Wall clock time and date at job start Wed Apr 1 2020 05:48:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42897 * 114.00077 * 2 1
4 4 C 1.52997 * 109.47432 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.47199 * 184.12701 * 4 3 2
6 6 N 1.46507 * 109.46922 * 64.13067 * 4 3 2
7 7 C 1.34770 * 119.99887 * 84.99985 * 6 4 3
8 8 O 1.21281 * 120.00035 * 0.02562 * 7 6 4
9 9 C 1.50703 * 120.00059 * 180.02562 * 7 6 4
10 10 C 1.50704 * 109.47384 * 180.02562 * 9 7 6
11 11 C 1.37642 * 120.12461 * 265.00152 * 10 9 7
12 12 C 1.38617 * 120.24503 * 179.97438 * 11 10 9
13 13 C 1.38651 * 120.50280 * 0.02562 * 12 11 10
14 14 C 1.37605 * 120.25019 * 0.02756 * 13 12 11
15 15 C 1.40692 * 120.12588 * 84.72325 * 10 9 7
16 16 C 1.41391 * 120.24755 * 359.97438 * 15 10 9
17 17 H 1.08004 * 120.00060 * 333.42609 * 16 15 10
18 18 C 1.39946 * 120.00250 * 153.42904 * 16 15 10
19 19 N 1.30825 * 119.99711 * 346.34548 * 18 16 15
20 20 Si 1.86799 * 120.00255 * 166.35601 * 18 16 15
21 21 H 1.48497 * 109.47319 * 89.99626 * 20 18 16
22 22 H 1.48496 * 109.47112 * 209.99914 * 20 18 16
23 23 H 1.48503 * 109.46862 * 329.99666 * 20 18 16
24 24 C 1.53000 * 109.47286 * 304.13384 * 4 3 2
25 25 H 1.09002 * 109.52481 * 57.34490 * 24 4 3
26 26 C 1.53173 * 109.51889 * 297.22163 * 24 4 3
27 27 C 1.53184 * 109.03650 * 183.05306 * 26 24 4
28 28 C 1.53089 * 109.16273 * 56.97712 * 27 26 24
29 29 O 1.42907 * 109.41650 * 302.39594 * 28 27 26
30 30 C 1.42895 * 114.10023 * 61.15635 * 29 28 27
31 31 H 1.08999 * 109.47304 * 59.99930 * 1 2 3
32 32 H 1.09004 * 109.47144 * 180.02562 * 1 2 3
33 33 H 1.09005 * 109.46978 * 299.99580 * 1 2 3
34 34 H 1.09008 * 109.46995 * 59.99884 * 3 2 1
35 35 H 1.09001 * 109.47511 * 300.00249 * 3 2 1
36 36 H 0.97000 * 119.99802 * 265.00532 * 6 4 3
37 37 H 1.08994 * 109.47209 * 299.99946 * 9 7 6
38 38 H 1.08999 * 109.47198 * 59.99934 * 9 7 6
39 39 H 1.07997 * 119.87591 * 359.97438 * 11 10 9
40 40 H 1.07993 * 119.74519 * 179.97438 * 12 11 10
41 41 H 1.07998 * 119.87610 * 180.02562 * 13 12 11
42 42 H 1.07993 * 120.13071 * 179.97438 * 14 13 12
43 43 H 0.97004 * 119.99864 * 180.02562 * 19 18 16
44 44 H 1.09002 * 109.54399 * 302.91748 * 26 24 4
45 45 H 1.08997 * 109.55018 * 63.18596 * 26 24 4
46 46 H 1.08995 * 109.52729 * 176.88674 * 27 26 24
47 47 H 1.09005 * 109.51742 * 297.01106 * 27 26 24
48 48 H 1.09001 * 109.47768 * 62.37969 * 28 27 26
49 49 H 1.09007 * 109.47963 * 182.39828 * 28 27 26
50 50 H 1.08992 * 109.48319 * 178.86027 * 30 29 28
51 51 H 1.09008 * 109.47961 * 58.82492 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1847 0.0006
5 1 3.9785 2.1778 0.0746
6 7 3.9752 0.5451 -1.2419
7 6 4.1634 1.2866 -2.3515
8 8 3.9693 2.4834 -2.3212
9 6 4.6152 0.6287 -3.6298
10 6 4.7497 1.6702 -4.7106
11 6 3.7097 1.8991 -5.5827
12 6 3.8304 2.8569 -6.5775
13 6 4.9976 3.5942 -6.7065
14 6 6.0505 3.3815 -5.8465
15 6 5.9365 2.4165 -4.8284
16 6 7.0091 2.1946 -3.9342
17 1 6.8157 1.8088 -2.9442
18 6 8.3212 2.4749 -4.3320
19 7 8.5915 2.6830 -5.5950
20 14 9.6868 2.5516 -3.0598
21 1 10.2880 1.2035 -2.8970
22 1 10.7299 3.5077 -3.5102
23 1 9.1280 3.0045 -1.7606
24 6 3.9795 0.3378 1.1950
25 1 3.4997 -0.6398 1.1469
26 6 3.5811 1.0399 2.4967
27 6 4.0976 0.2216 3.6841
28 6 5.6136 0.0517 3.5560
29 8 5.9174 -0.5793 2.3103
30 6 5.5002 0.1634 1.1630
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3634 -1.0277 0.0005
33 1 -0.3633 0.5138 0.8901
34 1 1.6886 1.8464 0.8900
35 1 1.6886 1.8464 -0.8899
36 1 4.1307 -0.4120 -1.2660
37 1 5.5791 0.1460 -3.4690
38 1 3.8812 -0.1178 -3.9334
39 1 2.7961 1.3302 -5.4916
40 1 3.0095 3.0295 -7.2576
41 1 5.0806 4.3382 -7.4849
42 1 6.9588 3.9566 -5.9491
43 1 9.5010 2.8769 -5.8708
44 1 4.0207 2.0371 2.5224
45 1 2.4953 1.1172 2.5519
46 1 3.8666 0.7422 4.6134
47 1 3.6193 -0.7580 3.6869
48 1 6.0935 1.0297 3.5947
49 1 5.9808 -0.5660 4.3757
50 1 5.7855 -0.3739 0.2586
51 1 5.9786 1.1429 1.1703
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000894831743.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:48:25
Heat of formation + Delta-G solvation = -143.981403 kcal
Electronic energy + Delta-G solvation = -31733.499489 eV
Core-core repulsion = 27596.116455 eV
Total energy + Delta-G solvation = -4137.383033 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.193 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-41.30715 -40.22157 -39.19805 -38.62539 -36.37833 -35.47965 -34.35736 -33.45476
-32.18174 -31.30776 -30.03926 -28.43630 -27.11942 -26.76350 -26.03781 -24.70197
-22.97005 -22.76442 -21.64757 -21.32580 -20.66023 -19.05276 -18.07665 -17.72951
-17.27548 -17.20114 -17.06523 -16.70747 -16.49844 -16.25347 -16.08011 -15.88403
-15.57632 -15.37044 -14.91575 -14.83293 -14.65920 -14.36613 -14.00377 -13.71531
-13.59389 -13.45508 -13.35080 -13.18509 -12.87206 -12.75614 -12.74275 -12.59886
-12.49345 -12.35427 -12.11814 -12.08957 -11.91028 -11.68728 -11.32136 -11.24573
-11.18986 -11.02685 -10.76491 -10.57522 -10.43272 -9.95708 -9.19816 -9.14298
-8.55764 -6.28252 1.00803 1.14987 1.36414 1.47359 1.53831 1.86126
2.20754 2.32088 2.80996 2.86071 2.89959 3.57968 3.75749 3.77504
3.83637 4.00813 4.11493 4.20547 4.26035 4.28604 4.36879 4.39894
4.44423 4.51865 4.54032 4.57928 4.61225 4.63654 4.66605 4.72359
4.75728 4.81457 4.83116 4.86059 4.94168 5.03629 5.08261 5.13364
5.20283 5.21894 5.39421 5.40304 5.56687 5.58820 5.79370 6.05611
6.17712 6.18985 6.22944 6.23816 6.43977 6.68580 6.77420 7.01645
7.13225 7.46713 8.39661
Molecular weight = 347.19amu
Principal moments of inertia in cm(-1)
A = 0.009679 B = 0.003807 C = 0.002855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2892.104762 B = 7354.025575 C = 9804.513021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.394 6.394
3 C 0.058 3.942
4 C 0.158 3.842
5 H 0.079 0.921
6 N -0.716 5.716
7 C 0.522 3.478
8 O -0.572 6.572
9 C -0.071 4.071
10 C -0.183 4.183
11 C -0.094 4.094
12 C -0.242 4.242
13 C -0.119 4.119
14 C -0.193 4.193
15 C 0.096 3.904
16 C -0.479 4.479
17 H 0.072 0.928
18 C 0.036 3.964
19 N -0.829 5.829
20 Si 0.970 3.030
21 H -0.256 1.256
22 H -0.269 1.269
23 H -0.267 1.267
24 C -0.109 4.109
25 H 0.096 0.904
26 C -0.116 4.116
27 C -0.146 4.146
28 C 0.048 3.952
29 O -0.398 6.398
30 C 0.065 3.935
31 H 0.034 0.966
32 H 0.100 0.900
33 H 0.053 0.947
34 H 0.076 0.924
35 H 0.031 0.969
36 H 0.412 0.588
37 H 0.097 0.903
38 H 0.108 0.892
39 H 0.114 0.886
40 H 0.114 0.886
41 H 0.104 0.896
42 H 0.099 0.901
43 H 0.285 0.715
44 H 0.064 0.936
45 H 0.081 0.919
46 H 0.093 0.907
47 H 0.073 0.927
48 H 0.050 0.950
49 H 0.108 0.892
50 H 0.092 0.908
51 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.207 -7.693 17.888 21.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.313 6.313
3 C -0.020 4.020
4 C 0.053 3.947
5 H 0.097 0.903
6 N -0.369 5.369
7 C 0.310 3.690
8 O -0.451 6.451
9 C -0.111 4.111
10 C -0.185 4.185
11 C -0.112 4.112
12 C -0.261 4.261
13 C -0.137 4.137
14 C -0.212 4.212
15 C 0.094 3.906
16 C -0.509 4.509
17 H 0.090 0.910
18 C -0.178 4.178
19 N -0.456 5.456
20 Si 0.791 3.209
21 H -0.181 1.181
22 H -0.193 1.193
23 H -0.191 1.191
24 C -0.128 4.128
25 H 0.114 0.886
26 C -0.153 4.153
27 C -0.183 4.183
28 C -0.028 4.028
29 O -0.317 6.317
30 C -0.012 4.012
31 H 0.053 0.947
32 H 0.118 0.882
33 H 0.072 0.928
34 H 0.094 0.906
35 H 0.049 0.951
36 H 0.248 0.752
37 H 0.115 0.885
38 H 0.126 0.874
39 H 0.132 0.868
40 H 0.132 0.868
41 H 0.122 0.878
42 H 0.117 0.883
43 H 0.095 0.905
44 H 0.082 0.918
45 H 0.100 0.900
46 H 0.112 0.888
47 H 0.091 0.909
48 H 0.068 0.932
49 H 0.126 0.874
50 H 0.110 0.890
51 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -9.941 -7.139 17.735 21.548
hybrid contribution 0.511 0.603 -0.153 0.805
sum -9.429 -6.536 17.582 20.994
Atomic orbital electron populations
1.22892 0.79994 1.03758 1.00327 1.87828 1.20838 1.27163 1.95456
1.22851 0.93373 0.85263 1.00473 1.20952 0.92387 0.97499 0.83879
0.90307 1.45914 1.69580 1.12021 1.09361 1.21037 0.75454 0.86918
0.85601 1.90654 1.52042 1.16950 1.85410 1.20283 1.03202 0.97253
0.90338 1.19535 0.96556 1.01951 1.00463 1.20720 0.97024 0.97936
0.95483 1.20710 0.98546 1.03373 1.03458 1.20949 0.94308 0.99598
0.98868 1.21373 0.98482 1.01302 1.00062 1.17722 0.92186 0.89070
0.91616 1.19617 0.91273 1.39897 1.00157 0.91028 1.26643 1.02146
0.91799 0.97232 1.69878 1.22509 1.35727 1.17493 0.85389 0.77244
0.79500 0.78754 1.18078 1.19345 1.19100 1.21833 0.96252 1.00778
0.93934 0.88563 1.21657 1.02129 0.98762 0.92802 1.22124 0.95867
1.01385 0.98949 1.22831 0.95602 0.98373 0.86024 1.87922 1.81166
1.47980 1.14671 1.22596 0.93534 0.96200 0.88904 0.94748 0.88153
0.92824 0.90601 0.95089 0.75174 0.88505 0.87358 0.86810 0.86799
0.87763 0.88259 0.90482 0.91757 0.90049 0.88809 0.90854 0.93192
0.87417 0.89009 0.94154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.42 11.01 113.37 1.25 1.67 16
2 O -0.39 -8.50 9.75 -148.98 -1.45 -9.95 16
3 C 0.06 1.36 5.33 71.98 0.38 1.74 16
4 C 0.16 3.99 1.95 44.99 0.09 4.08 16
5 H 0.08 2.36 7.58 -2.39 -0.02 2.35 16
6 N -0.72 -20.24 4.33 -442.53 -1.91 -22.15 16
7 C 0.52 19.89 7.40 87.66 0.65 20.54 16
8 O -0.57 -27.23 15.70 -3.03 -0.05 -27.28 16
9 C -0.07 -2.75 5.18 29.10 0.15 -2.60 16
10 C -0.18 -8.90 4.43 -19.40 -0.09 -8.98 16
11 C -0.09 -4.27 9.66 22.22 0.21 -4.06 16
12 C -0.24 -11.18 10.05 22.46 0.23 -10.95 16
13 C -0.12 -5.95 10.02 22.22 0.22 -5.72 16
14 C -0.19 -10.79 8.68 22.73 0.20 -10.60 16
15 C 0.10 5.32 5.57 -21.29 -0.12 5.20 16
16 C -0.48 -26.05 8.14 23.46 0.19 -25.86 16
17 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16
18 C 0.04 1.84 5.22 85.26 0.44 2.28 16
19 N -0.83 -44.49 10.83 21.83 0.24 -44.25 16
20 Si 0.97 39.63 29.58 68.60 2.03 41.65 16
21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16
22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16
23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16
24 C -0.11 -2.20 1.86 -10.70 -0.02 -2.22 16
25 H 0.10 1.97 7.50 -2.39 -0.02 1.96 16
26 C -0.12 -1.87 4.93 30.71 0.15 -1.72 16
27 C -0.15 -1.99 6.14 30.69 0.19 -1.80 16
28 C 0.05 0.80 6.84 72.01 0.49 1.30 16
29 O -0.40 -9.35 10.77 -148.98 -1.60 -10.95 16
30 C 0.06 1.51 5.90 72.01 0.42 1.94 16
31 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16
32 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16
33 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16
34 H 0.08 1.43 6.79 -2.38 -0.02 1.41 16
35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16
36 H 0.41 9.54 8.24 -92.71 -0.76 8.78 16
37 H 0.10 3.72 7.09 -2.39 -0.02 3.71 16
38 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16
39 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16
40 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16
41 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16
42 H 0.10 5.82 6.14 -2.91 -0.02 5.80 16
43 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16
44 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16
45 H 0.08 1.16 6.77 -2.39 -0.02 1.14 16
46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
47 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
48 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
49 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16
50 H 0.09 2.21 7.38 -2.39 -0.02 2.19 16
51 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16
Total: -1.00 -69.81 406.69 2.46 -67.35
By element:
Atomic # 1 Polarization: 41.19 SS G_CDS: 0.16 Total: 41.35 kcal
Atomic # 6 Polarization: -40.81 SS G_CDS: 5.05 Total: -35.76 kcal
Atomic # 7 Polarization: -64.73 SS G_CDS: -1.68 Total: -66.41 kcal
Atomic # 8 Polarization: -45.08 SS G_CDS: -3.10 Total: -48.19 kcal
Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.65 kcal
Total: -69.81 2.46 -67.35 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000894831743.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.630 kcal
(2) G-P(sol) polarization free energy of solvation -69.811 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds