Wall clock time and date at job start Wed Apr 1 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00345 * 2 1 4 4 C 1.52995 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46753 * 175.86060 * 4 3 2 6 6 N 1.46504 * 109.47246 * 295.85667 * 4 3 2 7 7 C 1.34774 * 120.00036 * 275.00526 * 6 4 3 8 8 O 1.21287 * 120.00188 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99804 * 179.97438 * 7 6 4 10 10 C 1.50709 * 109.47194 * 179.97438 * 9 7 6 11 11 C 1.37638 * 120.12800 * 264.72922 * 10 9 7 12 12 C 1.38615 * 120.24371 * 179.69959 * 11 10 9 13 13 C 1.38652 * 120.50177 * 0.59891 * 12 11 10 14 14 C 1.37599 * 120.25193 * 359.67787 * 13 12 11 15 15 C 1.40700 * 120.12265 * 85.00335 * 10 9 7 16 16 C 1.41386 * 120.24900 * 0.02562 * 15 10 9 17 17 H 1.08005 * 119.99894 * 333.22679 * 16 15 10 18 18 C 1.39943 * 120.00044 * 153.22320 * 16 15 10 19 19 N 1.30818 * 120.00154 * 346.84472 * 18 16 15 20 20 Si 1.86802 * 119.99934 * 166.84431 * 18 16 15 21 21 H 1.48498 * 109.47270 * 89.99993 * 20 18 16 22 22 H 1.48504 * 109.47299 * 209.99846 * 20 18 16 23 23 H 1.48505 * 109.47195 * 329.99973 * 20 18 16 24 24 C 1.52995 * 109.47559 * 55.86119 * 4 3 2 25 25 H 1.09006 * 109.52107 * 302.92698 * 24 4 3 26 26 C 1.53176 * 109.52375 * 63.11030 * 24 4 3 27 27 C 1.53180 * 109.03521 * 176.88520 * 26 24 4 28 28 C 1.53089 * 109.16398 * 303.02367 * 27 26 24 29 29 O 1.42896 * 109.41760 * 57.60858 * 28 27 26 30 30 C 1.42902 * 114.09908 * 298.84251 * 29 28 27 31 31 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46469 * 299.99477 * 1 2 3 33 33 H 1.08999 * 109.46887 * 59.99508 * 1 2 3 34 34 H 1.09002 * 109.46695 * 60.00323 * 3 2 1 35 35 H 1.09004 * 109.46743 * 300.00204 * 3 2 1 36 36 H 0.96997 * 119.99607 * 94.72598 * 6 4 3 37 37 H 1.08998 * 109.47675 * 300.00264 * 9 7 6 38 38 H 1.09002 * 109.46995 * 60.00482 * 9 7 6 39 39 H 1.08001 * 119.87545 * 359.97438 * 11 10 9 40 40 H 1.07994 * 119.74474 * 180.30329 * 12 11 10 41 41 H 1.08005 * 119.87627 * 179.70425 * 13 12 11 42 42 H 1.07992 * 120.12829 * 180.02562 * 14 13 12 43 43 H 0.96996 * 119.99986 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.54710 * 296.76082 * 26 24 4 45 45 H 1.09004 * 109.53658 * 57.02520 * 26 24 4 46 46 H 1.08998 * 109.52017 * 183.11464 * 27 26 24 47 47 H 1.08997 * 109.51933 * 62.93199 * 27 26 24 48 48 H 1.09006 * 109.48213 * 297.62149 * 28 27 26 49 49 H 1.09007 * 109.48593 * 177.59795 * 28 27 26 50 50 H 1.08996 * 109.47581 * 301.17561 * 30 29 28 51 51 H 1.09000 * 109.48853 * 181.14492 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1777 -0.0748 6 7 3.9753 0.5452 1.2420 7 6 4.1636 1.2869 2.3514 8 8 3.9694 2.4838 2.3210 9 6 4.6154 0.6292 3.6298 10 6 4.7499 1.6709 4.7105 11 6 5.9737 2.2462 4.9670 12 6 6.0989 3.2091 5.9563 13 6 4.9984 3.5949 6.7062 14 6 3.7664 3.0291 6.4709 15 6 3.6260 2.0549 5.4649 16 6 2.3652 1.4663 5.2146 17 1 2.1361 1.0770 4.2335 18 6 1.4140 1.3879 6.2381 19 7 1.7660 1.6159 7.4772 20 14 -0.3585 0.9576 5.8348 21 1 -0.5364 -0.5155 5.8951 22 1 -1.2616 1.6059 6.8195 23 1 -0.6868 1.4403 4.4693 24 6 3.9796 0.3375 -1.1948 25 1 3.4959 -0.6383 -1.1492 26 6 3.5887 1.0435 -2.4968 27 6 4.1066 0.2253 -3.6837 28 6 5.6215 0.0496 -3.5502 29 8 5.9182 -0.5847 -2.3046 30 6 5.4994 0.1574 -1.1574 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.6888 1.8463 0.8901 35 1 1.6887 1.8464 -0.8900 36 1 4.1270 -0.4125 1.2673 37 1 3.8814 -0.1173 3.9335 38 1 5.5794 0.1464 3.4690 39 1 6.8387 1.9495 4.3924 40 1 7.0620 3.6587 6.1475 41 1 5.1084 4.3427 7.4777 42 1 2.9104 3.3314 7.0559 43 1 1.1068 1.5612 8.1866 44 1 2.5033 1.1250 -2.5558 45 1 4.0321 2.0390 -2.5190 46 1 3.8810 0.7486 -4.6129 47 1 3.6255 -0.7527 -3.6895 48 1 6.1052 1.0259 -3.5852 49 1 5.9895 -0.5680 -4.3695 50 1 5.9814 1.1350 -1.1612 51 1 5.7793 -0.3825 -0.2529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894831739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:12 Heat of formation + Delta-G solvation = -144.264714 kcal Electronic energy + Delta-G solvation = -31760.861588 eV Core-core repulsion = 27623.466269 eV Total energy + Delta-G solvation = -4137.395319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.30452 -40.21090 -39.19695 -38.64403 -36.38118 -35.48897 -34.34790 -33.45455 -32.16895 -31.31540 -30.04674 -28.44214 -27.14695 -26.79066 -26.01551 -24.69159 -22.96032 -22.77156 -21.65200 -21.31927 -20.65626 -19.06481 -18.06731 -17.71883 -17.31434 -17.24172 -17.03236 -16.70721 -16.44995 -16.31880 -16.08735 -15.88488 -15.55492 -15.36919 -14.93996 -14.81674 -14.66158 -14.38134 -14.01672 -13.71064 -13.53680 -13.48731 -13.36355 -13.20922 -12.88508 -12.78422 -12.75139 -12.60272 -12.49909 -12.37574 -12.13411 -12.07703 -11.90594 -11.67053 -11.32110 -11.22163 -11.19872 -11.04767 -10.77950 -10.59683 -10.41671 -9.96018 -9.19865 -9.14199 -8.56869 -6.29578 0.99903 1.14733 1.32830 1.44512 1.51306 1.85437 2.18670 2.31869 2.79651 2.84413 2.92745 3.58646 3.76655 3.77545 3.85379 4.02163 4.11891 4.19944 4.26461 4.27546 4.37099 4.42420 4.42708 4.47670 4.51851 4.56861 4.62391 4.63167 4.66849 4.72797 4.76192 4.80778 4.83217 4.83600 4.95523 5.04903 5.08669 5.14515 5.20846 5.22691 5.39232 5.41289 5.56310 5.58614 5.79000 6.05216 6.13493 6.18448 6.22881 6.26640 6.43510 6.68406 6.76919 7.00664 7.12580 7.46525 8.38676 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.003486 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.211518 B = 8029.205202 C = 9983.917163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.052 3.948 4 C 0.161 3.839 5 H 0.086 0.914 6 N -0.716 5.716 7 C 0.522 3.478 8 O -0.572 6.572 9 C -0.072 4.072 10 C -0.182 4.182 11 C -0.093 4.093 12 C -0.240 4.240 13 C -0.119 4.119 14 C -0.192 4.192 15 C 0.095 3.905 16 C -0.480 4.480 17 H 0.068 0.932 18 C 0.035 3.965 19 N -0.830 5.830 20 Si 0.969 3.031 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.110 4.110 25 H 0.091 0.909 26 C -0.116 4.116 27 C -0.147 4.147 28 C 0.050 3.950 29 O -0.398 6.398 30 C 0.068 3.932 31 H 0.101 0.899 32 H 0.024 0.976 33 H 0.058 0.942 34 H 0.022 0.978 35 H 0.077 0.923 36 H 0.412 0.588 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.285 0.715 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.107 0.893 50 H 0.048 0.952 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -5.971 -20.854 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.026 4.026 4 C 0.056 3.944 5 H 0.104 0.896 6 N -0.369 5.369 7 C 0.310 3.690 8 O -0.451 6.451 9 C -0.111 4.111 10 C -0.184 4.184 11 C -0.111 4.111 12 C -0.259 4.259 13 C -0.138 4.138 14 C -0.212 4.212 15 C 0.093 3.907 16 C -0.510 4.510 17 H 0.086 0.914 18 C -0.179 4.179 19 N -0.457 5.457 20 Si 0.791 3.209 21 H -0.180 1.180 22 H -0.192 1.192 23 H -0.193 1.193 24 C -0.129 4.129 25 H 0.109 0.891 26 C -0.154 4.154 27 C -0.185 4.185 28 C -0.026 4.026 29 O -0.317 6.317 30 C -0.009 4.009 31 H 0.120 0.880 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.095 0.905 36 H 0.248 0.752 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.125 0.875 50 H 0.067 0.933 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.923 -5.463 -20.619 21.351 hybrid contribution -1.311 0.318 0.628 1.488 sum -0.388 -5.145 -19.992 20.647 Atomic orbital electron populations 1.22879 0.80254 1.03764 1.00082 1.87807 1.20612 1.27321 1.95425 1.22932 0.94291 0.85188 1.00141 1.20944 0.91659 0.97823 0.83971 0.89580 1.45920 1.69564 1.11979 1.09398 1.21042 0.75683 0.86938 0.85340 1.90656 1.52040 1.17193 1.85168 1.20288 1.03376 0.97488 0.89959 1.19540 0.93268 1.03250 1.02367 1.20741 0.96309 0.96644 0.97393 1.20727 0.98059 1.04820 1.02267 1.20953 0.93743 0.99733 0.99332 1.21355 0.96752 1.00052 1.03012 1.17726 0.92777 0.89530 0.90694 1.19581 0.98458 1.35676 0.97268 0.91406 1.26635 1.04353 0.92824 0.94077 1.69870 1.37132 1.37724 1.00997 0.85396 0.76997 0.79594 0.78919 1.18048 1.19212 1.19254 1.21839 0.96979 1.00475 0.93638 0.89071 1.21653 1.01939 0.98932 0.92884 1.22130 0.96267 1.01193 0.98879 1.22805 0.95250 0.98479 0.86064 1.87924 1.81161 1.47961 1.14702 1.22592 0.92833 0.96556 0.88941 0.88029 0.95696 0.92378 0.95971 0.90493 0.75173 0.88869 0.86921 0.86458 0.86683 0.87758 0.88381 0.90489 0.90658 0.91335 0.88918 0.91226 0.92745 0.87535 0.93349 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.39 -10.05 9.74 -148.98 -1.45 -11.50 16 3 C 0.05 1.39 5.34 71.98 0.38 1.77 16 4 C 0.16 4.05 1.95 44.99 0.09 4.14 16 5 H 0.09 2.42 7.58 -2.39 -0.02 2.40 16 6 N -0.72 -20.15 4.31 -442.54 -1.91 -22.06 16 7 C 0.52 19.85 7.42 87.66 0.65 20.50 16 8 O -0.57 -27.20 15.70 -3.05 -0.05 -27.25 16 9 C -0.07 -2.76 5.18 29.10 0.15 -2.61 16 10 C -0.18 -8.84 4.43 -19.40 -0.09 -8.92 16 11 C -0.09 -4.19 9.66 22.22 0.21 -3.98 16 12 C -0.24 -10.99 10.05 22.46 0.23 -10.77 16 13 C -0.12 -5.95 10.02 22.22 0.22 -5.73 16 14 C -0.19 -10.79 8.68 22.73 0.20 -10.59 16 15 C 0.09 5.27 5.56 -21.29 -0.12 5.15 16 16 C -0.48 -26.34 8.13 23.46 0.19 -26.15 16 17 H 0.07 3.66 6.69 -2.91 -0.02 3.64 16 18 C 0.03 1.81 5.22 85.26 0.45 2.25 16 19 N -0.83 -44.79 10.84 21.83 0.24 -44.56 16 20 Si 0.97 39.82 29.58 68.60 2.03 41.85 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.11 -2.11 1.87 -10.71 -0.02 -2.13 16 25 H 0.09 1.88 7.49 -2.38 -0.02 1.86 16 26 C -0.12 -1.80 4.94 30.71 0.15 -1.64 16 27 C -0.15 -1.87 6.14 30.68 0.19 -1.68 16 28 C 0.05 0.72 6.84 72.01 0.49 1.22 16 29 O -0.40 -8.14 10.77 -148.98 -1.60 -9.75 16 30 C 0.07 1.33 5.89 72.01 0.42 1.76 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.64 6.80 -2.39 -0.02 1.63 16 36 H 0.41 9.49 8.24 -92.71 -0.76 8.73 16 37 H 0.09 3.66 7.08 -2.39 -0.02 3.64 16 38 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16 39 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.10 5.77 6.16 -2.91 -0.02 5.76 16 43 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 44 H 0.07 1.12 6.78 -2.39 -0.02 1.10 16 45 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 50 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.10 1.86 7.36 -2.39 -0.02 1.84 16 Total: -1.00 -70.37 406.71 2.47 -67.91 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: 0.16 Total: 40.98 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 5.05 Total: -35.62 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -1.67 Total: -66.62 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -3.10 Total: -48.50 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -70.37 2.47 -67.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894831739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.360 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds