Wall clock time and date at job start Wed Apr 1 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 114.00179 * 2 1 4 4 C 1.52995 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47220 * 184.99869 * 4 3 2 6 6 N 1.46510 * 109.46960 * 65.00346 * 4 3 2 7 7 C 1.34771 * 119.99808 * 84.99746 * 6 4 3 8 8 O 1.21280 * 120.00561 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99672 * 180.02562 * 7 6 4 10 10 C 1.50702 * 109.46944 * 180.02562 * 9 7 6 11 11 C 1.37644 * 120.12622 * 264.72249 * 10 9 7 12 12 C 1.38610 * 120.24509 * 179.70328 * 11 10 9 13 13 C 1.38655 * 120.50222 * 0.59846 * 12 11 10 14 14 C 1.37595 * 120.25180 * 359.68469 * 13 12 11 15 15 C 1.40693 * 120.13117 * 85.00100 * 10 9 7 16 16 C 1.41405 * 120.24171 * 0.02562 * 15 10 9 17 17 H 1.08003 * 119.99856 * 334.04669 * 16 15 10 18 18 C 1.39947 * 119.99960 * 154.05768 * 16 15 10 19 19 N 1.30814 * 119.99975 * 343.64686 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 163.65107 * 18 16 15 21 21 H 1.48507 * 109.47068 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47107 * 119.99454 * 20 18 16 23 23 H 1.48498 * 109.47162 * 239.99457 * 20 18 16 24 24 C 1.52994 * 109.47621 * 305.00178 * 4 3 2 25 25 H 1.08998 * 109.52466 * 59.87437 * 24 4 3 26 26 C 1.53173 * 109.52458 * 180.02562 * 24 4 3 27 27 C 1.53181 * 109.03865 * 176.94974 * 26 24 4 28 28 C 1.53091 * 109.15965 * 303.01682 * 27 26 24 29 29 O 1.42904 * 109.42537 * 57.60366 * 28 27 26 30 30 C 1.42898 * 114.09838 * 298.85928 * 29 28 27 31 31 H 1.09007 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47328 * 299.99637 * 1 2 3 33 33 H 1.08998 * 109.47415 * 60.00454 * 1 2 3 34 34 H 1.09004 * 109.46607 * 60.00000 * 3 2 1 35 35 H 1.08996 * 109.46595 * 300.00210 * 3 2 1 36 36 H 0.96998 * 119.99699 * 264.99571 * 6 4 3 37 37 H 1.09001 * 109.47219 * 299.99525 * 9 7 6 38 38 H 1.08994 * 109.46999 * 59.99783 * 9 7 6 39 39 H 1.07998 * 119.87276 * 359.97438 * 11 10 9 40 40 H 1.08003 * 119.74694 * 180.30259 * 12 11 10 41 41 H 1.08001 * 119.87228 * 179.70055 * 13 12 11 42 42 H 1.07999 * 120.13144 * 180.02562 * 14 13 12 43 43 H 0.97003 * 120.00351 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.54526 * 57.07951 * 26 24 4 45 45 H 1.09007 * 109.54215 * 296.81314 * 26 24 4 46 46 H 1.09002 * 109.52182 * 183.11294 * 27 26 24 47 47 H 1.09002 * 109.57243 * 62.95414 * 27 26 24 48 48 H 1.09007 * 109.47869 * 177.58933 * 28 27 26 49 49 H 1.09002 * 109.47967 * 297.61332 * 28 27 26 50 50 H 1.09004 * 109.47109 * 301.15829 * 30 29 28 51 51 H 1.08991 * 109.49365 * 181.13689 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9766 0.5640 -1.2510 7 6 4.1662 1.3222 -2.3489 8 8 3.9711 2.5183 -2.3010 9 6 4.6194 0.6837 -3.6365 10 6 4.7552 1.7415 -4.7012 11 6 3.7184 1.9797 -5.5747 12 6 3.8383 2.9563 -6.5510 13 6 5.0057 3.6952 -6.6677 14 6 6.0572 3.4702 -5.8092 15 6 5.9444 2.4855 -4.8101 16 6 7.0185 2.2452 -3.9224 17 1 6.8274 1.8345 -2.9420 18 6 8.3294 2.5397 -4.3143 19 7 8.6074 2.7278 -5.5787 20 14 9.6820 2.6640 -3.0320 21 1 9.1113 2.4111 -1.6844 22 1 10.7331 1.6559 -3.3219 23 1 10.2766 4.0242 -3.0700 24 6 3.9781 0.3198 1.1825 25 1 3.5338 -0.6717 1.0950 26 6 5.5050 0.1986 1.1846 27 6 5.9408 -0.6047 2.4139 28 6 5.4107 0.0809 3.6759 29 8 3.9881 0.1896 3.5958 30 6 3.5237 0.9696 2.4922 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 1.6885 1.8463 -0.8900 36 1 4.1322 -0.3927 -1.2894 37 1 5.5832 0.1986 -3.4819 38 1 3.8858 -0.0580 -3.9521 39 1 2.8065 1.4064 -5.4961 40 1 3.0178 3.1398 -7.2290 41 1 5.0899 4.4503 -7.4352 42 1 6.9655 4.0472 -5.9016 43 1 9.5160 2.9315 -5.8504 44 1 5.9497 1.1930 1.2224 45 1 5.8313 -0.3140 0.2796 46 1 7.0292 -0.6488 2.4531 47 1 5.5373 -1.6154 2.3515 48 1 5.6814 -0.5096 4.5513 49 1 5.8473 1.0762 3.7595 50 1 3.9354 1.9766 2.5602 51 1 2.4352 1.0197 2.5146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894831742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:22 Heat of formation + Delta-G solvation = -125.722871 kcal Electronic energy + Delta-G solvation = -31719.217344 eV Core-core repulsion = 27582.626060 eV Total energy + Delta-G solvation = -4136.591284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.18537 -38.96004 -37.90794 -37.19085 -35.31857 -33.59394 -33.06021 -32.03535 -31.29134 -29.42749 -28.81805 -26.90511 -26.12057 -25.16697 -24.76382 -24.19492 -21.55744 -20.89654 -20.29356 -20.27137 -19.21823 -17.18150 -16.90783 -16.82432 -16.04812 -15.99031 -15.68948 -15.58874 -15.43486 -15.13785 -14.77502 -14.45125 -14.42132 -14.02405 -13.60184 -13.36797 -13.26205 -12.97611 -12.76807 -12.58938 -12.52181 -12.21337 -12.02829 -11.69230 -11.62465 -11.53874 -11.30811 -11.15392 -11.05231 -10.96842 -10.95742 -10.65650 -10.58008 -10.44727 -10.37120 -9.73992 -9.66659 -9.45378 -9.34522 -9.15191 -9.08105 -8.68350 -7.28259 -7.25832 -6.71293 -4.31425 2.79637 2.99390 3.07895 3.12449 3.28382 3.34775 3.56921 3.69508 3.80763 3.94854 4.49819 4.59999 4.68650 4.73965 4.83019 4.97147 5.06561 5.12621 5.19788 5.23436 5.28644 5.36974 5.44661 5.50103 5.53206 5.54463 5.63701 5.68494 5.76651 5.84296 5.88564 5.91880 6.04831 6.08350 6.19552 6.28729 6.32105 6.47330 6.54001 6.80972 6.84086 6.99839 7.06923 7.11427 7.32609 7.45339 7.67354 7.93092 8.00975 8.11196 8.16173 8.34614 8.67889 8.90210 8.94804 9.04677 10.23052 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.003754 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.216368 B = 7457.201842 C = 9877.902273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.046 3.954 4 C 0.159 3.841 5 H 0.099 0.901 6 N -0.731 5.731 7 C 0.517 3.483 8 O -0.524 6.524 9 C -0.071 4.071 10 C -0.178 4.178 11 C -0.082 4.082 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.160 4.160 15 C 0.129 3.871 16 C -0.456 4.456 17 H 0.074 0.926 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.902 3.098 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.273 1.273 24 C -0.124 4.124 25 H 0.094 0.906 26 C -0.119 4.119 27 C -0.155 4.155 28 C 0.058 3.942 29 O -0.381 6.381 30 C 0.070 3.930 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.398 0.602 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.278 0.722 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.050 0.950 50 H 0.051 0.949 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -7.048 14.694 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.032 4.032 4 C 0.054 3.946 5 H 0.117 0.883 6 N -0.385 5.385 7 C 0.305 3.695 8 O -0.399 6.399 9 C -0.111 4.111 10 C -0.180 4.180 11 C -0.100 4.100 12 C -0.259 4.259 13 C -0.126 4.126 14 C -0.179 4.179 15 C 0.127 3.873 16 C -0.485 4.485 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.421 5.421 20 Si 0.726 3.274 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.198 1.198 24 C -0.143 4.143 25 H 0.112 0.888 26 C -0.157 4.157 27 C -0.192 4.192 28 C -0.018 4.018 29 O -0.300 6.300 30 C -0.008 4.008 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.232 0.768 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.109 0.891 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.370 -6.361 14.687 17.621 hybrid contribution 0.699 0.035 0.176 0.721 sum -6.671 -6.327 14.863 17.477 Atomic orbital electron populations 1.22709 0.81460 1.02473 0.99826 1.87861 1.19267 1.27687 1.95385 1.23088 0.94363 0.84949 1.00754 1.20835 0.91345 0.98272 0.84185 0.88278 1.46062 1.71097 1.11451 1.09882 1.21227 0.75889 0.87403 0.84960 1.90669 1.49575 1.15090 1.84521 1.20259 1.02003 0.97842 0.90966 1.19046 0.97394 1.01747 0.99830 1.20299 0.96152 0.97589 0.95991 1.20301 0.98330 1.03700 1.03565 1.20668 0.94316 0.98882 0.98732 1.21289 0.98086 1.00025 0.98488 1.17335 0.90705 0.88368 0.90926 1.19494 0.90380 1.37674 1.01001 0.90756 1.25867 1.00142 0.92555 0.95450 1.69826 1.21500 1.34770 1.16042 0.86372 0.80380 0.78709 0.81912 1.18552 1.20061 1.19769 1.21960 0.96581 1.01447 0.94321 0.88782 1.21653 0.94601 1.01032 0.98410 1.22183 1.01337 1.00306 0.95407 1.22599 0.81397 0.99902 0.97947 1.87932 1.21396 1.73040 1.47588 1.22592 0.99745 0.93466 0.84962 0.89821 0.94364 0.94176 0.92854 0.92307 0.76796 0.88640 0.90655 0.89844 0.89734 0.89640 0.86584 0.91069 0.91573 0.90756 0.90841 0.91032 0.89090 0.93214 0.93079 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.56 9.77 -35.23 -0.34 -4.90 16 3 C 0.05 0.57 5.25 37.15 0.19 0.76 16 4 C 0.16 2.06 1.95 -67.93 -0.13 1.93 16 5 H 0.10 1.46 7.58 -51.93 -0.39 1.07 16 6 N -0.73 -10.54 4.39 -53.80 -0.24 -10.77 16 7 C 0.52 9.84 7.43 -10.99 -0.08 9.76 16 8 O -0.52 -12.18 15.70 5.56 0.09 -12.09 16 9 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 10 C -0.18 -4.29 4.43 -103.91 -0.46 -4.75 16 11 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 12 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 13 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 14 C -0.16 -4.29 8.68 -38.87 -0.34 -4.62 16 15 C 0.13 3.45 5.56 -106.82 -0.59 2.85 16 16 C -0.46 -11.92 8.14 -37.74 -0.31 -12.23 16 17 H 0.07 1.89 6.68 -52.48 -0.35 1.54 16 18 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 19 N -0.80 -20.55 10.97 55.55 0.61 -19.94 16 20 Si 0.90 18.78 29.59 -169.99 -5.03 13.75 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.12 -1.34 1.82 -90.48 -0.16 -1.51 16 25 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 26 C -0.12 -1.31 5.10 -26.55 -0.14 -1.44 16 27 C -0.15 -1.44 6.14 -26.59 -0.16 -1.60 16 28 C 0.06 0.54 6.84 37.20 0.25 0.79 16 29 O -0.38 -4.30 10.77 -35.23 -0.38 -4.68 16 30 C 0.07 0.72 5.71 37.21 0.21 0.93 16 31 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.55 6.78 -51.93 -0.35 0.20 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.86 8.40 -40.82 -0.34 4.52 16 37 H 0.10 1.83 7.06 -51.93 -0.37 1.47 16 38 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 39 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 3.20 6.22 -52.49 -0.33 2.88 16 43 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.85 7.56 -51.93 -0.39 0.45 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.09 0.91 6.70 -51.93 -0.35 0.56 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -31.05 407.11 -9.49 -40.54 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.31 Total: 10.74 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.02 Total: -18.78 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.37 Total: -30.71 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.64 Total: -21.68 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.05 -9.49 -40.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894831742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.181 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds