.797 25 Si 0.907 3.093 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.267 1.267 29 C -0.224 4.224 30 C -0.088 4.088 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.351 0.649 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.115 0.885 49 H 0.279 0.721 50 H 0.089 0.911 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.881 -0.630 2.191 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.278 6.278 4 C 0.302 3.698 5 O -0.375 6.375 6 C -0.010 4.010 7 H 0.089 0.911 8 C -0.153 4.153 9 C 0.029 3.971 10 H 0.079 0.921 11 C -0.189 4.189 12 C -0.195 4.195 13 C -0.030 4.030 14 O -0.240 6.240 15 N -0.279 5.279 16 C 0.002 3.998 17 C -0.202 4.202 18 C -0.090 4.090 19 C -0.182 4.182 20 C 0.110 3.890 21 C -0.497 4.497 22 H 0.092 0.908 23 C -0.142 4.142 24 N -0.423 5.423 25 Si 0.732 3.268 26 H -0.190 1.190 27 H -0.204 1.204 28 H -0.192 1.192 29 C -0.244 4.244 30 C -0.106 4.106 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.172 0.828 45 H 0.033 0.967 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.133 0.867 49 H 0.090 0.910 50 H 0.107 0.893 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.468 -0.899 2.936 20.697 hybrid contribution 0.533 -0.270 -0.556 0.816 sum -19.936 -1.169 2.380 20.111 Atomic orbital electron populations 1.21795 0.92710 1.02862 1.03435 1.22995 0.95213 0.80547 1.02633 1.86496 1.24803 1.32120 1.84425 1.23896 0.80437 0.93082 0.72418 1.90695 1.60100 1.42659 1.44046 1.21195 0.91790 0.88516 0.99543 0.91060 1.22046 1.00296 0.99897 0.93106 1.22512 0.83865 0.97418 0.93279 0.92070 1.23207 0.98777 1.01528 0.95350 1.23312 0.95361 1.02443 0.98391 1.23351 0.96523 0.98099 0.84998 1.88905 1.18110 1.77692 1.39268 1.60640 1.00423 1.06100 1.60778 1.20611 0.93225 0.91292 0.94653 1.18799 0.91762 1.11936 0.97667 1.20434 0.94461 0.99003 0.95112 1.21288 0.92346 1.03662 1.00949 1.17613 0.93273 0.87454 0.90620 1.19524 0.91985 1.45421 0.92731 0.90774 1.25863 1.00345 0.92457 0.95522 1.69815 1.37827 1.34674 0.99991 0.86397 0.82669 0.79955 0.77794 1.18984 1.20440 1.19157 1.20946 0.93355 1.09045 1.01040 1.20355 0.94148 0.99440 0.96693 0.91496 0.90354 0.91543 0.91265 0.91355 0.89745 0.90315 0.90544 0.90732 0.90875 0.90474 0.89989 0.92598 0.82770 0.96660 0.91921 0.89568 0.86676 0.91047 0.89290 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.30 10.15 -39.24 -0.40 -4.70 16 4 C 0.46 6.60 5.77 36.01 0.21 6.81 16 5 O -0.49 -8.63 15.41 -18.75 -0.29 -8.92 16 6 C 0.10 1.38 2.83 -68.86 -0.19 1.18 16 7 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 8 C -0.12 -1.37 4.70 -26.73 -0.13 -1.49 16 9 C 0.09 1.16 3.30 -26.01 -0.09 1.08 16 10 H 0.06 0.87 6.96 -51.93 -0.36 0.51 16 11 C -0.15 -1.55 6.56 -24.70 -0.16 -1.71 16 12 C -0.16 -1.72 7.16 -24.40 -0.17 -1.89 16 13 C 0.05 0.69 7.78 38.18 0.30 0.98 16 14 O -0.32 -5.47 9.34 -35.23 -0.33 -5.80 16 15 N -0.64 -11.03 4.44 -109.22 -0.48 -11.52 16 16 C 0.13 2.27 5.58 -4.97 -0.03 2.24 16 17 C -0.20 -4.38 5.46 -104.33 -0.57 -4.95 16 18 C -0.07 -1.68 9.67 -39.66 -0.38 -2.06 16 19 C -0.16 -4.31 8.67 -38.87 -0.34 -4.65 16 20 C 0.11 3.09 5.55 -106.82 -0.59 2.49 16 21 C -0.47 -12.74 9.06 -37.74 -0.34 -13.08 16 22 H 0.07 1.95 7.88 -52.49 -0.41 1.53 16 23 C 0.07 1.94 5.20 -17.34 -0.09 1.85 16 24 N -0.80 -21.26 10.94 55.55 0.61 -20.66 16 25 Si 0.91 19.24 29.58 -169.99 -5.03 14.21 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 27 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 28 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 29 C -0.22 -5.68 9.80 -38.87 -0.38 -6.06 16 30 C -0.09 -2.00 9.67 -39.66 -0.38 -2.39 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.08 1.02 7.28 -51.93 -0.38 0.64 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.35 6.66 7.51 -39.29 -0.30 6.36 16 45 H 0.02 0.25 8.08 -51.93 -0.42 -0.17 16 46 H 0.06 1.03 7.19 -51.93 -0.37 0.66 16 47 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 48 H 0.12 3.15 6.26 -52.49 -0.33 2.82 16 49 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 50 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 51 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 413.26 15.07 6.23 6.23 Total: -1.00 -30.58 413.26 -10.86 -41.45 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.44 Total: 11.13 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -2.73 Total: -21.42 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.12 Total: -32.18 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.02 Total: -19.42 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.58 -10.86 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886966402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.062 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds