Wall clock time and date at job start Wed Apr 1 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00345 * 2 1 4 4 C 1.52995 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46753 * 175.86060 * 4 3 2 6 6 N 1.46504 * 109.47246 * 295.85667 * 4 3 2 7 7 C 1.34774 * 120.00036 * 275.00526 * 6 4 3 8 8 O 1.21287 * 120.00188 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99804 * 179.97438 * 7 6 4 10 10 C 1.50709 * 109.47194 * 179.97438 * 9 7 6 11 11 C 1.37638 * 120.12800 * 264.72922 * 10 9 7 12 12 C 1.38615 * 120.24371 * 179.69959 * 11 10 9 13 13 C 1.38652 * 120.50177 * 0.59891 * 12 11 10 14 14 C 1.37599 * 120.25193 * 359.67787 * 13 12 11 15 15 C 1.40700 * 120.12265 * 85.00335 * 10 9 7 16 16 C 1.41386 * 120.24900 * 0.02562 * 15 10 9 17 17 H 1.08005 * 119.99894 * 333.22679 * 16 15 10 18 18 C 1.39943 * 120.00044 * 153.22320 * 16 15 10 19 19 N 1.30818 * 120.00154 * 346.84472 * 18 16 15 20 20 Si 1.86802 * 119.99934 * 166.84431 * 18 16 15 21 21 H 1.48498 * 109.47270 * 89.99993 * 20 18 16 22 22 H 1.48504 * 109.47299 * 209.99846 * 20 18 16 23 23 H 1.48505 * 109.47195 * 329.99973 * 20 18 16 24 24 C 1.52995 * 109.47559 * 55.86119 * 4 3 2 25 25 H 1.09006 * 109.52107 * 302.92698 * 24 4 3 26 26 C 1.53176 * 109.52375 * 63.11030 * 24 4 3 27 27 C 1.53180 * 109.03521 * 176.88520 * 26 24 4 28 28 C 1.53089 * 109.16398 * 303.02367 * 27 26 24 29 29 O 1.42896 * 109.41760 * 57.60858 * 28 27 26 30 30 C 1.42902 * 114.09908 * 298.84251 * 29 28 27 31 31 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46469 * 299.99477 * 1 2 3 33 33 H 1.08999 * 109.46887 * 59.99508 * 1 2 3 34 34 H 1.09002 * 109.46695 * 60.00323 * 3 2 1 35 35 H 1.09004 * 109.46743 * 300.00204 * 3 2 1 36 36 H 0.96997 * 119.99607 * 94.72598 * 6 4 3 37 37 H 1.08998 * 109.47675 * 300.00264 * 9 7 6 38 38 H 1.09002 * 109.46995 * 60.00482 * 9 7 6 39 39 H 1.08001 * 119.87545 * 359.97438 * 11 10 9 40 40 H 1.07994 * 119.74474 * 180.30329 * 12 11 10 41 41 H 1.08005 * 119.87627 * 179.70425 * 13 12 11 42 42 H 1.07992 * 120.12829 * 180.02562 * 14 13 12 43 43 H 0.96996 * 119.99986 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.54710 * 296.76082 * 26 24 4 45 45 H 1.09004 * 109.53658 * 57.02520 * 26 24 4 46 46 H 1.08998 * 109.52017 * 183.11464 * 27 26 24 47 47 H 1.08997 * 109.51933 * 62.93199 * 27 26 24 48 48 H 1.09006 * 109.48213 * 297.62149 * 28 27 26 49 49 H 1.09007 * 109.48593 * 177.59795 * 28 27 26 50 50 H 1.08996 * 109.47581 * 301.17561 * 30 29 28 51 51 H 1.09000 * 109.48853 * 181.14492 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1777 -0.0748 6 7 3.9753 0.5452 1.2420 7 6 4.1636 1.2869 2.3514 8 8 3.9694 2.4838 2.3210 9 6 4.6154 0.6292 3.6298 10 6 4.7499 1.6709 4.7105 11 6 5.9737 2.2462 4.9670 12 6 6.0989 3.2091 5.9563 13 6 4.9984 3.5949 6.7062 14 6 3.7664 3.0291 6.4709 15 6 3.6260 2.0549 5.4649 16 6 2.3652 1.4663 5.2146 17 1 2.1361 1.0770 4.2335 18 6 1.4140 1.3879 6.2381 19 7 1.7660 1.6159 7.4772 20 14 -0.3585 0.9576 5.8348 21 1 -0.5364 -0.5155 5.8951 22 1 -1.2616 1.6059 6.8195 23 1 -0.6868 1.4403 4.4693 24 6 3.9796 0.3375 -1.1948 25 1 3.4959 -0.6383 -1.1492 26 6 3.5887 1.0435 -2.4968 27 6 4.1066 0.2253 -3.6837 28 6 5.6215 0.0496 -3.5502 29 8 5.9182 -0.5847 -2.3046 30 6 5.4994 0.1574 -1.1574 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.6888 1.8463 0.8901 35 1 1.6887 1.8464 -0.8900 36 1 4.1270 -0.4125 1.2673 37 1 3.8814 -0.1173 3.9335 38 1 5.5794 0.1464 3.4690 39 1 6.8387 1.9495 4.3924 40 1 7.0620 3.6587 6.1475 41 1 5.1084 4.3427 7.4777 42 1 2.9104 3.3314 7.0559 43 1 1.1068 1.5612 8.1866 44 1 2.5033 1.1250 -2.5558 45 1 4.0321 2.0390 -2.5190 46 1 3.8810 0.7486 -4.6129 47 1 3.6255 -0.7527 -3.6895 48 1 6.1052 1.0259 -3.5852 49 1 5.9895 -0.5680 -4.3695 50 1 5.9814 1.1350 -1.1612 51 1 5.7793 -0.3825 -0.2529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894831739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:13 Heat of formation + Delta-G solvation = -125.317747 kcal Electronic energy + Delta-G solvation = -31760.039986 eV Core-core repulsion = 27623.466269 eV Total energy + Delta-G solvation = -4136.573716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.19726 -38.96084 -37.86131 -37.16364 -35.26533 -33.57708 -33.38522 -31.86364 -31.07207 -29.41036 -28.98329 -26.86360 -26.04407 -25.35888 -24.84365 -23.79986 -21.81483 -20.87871 -20.31482 -20.21396 -19.19885 -17.18106 -16.88082 -16.59646 -16.31907 -15.95881 -15.76289 -15.51144 -15.29420 -15.17225 -14.77187 -14.42991 -14.39980 -14.07318 -13.62756 -13.31897 -13.20091 -13.06429 -12.87962 -12.58676 -12.47989 -12.22004 -11.84736 -11.69212 -11.54161 -11.47893 -11.36631 -11.13975 -11.08574 -10.96382 -10.93720 -10.86933 -10.64511 -10.44292 -10.36236 -9.66326 -9.61076 -9.45566 -9.32893 -9.15542 -9.10066 -8.67756 -7.26546 -7.23400 -6.67485 -4.31072 2.81256 3.00528 3.07180 3.11631 3.29106 3.35174 3.58551 3.67846 3.88234 3.95872 4.45961 4.59497 4.65368 4.67619 4.71529 4.93428 5.10799 5.18411 5.23107 5.28655 5.36921 5.39507 5.43399 5.46397 5.52851 5.58994 5.64579 5.67954 5.74786 5.80956 5.83676 5.88909 5.96742 6.08074 6.15801 6.26159 6.32750 6.48875 6.55233 6.81237 6.85038 7.00682 7.13077 7.15505 7.34592 7.47127 7.68807 7.93634 8.00930 8.12886 8.17385 8.36093 8.69666 8.89815 8.96400 9.05971 10.25915 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.003486 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.211518 B = 8029.205202 C = 9983.917163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.047 3.953 4 C 0.161 3.839 5 H 0.098 0.902 6 N -0.735 5.735 7 C 0.517 3.483 8 O -0.524 6.524 9 C -0.072 4.072 10 C -0.177 4.177 11 C -0.083 4.083 12 C -0.238 4.238 13 C -0.109 4.109 14 C -0.158 4.158 15 C 0.128 3.872 16 C -0.454 4.454 17 H 0.073 0.927 18 C 0.076 3.924 19 N -0.799 5.799 20 Si 0.903 3.097 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.125 4.125 25 H 0.095 0.905 26 C -0.115 4.115 27 C -0.153 4.153 28 C 0.058 3.942 29 O -0.382 6.382 30 C 0.067 3.933 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.399 0.601 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.278 0.722 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.091 0.909 50 H 0.051 0.949 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -4.747 -18.464 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.031 4.031 4 C 0.055 3.945 5 H 0.116 0.884 6 N -0.389 5.389 7 C 0.305 3.695 8 O -0.398 6.398 9 C -0.111 4.111 10 C -0.179 4.179 11 C -0.101 4.101 12 C -0.257 4.257 13 C -0.127 4.127 14 C -0.177 4.177 15 C 0.125 3.875 16 C -0.484 4.484 17 H 0.091 0.909 18 C -0.141 4.141 19 N -0.426 5.426 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.144 4.144 25 H 0.114 0.886 26 C -0.153 4.153 27 C -0.191 4.191 28 C -0.018 4.018 29 O -0.300 6.300 30 C -0.010 4.010 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.109 0.891 50 H 0.069 0.931 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.584 -4.194 -18.205 18.691 hybrid contribution -1.308 -0.069 -0.061 1.312 sum -0.724 -4.263 -18.265 18.770 Atomic orbital electron populations 1.22710 0.81405 1.02467 0.99892 1.87831 1.19315 1.27659 1.95404 1.23038 0.94102 0.85062 1.00856 1.20842 0.91865 0.97868 0.83932 0.88426 1.46133 1.71267 1.11554 1.09915 1.21241 0.76078 0.87569 0.84593 1.90673 1.49595 1.15183 1.84339 1.20271 1.01395 0.98672 0.90791 1.19066 0.93659 1.02971 1.02212 1.20300 0.95489 0.97031 0.97319 1.20310 0.97263 1.05164 1.02979 1.20683 0.94042 0.99426 0.98585 1.21350 0.96258 0.98378 1.01728 1.17340 0.91430 0.88945 0.89742 1.19461 0.97477 1.34378 0.97131 0.90870 1.25859 1.00554 0.93199 0.94484 1.69802 1.35667 1.36947 1.00145 0.86403 0.82156 0.79199 0.79494 1.19512 1.20154 1.18767 1.21978 0.97105 1.01228 0.94118 0.88649 1.21622 1.01589 0.98714 0.93403 1.22164 0.96962 1.01350 0.98627 1.22577 0.94594 0.97912 0.86763 1.87944 1.80917 1.47319 1.13847 1.22635 0.92950 0.96709 0.88720 0.89832 0.93930 0.94526 0.92058 0.92957 0.76725 0.88548 0.90613 0.89772 0.89720 0.89641 0.86328 0.91070 0.91052 0.91680 0.90960 0.90939 0.93293 0.89108 0.93090 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.13 9.74 -35.23 -0.34 -5.47 16 3 C 0.05 0.64 5.34 37.16 0.20 0.83 16 4 C 0.16 2.07 1.95 -67.93 -0.13 1.94 16 5 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 6 N -0.73 -10.58 4.31 -53.81 -0.23 -10.81 16 7 C 0.52 9.83 7.42 -10.99 -0.08 9.75 16 8 O -0.52 -12.16 15.70 5.55 0.09 -12.07 16 9 C -0.07 -1.40 5.18 -29.03 -0.15 -1.55 16 10 C -0.18 -4.27 4.43 -103.91 -0.46 -4.73 16 11 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 12 C -0.24 -5.58 10.05 -39.29 -0.39 -5.98 16 13 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 14 C -0.16 -4.25 8.68 -38.87 -0.34 -4.59 16 15 C 0.13 3.43 5.56 -106.83 -0.59 2.84 16 16 C -0.45 -12.02 8.13 -37.75 -0.31 -12.33 16 17 H 0.07 1.90 6.69 -52.48 -0.35 1.54 16 18 C 0.08 1.91 5.22 -17.35 -0.09 1.82 16 19 N -0.80 -20.83 10.84 55.55 0.60 -20.23 16 20 Si 0.90 19.02 29.58 -169.99 -5.03 13.99 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.13 -1.30 1.87 -90.48 -0.17 -1.47 16 25 H 0.10 1.08 7.49 -51.93 -0.39 0.69 16 26 C -0.12 -1.02 4.94 -26.55 -0.13 -1.16 16 27 C -0.15 -1.19 6.14 -26.59 -0.16 -1.36 16 28 C 0.06 0.49 6.84 37.20 0.25 0.75 16 29 O -0.38 -4.28 10.77 -35.23 -0.38 -4.66 16 30 C 0.07 0.71 5.89 37.20 0.22 0.93 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.59 6.80 -51.93 -0.35 0.24 16 36 H 0.40 4.86 8.24 -40.82 -0.34 4.53 16 37 H 0.10 1.89 7.08 -51.93 -0.37 1.52 16 38 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.29 6.16 -52.49 -0.32 2.97 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.07 0.63 6.78 -51.93 -0.35 0.27 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.10 1.02 7.36 -51.93 -0.38 0.64 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -31.23 406.71 -9.47 -40.70 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.30 Total: 10.63 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.01 Total: -18.22 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.37 Total: -31.04 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.64 Total: -22.20 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.23 -9.47 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894831739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.615 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds