Wall clock time and date at job start Wed Apr 1 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00077 * 2 1 4 4 C 1.52997 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47199 * 184.12701 * 4 3 2 6 6 N 1.46507 * 109.46922 * 64.13067 * 4 3 2 7 7 C 1.34770 * 119.99887 * 84.99985 * 6 4 3 8 8 O 1.21281 * 120.00035 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00059 * 180.02562 * 7 6 4 10 10 C 1.50704 * 109.47384 * 180.02562 * 9 7 6 11 11 C 1.37642 * 120.12461 * 265.00152 * 10 9 7 12 12 C 1.38617 * 120.24503 * 179.97438 * 11 10 9 13 13 C 1.38651 * 120.50280 * 0.02562 * 12 11 10 14 14 C 1.37605 * 120.25019 * 0.02756 * 13 12 11 15 15 C 1.40692 * 120.12588 * 84.72325 * 10 9 7 16 16 C 1.41391 * 120.24755 * 359.97438 * 15 10 9 17 17 H 1.08004 * 120.00060 * 333.42609 * 16 15 10 18 18 C 1.39946 * 120.00250 * 153.42904 * 16 15 10 19 19 N 1.30825 * 119.99711 * 346.34548 * 18 16 15 20 20 Si 1.86799 * 120.00255 * 166.35601 * 18 16 15 21 21 H 1.48497 * 109.47319 * 89.99626 * 20 18 16 22 22 H 1.48496 * 109.47112 * 209.99914 * 20 18 16 23 23 H 1.48503 * 109.46862 * 329.99666 * 20 18 16 24 24 C 1.53000 * 109.47286 * 304.13384 * 4 3 2 25 25 H 1.09002 * 109.52481 * 57.34490 * 24 4 3 26 26 C 1.53173 * 109.51889 * 297.22163 * 24 4 3 27 27 C 1.53184 * 109.03650 * 183.05306 * 26 24 4 28 28 C 1.53089 * 109.16273 * 56.97712 * 27 26 24 29 29 O 1.42907 * 109.41650 * 302.39594 * 28 27 26 30 30 C 1.42895 * 114.10023 * 61.15635 * 29 28 27 31 31 H 1.08999 * 109.47304 * 59.99930 * 1 2 3 32 32 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46978 * 299.99580 * 1 2 3 34 34 H 1.09008 * 109.46995 * 59.99884 * 3 2 1 35 35 H 1.09001 * 109.47511 * 300.00249 * 3 2 1 36 36 H 0.97000 * 119.99802 * 265.00532 * 6 4 3 37 37 H 1.08994 * 109.47209 * 299.99946 * 9 7 6 38 38 H 1.08999 * 109.47198 * 59.99934 * 9 7 6 39 39 H 1.07997 * 119.87591 * 359.97438 * 11 10 9 40 40 H 1.07993 * 119.74519 * 179.97438 * 12 11 10 41 41 H 1.07998 * 119.87610 * 180.02562 * 13 12 11 42 42 H 1.07993 * 120.13071 * 179.97438 * 14 13 12 43 43 H 0.97004 * 119.99864 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.54399 * 302.91748 * 26 24 4 45 45 H 1.08997 * 109.55018 * 63.18596 * 26 24 4 46 46 H 1.08995 * 109.52729 * 176.88674 * 27 26 24 47 47 H 1.09005 * 109.51742 * 297.01106 * 27 26 24 48 48 H 1.09001 * 109.47768 * 62.37969 * 28 27 26 49 49 H 1.09007 * 109.47963 * 182.39828 * 28 27 26 50 50 H 1.08992 * 109.48319 * 178.86027 * 30 29 28 51 51 H 1.09008 * 109.47961 * 58.82492 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1778 0.0746 6 7 3.9752 0.5451 -1.2419 7 6 4.1634 1.2866 -2.3515 8 8 3.9693 2.4834 -2.3212 9 6 4.6152 0.6287 -3.6298 10 6 4.7497 1.6702 -4.7106 11 6 3.7097 1.8991 -5.5827 12 6 3.8304 2.8569 -6.5775 13 6 4.9976 3.5942 -6.7065 14 6 6.0505 3.3815 -5.8465 15 6 5.9365 2.4165 -4.8284 16 6 7.0091 2.1946 -3.9342 17 1 6.8157 1.8088 -2.9442 18 6 8.3212 2.4749 -4.3320 19 7 8.5915 2.6830 -5.5950 20 14 9.6868 2.5516 -3.0598 21 1 10.2880 1.2035 -2.8970 22 1 10.7299 3.5077 -3.5102 23 1 9.1280 3.0045 -1.7606 24 6 3.9795 0.3378 1.1950 25 1 3.4997 -0.6398 1.1469 26 6 3.5811 1.0399 2.4967 27 6 4.0976 0.2216 3.6841 28 6 5.6136 0.0517 3.5560 29 8 5.9174 -0.5793 2.3103 30 6 5.5002 0.1634 1.1630 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 4.1307 -0.4120 -1.2660 37 1 5.5791 0.1460 -3.4690 38 1 3.8812 -0.1178 -3.9334 39 1 2.7961 1.3302 -5.4916 40 1 3.0095 3.0295 -7.2576 41 1 5.0806 4.3382 -7.4849 42 1 6.9588 3.9566 -5.9491 43 1 9.5010 2.8769 -5.8708 44 1 4.0207 2.0371 2.5224 45 1 2.4953 1.1172 2.5519 46 1 3.8666 0.7422 4.6134 47 1 3.6193 -0.7580 3.6869 48 1 6.0935 1.0297 3.5947 49 1 5.9808 -0.5660 4.3757 50 1 5.7855 -0.3739 0.2586 51 1 5.9786 1.1429 1.1703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894831743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:25 Heat of formation + Delta-G solvation = -143.981403 kcal Electronic energy + Delta-G solvation = -31733.499489 eV Core-core repulsion = 27596.116455 eV Total energy + Delta-G solvation = -4137.383033 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.30715 -40.22157 -39.19805 -38.62539 -36.37833 -35.47965 -34.35736 -33.45476 -32.18174 -31.30776 -30.03926 -28.43630 -27.11942 -26.76350 -26.03781 -24.70197 -22.97005 -22.76442 -21.64757 -21.32580 -20.66023 -19.05276 -18.07665 -17.72951 -17.27548 -17.20114 -17.06523 -16.70747 -16.49844 -16.25347 -16.08011 -15.88403 -15.57632 -15.37044 -14.91575 -14.83293 -14.65920 -14.36613 -14.00377 -13.71531 -13.59389 -13.45508 -13.35080 -13.18509 -12.87206 -12.75614 -12.74275 -12.59886 -12.49345 -12.35427 -12.11814 -12.08957 -11.91028 -11.68728 -11.32136 -11.24573 -11.18986 -11.02685 -10.76491 -10.57522 -10.43272 -9.95708 -9.19816 -9.14298 -8.55764 -6.28252 1.00803 1.14987 1.36414 1.47359 1.53831 1.86126 2.20754 2.32088 2.80996 2.86071 2.89959 3.57968 3.75749 3.77504 3.83637 4.00813 4.11493 4.20547 4.26035 4.28604 4.36879 4.39894 4.44423 4.51865 4.54032 4.57928 4.61225 4.63654 4.66605 4.72359 4.75728 4.81457 4.83116 4.86059 4.94168 5.03629 5.08261 5.13364 5.20283 5.21894 5.39421 5.40304 5.56687 5.58820 5.79370 6.05611 6.17712 6.18985 6.22944 6.23816 6.43977 6.68580 6.77420 7.01645 7.13225 7.46713 8.39661 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.003807 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.104762 B = 7354.025575 C = 9804.513021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.058 3.942 4 C 0.158 3.842 5 H 0.079 0.921 6 N -0.716 5.716 7 C 0.522 3.478 8 O -0.572 6.572 9 C -0.071 4.071 10 C -0.183 4.183 11 C -0.094 4.094 12 C -0.242 4.242 13 C -0.119 4.119 14 C -0.193 4.193 15 C 0.096 3.904 16 C -0.479 4.479 17 H 0.072 0.928 18 C 0.036 3.964 19 N -0.829 5.829 20 Si 0.970 3.030 21 H -0.256 1.256 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.109 4.109 25 H 0.096 0.904 26 C -0.116 4.116 27 C -0.146 4.146 28 C 0.048 3.952 29 O -0.398 6.398 30 C 0.065 3.935 31 H 0.034 0.966 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.412 0.588 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.108 0.892 50 H 0.092 0.908 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -7.693 17.888 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.020 4.020 4 C 0.053 3.947 5 H 0.097 0.903 6 N -0.369 5.369 7 C 0.310 3.690 8 O -0.451 6.451 9 C -0.111 4.111 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.261 4.261 13 C -0.137 4.137 14 C -0.212 4.212 15 C 0.094 3.906 16 C -0.509 4.509 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.456 5.456 20 Si 0.791 3.209 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.191 1.191 24 C -0.128 4.128 25 H 0.114 0.886 26 C -0.153 4.153 27 C -0.183 4.183 28 C -0.028 4.028 29 O -0.317 6.317 30 C -0.012 4.012 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.248 0.752 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.126 0.874 50 H 0.110 0.890 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.941 -7.139 17.735 21.548 hybrid contribution 0.511 0.603 -0.153 0.805 sum -9.429 -6.536 17.582 20.994 Atomic orbital electron populations 1.22892 0.79994 1.03758 1.00327 1.87828 1.20838 1.27163 1.95456 1.22851 0.93373 0.85263 1.00473 1.20952 0.92387 0.97499 0.83879 0.90307 1.45914 1.69580 1.12021 1.09361 1.21037 0.75454 0.86918 0.85601 1.90654 1.52042 1.16950 1.85410 1.20283 1.03202 0.97253 0.90338 1.19535 0.96556 1.01951 1.00463 1.20720 0.97024 0.97936 0.95483 1.20710 0.98546 1.03373 1.03458 1.20949 0.94308 0.99598 0.98868 1.21373 0.98482 1.01302 1.00062 1.17722 0.92186 0.89070 0.91616 1.19617 0.91273 1.39897 1.00157 0.91028 1.26643 1.02146 0.91799 0.97232 1.69878 1.22509 1.35727 1.17493 0.85389 0.77244 0.79500 0.78754 1.18078 1.19345 1.19100 1.21833 0.96252 1.00778 0.93934 0.88563 1.21657 1.02129 0.98762 0.92802 1.22124 0.95867 1.01385 0.98949 1.22831 0.95602 0.98373 0.86024 1.87922 1.81166 1.47980 1.14671 1.22596 0.93534 0.96200 0.88904 0.94748 0.88153 0.92824 0.90601 0.95089 0.75174 0.88505 0.87358 0.86810 0.86799 0.87763 0.88259 0.90482 0.91757 0.90049 0.88809 0.90854 0.93192 0.87417 0.89009 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.39 -8.50 9.75 -148.98 -1.45 -9.95 16 3 C 0.06 1.36 5.33 71.98 0.38 1.74 16 4 C 0.16 3.99 1.95 44.99 0.09 4.08 16 5 H 0.08 2.36 7.58 -2.39 -0.02 2.35 16 6 N -0.72 -20.24 4.33 -442.53 -1.91 -22.15 16 7 C 0.52 19.89 7.40 87.66 0.65 20.54 16 8 O -0.57 -27.23 15.70 -3.03 -0.05 -27.28 16 9 C -0.07 -2.75 5.18 29.10 0.15 -2.60 16 10 C -0.18 -8.90 4.43 -19.40 -0.09 -8.98 16 11 C -0.09 -4.27 9.66 22.22 0.21 -4.06 16 12 C -0.24 -11.18 10.05 22.46 0.23 -10.95 16 13 C -0.12 -5.95 10.02 22.22 0.22 -5.72 16 14 C -0.19 -10.79 8.68 22.73 0.20 -10.60 16 15 C 0.10 5.32 5.57 -21.29 -0.12 5.20 16 16 C -0.48 -26.05 8.14 23.46 0.19 -25.86 16 17 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16 18 C 0.04 1.84 5.22 85.26 0.44 2.28 16 19 N -0.83 -44.49 10.83 21.83 0.24 -44.25 16 20 Si 0.97 39.63 29.58 68.60 2.03 41.65 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 C -0.11 -2.20 1.86 -10.70 -0.02 -2.22 16 25 H 0.10 1.97 7.50 -2.39 -0.02 1.96 16 26 C -0.12 -1.87 4.93 30.71 0.15 -1.72 16 27 C -0.15 -1.99 6.14 30.69 0.19 -1.80 16 28 C 0.05 0.80 6.84 72.01 0.49 1.30 16 29 O -0.40 -9.35 10.77 -148.98 -1.60 -10.95 16 30 C 0.06 1.51 5.90 72.01 0.42 1.94 16 31 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 1.43 6.79 -2.38 -0.02 1.41 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.41 9.54 8.24 -92.71 -0.76 8.78 16 37 H 0.10 3.72 7.09 -2.39 -0.02 3.71 16 38 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16 39 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.10 5.82 6.14 -2.91 -0.02 5.80 16 43 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.16 6.77 -2.39 -0.02 1.14 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.09 2.21 7.38 -2.39 -0.02 2.19 16 51 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -69.81 406.69 2.46 -67.35 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: 0.16 Total: 41.35 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 5.05 Total: -35.76 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -1.68 Total: -66.41 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -3.10 Total: -48.19 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.65 kcal Total: -69.81 2.46 -67.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894831743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.630 kcal (2) G-P(sol) polarization free energy of solvation -69.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds