Wall clock time and date at job start Wed Apr 1 2020 04:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 H 1.09004 * 109.46954 * 305.00324 * 3 2 1 5 5 O 1.42906 * 109.47070 * 64.99719 * 3 2 1 6 6 C 1.52994 * 109.47318 * 185.00105 * 3 2 1 7 7 H 1.09006 * 109.58573 * 54.19866 * 6 3 2 8 8 C 1.53191 * 109.58580 * 293.77368 * 6 3 2 9 9 C 1.53045 * 109.31164 * 185.57494 * 8 6 3 10 10 C 1.53036 * 109.53425 * 61.36767 * 9 8 6 11 11 C 1.53628 * 109.24348 * 298.50476 * 10 9 8 12 12 N 1.46926 * 109.58783 * 174.48292 * 6 3 2 13 13 C 1.34773 * 120.62997 * 353.37293 * 12 6 3 14 14 O 1.21281 * 120.00137 * 5.13680 * 13 12 6 15 15 C 1.50698 * 119.99786 * 185.13267 * 13 12 6 16 16 C 1.50707 * 109.47118 * 180.02562 * 15 13 12 17 17 C 1.38322 * 119.96218 * 270.25775 * 16 15 13 18 18 C 1.38284 * 120.13527 * 180.30051 * 17 16 15 19 19 C 1.38122 * 120.06664 * 359.69499 * 18 17 16 20 20 C 1.38850 * 119.93276 * 0.02562 * 19 18 17 21 21 O 1.35754 * 120.06913 * 179.97438 * 20 19 18 22 22 C 1.34826 * 116.99942 * 354.71453 * 21 20 19 23 23 H 1.07993 * 120.00195 * 5.02783 * 22 21 20 24 24 C 1.38658 * 119.99787 * 185.03278 * 22 21 20 25 25 N 1.31559 * 119.99995 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99936 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46917 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47054 * 119.99868 * 26 24 22 29 29 H 1.48494 * 109.47145 * 239.99909 * 26 24 22 30 30 C 1.38074 * 119.96591 * 90.00124 * 16 15 13 31 31 H 1.08996 * 109.47470 * 59.99933 * 1 2 3 32 32 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47015 * 299.99915 * 1 2 3 34 34 H 1.09003 * 109.47015 * 240.00085 * 2 1 3 35 35 H 1.08993 * 109.47139 * 119.99654 * 2 1 3 36 36 H 0.96694 * 113.99345 * 60.00467 * 5 3 2 37 37 H 1.08995 * 109.49863 * 305.53020 * 8 6 3 38 38 H 1.09002 * 109.49878 * 65.59436 * 8 6 3 39 39 H 1.09003 * 109.45879 * 181.38499 * 9 8 6 40 40 H 1.08991 * 109.45987 * 301.35679 * 9 8 6 41 41 H 1.08995 * 109.49922 * 58.58700 * 10 9 8 42 42 H 1.09006 * 109.49416 * 178.65086 * 10 9 8 43 43 H 1.09001 * 109.74124 * 295.12385 * 11 10 9 44 44 H 1.08996 * 109.66297 * 174.55057 * 11 10 9 45 45 H 1.08996 * 109.47110 * 60.00208 * 15 13 12 46 46 H 1.08997 * 109.47832 * 299.99850 * 15 13 12 47 47 H 1.07993 * 119.93710 * 359.97438 * 17 16 15 48 48 H 1.07999 * 119.96794 * 179.72234 * 18 17 16 49 49 H 1.08007 * 120.03017 * 180.02562 * 19 18 17 50 50 H 0.96996 * 119.99728 * 180.02562 * 25 24 22 51 51 H 1.07997 * 120.03263 * 0.02562 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5647 1.4444 -0.1257 7 1 3.8598 0.8686 -1.0030 8 6 4.1844 0.8251 1.1309 9 6 5.7077 0.9559 1.0612 10 6 6.0925 2.4363 1.0122 11 6 5.4946 3.0733 -0.2515 12 7 4.0463 2.8261 -0.2588 13 6 3.1762 3.8469 -0.3906 14 8 1.9837 3.6419 -0.3070 15 6 3.6850 5.2429 -0.6419 16 6 2.5184 6.1911 -0.7488 17 6 1.9305 6.4271 -1.9784 18 6 0.8639 7.3012 -2.0816 19 6 0.3784 7.9365 -0.9553 20 6 0.9627 7.6972 0.2813 21 8 0.4881 8.3205 1.3899 22 6 -0.4795 9.2415 1.2074 23 1 -0.8991 9.3963 0.2244 24 6 -0.9357 9.9900 2.2817 25 7 -0.4240 9.8019 3.4791 26 14 -2.2757 11.2667 2.0287 27 1 -2.6792 11.2841 0.5997 28 1 -3.4505 10.9245 2.8700 29 1 -1.7631 12.6056 2.4153 30 6 2.0343 6.8191 0.3816 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 2.0141 1.6543 2.0138 37 1 3.8145 1.3464 2.0137 38 1 3.9116 -0.2286 1.1897 39 1 6.1525 0.4940 1.9427 40 1 6.0744 0.4556 0.1650 41 1 5.7046 2.9424 1.8962 42 1 7.1783 2.5292 0.9868 43 1 5.9460 2.6269 -1.1376 44 1 5.6821 4.1470 -0.2448 45 1 4.2542 5.2604 -1.5712 46 1 4.3274 5.5497 0.1835 47 1 2.3085 5.9319 -2.8605 48 1 0.4098 7.4869 -3.0437 49 1 -0.4550 8.6188 -1.0365 50 1 -0.7434 10.3253 4.2306 51 1 2.4914 6.6315 1.3419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912123836.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:10 Heat of formation + Delta-G solvation = -79.484070 kcal Electronic energy + Delta-G solvation = -31686.273624 eV Core-core repulsion = 27551.687405 eV Total energy + Delta-G solvation = -4134.586219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.79840 -38.95650 -37.69828 -36.84684 -36.24988 -33.07289 -32.77737 -32.28440 -31.92015 -31.03925 -29.09032 -27.43828 -26.39036 -25.16033 -24.67751 -23.12514 -21.63847 -21.38595 -21.14364 -20.44740 -18.92944 -17.50899 -17.01264 -16.83604 -16.29711 -15.88440 -15.65464 -15.35250 -14.93543 -14.74760 -14.57059 -14.32268 -14.28724 -13.90823 -13.72555 -13.50801 -13.35877 -13.20596 -13.09751 -12.53797 -12.41552 -12.27521 -12.13482 -11.96047 -11.73696 -11.69470 -11.48623 -11.35906 -11.20582 -11.12951 -11.04695 -10.97776 -10.80114 -10.66990 -10.63808 -10.49977 -10.35570 -9.67361 -9.22838 -8.82845 -8.74449 -8.48995 -7.92694 -7.09967 -6.34984 -3.93549 2.21270 2.50937 2.90170 3.03026 3.19066 3.19683 3.25423 4.04779 4.27328 4.44781 4.50878 4.59972 4.66771 4.74531 4.83262 4.96214 4.98140 5.06536 5.08633 5.14754 5.20659 5.24367 5.24722 5.35993 5.43004 5.46986 5.54440 5.58834 5.63970 5.70454 5.74586 5.76404 5.77670 5.82038 5.86766 5.90554 6.01836 6.04160 6.25923 6.28390 6.31022 6.45934 6.58887 6.77890 7.03798 7.18245 7.39339 7.47106 7.48942 7.55800 7.94790 7.95671 8.10650 8.51973 9.11046 9.83520 10.83596 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.002681 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.292618 B =10440.406442 C =10881.515832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.161 4.161 3 C 0.112 3.888 4 H 0.127 0.873 5 O -0.523 6.523 6 C 0.117 3.883 7 H 0.073 0.927 8 C -0.139 4.139 9 C -0.116 4.116 10 C -0.137 4.137 11 C 0.108 3.892 12 N -0.618 5.618 13 C 0.511 3.489 14 O -0.479 6.479 15 C -0.093 4.093 16 C -0.030 4.030 17 C -0.196 4.196 18 C -0.076 4.076 19 C -0.231 4.231 20 C 0.156 3.844 21 O -0.181 6.181 22 C -0.389 4.389 23 H 0.091 0.909 24 C 0.038 3.962 25 N -0.865 5.865 26 Si 0.940 3.060 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.277 1.277 30 C -0.170 4.170 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.348 0.652 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.125 0.875 50 H 0.268 0.732 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.603 -19.251 -7.947 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.200 4.200 3 C 0.053 3.947 4 H 0.144 0.856 5 O -0.326 6.326 6 C 0.013 3.987 7 H 0.091 0.909 8 C -0.177 4.177 9 C -0.154 4.154 10 C -0.175 4.175 11 C -0.015 4.015 12 N -0.354 5.354 13 C 0.299 3.701 14 O -0.351 6.351 15 C -0.133 4.133 16 C -0.031 4.031 17 C -0.215 4.215 18 C -0.094 4.094 19 C -0.251 4.251 20 C 0.102 3.898 21 O -0.085 6.085 22 C -0.465 4.465 23 H 0.109 0.891 24 C -0.166 4.166 25 N -0.501 5.501 26 Si 0.765 3.235 27 H -0.191 1.191 28 H -0.202 1.202 29 H -0.202 1.202 30 C -0.190 4.190 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.194 0.806 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.143 0.857 50 H 0.078 0.922 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.627 -18.852 -7.846 24.008 hybrid contribution -0.163 0.112 0.229 0.303 sum 12.464 -18.740 -7.617 23.761 Atomic orbital electron populations 1.21636 0.94913 1.00762 1.02912 1.22403 0.97604 0.98190 1.01770 1.22380 0.90197 0.90882 0.91279 0.85558 1.87024 1.76049 1.55604 1.13952 1.21972 0.96438 0.82674 0.97611 0.90886 1.22033 0.96060 1.00891 0.98707 1.21463 0.95472 0.96414 1.02010 1.22006 1.00640 0.96199 0.98686 1.21794 0.80352 1.01627 0.97730 1.48080 1.06166 1.06108 1.75090 1.20690 0.86660 0.86099 0.76634 1.90814 1.15367 1.82590 1.46378 1.20648 0.97850 0.91362 1.03462 1.18660 0.95525 0.95659 0.93240 1.20316 1.00852 1.04306 0.96064 1.20656 0.95717 0.95872 0.97146 1.21156 1.04648 1.06604 0.92674 1.19270 0.91662 0.91784 0.87038 1.83979 1.49511 1.47971 1.27017 1.21357 1.14014 1.14396 0.96743 0.89137 1.25265 0.98746 0.98108 0.94478 1.70056 1.41084 1.39480 0.99436 0.85664 0.79588 0.79528 0.78740 1.19150 1.20223 1.20232 1.19920 0.99055 1.02146 0.97831 0.92672 0.93368 0.91892 0.91764 0.92212 0.80638 0.91044 0.90859 0.91726 0.91935 0.91157 0.90827 0.91694 0.89403 0.88892 0.88740 0.88128 0.87624 0.85721 0.92236 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.81 37.16 0.36 -1.20 16 2 C -0.16 -1.55 5.28 -26.73 -0.14 -1.69 16 3 C 0.11 1.37 1.87 -26.73 -0.05 1.32 16 4 H 0.13 1.97 5.99 -52.08 -0.31 1.66 16 5 O -0.52 -7.88 10.42 -59.94 -0.62 -8.50 16 6 C 0.12 1.15 2.74 -67.60 -0.19 0.96 16 7 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 8 C -0.14 -1.07 4.72 -26.61 -0.13 -1.20 16 9 C -0.12 -0.75 5.88 -26.69 -0.16 -0.91 16 10 C -0.14 -0.94 6.10 -26.39 -0.16 -1.11 16 11 C 0.11 0.84 6.36 -3.48 -0.02 0.82 16 12 N -0.62 -6.79 2.96 -164.96 -0.49 -7.28 16 13 C 0.51 7.60 7.41 -10.99 -0.08 7.52 16 14 O -0.48 -9.09 10.39 -19.15 -0.20 -9.29 16 15 C -0.09 -1.32 4.22 -29.03 -0.12 -1.44 16 16 C -0.03 -0.57 4.37 -104.65 -0.46 -1.03 16 17 C -0.20 -3.67 9.70 -39.53 -0.38 -4.05 16 18 C -0.08 -1.51 10.04 -39.61 -0.40 -1.90 16 19 C -0.23 -5.41 9.17 -39.40 -0.36 -5.77 16 20 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 21 O -0.18 -5.44 9.76 0.05 0.00 -5.44 16 22 C -0.39 -11.36 9.49 30.89 0.29 -11.06 16 23 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 24 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 25 N -0.86 -26.23 13.67 55.48 0.76 -25.47 16 26 Si 0.94 21.31 29.55 -169.99 -5.02 16.28 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 30 C -0.17 -3.88 9.64 -39.40 -0.38 -4.26 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.49 6.99 -51.93 -0.36 0.13 16 36 H 0.35 4.08 7.05 45.56 0.32 4.40 16 37 H 0.07 0.63 6.42 -51.93 -0.33 0.30 16 38 H 0.07 0.48 7.01 -51.93 -0.36 0.11 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.64 5.96 -51.93 -0.31 0.33 16 45 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 46 H 0.09 1.19 7.43 -51.93 -0.39 0.80 16 47 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 48 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 49 H 0.13 2.90 5.64 -52.48 -0.30 2.60 16 50 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -35.37 396.34 -9.68 -45.04 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.35 Total: 8.95 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.72 Total: -20.26 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.27 Total: -32.76 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.82 Total: -23.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.37 -9.68 -45.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912123836.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.439 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds