Wall clock time and date at job start Wed Apr 1 2020 04:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 H 1.09004 * 109.46954 * 305.00324 * 3 2 1 5 5 O 1.42906 * 109.47070 * 64.99719 * 3 2 1 6 6 C 1.52994 * 109.47318 * 185.00105 * 3 2 1 7 7 H 1.09006 * 109.58573 * 54.19866 * 6 3 2 8 8 C 1.53191 * 109.58580 * 293.77368 * 6 3 2 9 9 C 1.53045 * 109.31164 * 185.57494 * 8 6 3 10 10 C 1.53036 * 109.53425 * 61.36767 * 9 8 6 11 11 C 1.53628 * 109.24348 * 298.50476 * 10 9 8 12 12 N 1.46926 * 109.58783 * 174.48292 * 6 3 2 13 13 C 1.34773 * 120.62997 * 353.37293 * 12 6 3 14 14 O 1.21281 * 120.00137 * 5.13680 * 13 12 6 15 15 C 1.50698 * 119.99786 * 185.13267 * 13 12 6 16 16 C 1.50707 * 109.47118 * 180.02562 * 15 13 12 17 17 C 1.38322 * 119.96218 * 270.25775 * 16 15 13 18 18 C 1.38284 * 120.13527 * 180.30051 * 17 16 15 19 19 C 1.38122 * 120.06664 * 359.69499 * 18 17 16 20 20 C 1.38850 * 119.93276 * 0.02562 * 19 18 17 21 21 O 1.35754 * 120.06913 * 179.97438 * 20 19 18 22 22 C 1.34826 * 116.99942 * 354.71453 * 21 20 19 23 23 H 1.07993 * 120.00195 * 5.02783 * 22 21 20 24 24 C 1.38658 * 119.99787 * 185.03278 * 22 21 20 25 25 N 1.31559 * 119.99995 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99936 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46917 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47054 * 119.99868 * 26 24 22 29 29 H 1.48494 * 109.47145 * 239.99909 * 26 24 22 30 30 C 1.38074 * 119.96591 * 90.00124 * 16 15 13 31 31 H 1.08996 * 109.47470 * 59.99933 * 1 2 3 32 32 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47015 * 299.99915 * 1 2 3 34 34 H 1.09003 * 109.47015 * 240.00085 * 2 1 3 35 35 H 1.08993 * 109.47139 * 119.99654 * 2 1 3 36 36 H 0.96694 * 113.99345 * 60.00467 * 5 3 2 37 37 H 1.08995 * 109.49863 * 305.53020 * 8 6 3 38 38 H 1.09002 * 109.49878 * 65.59436 * 8 6 3 39 39 H 1.09003 * 109.45879 * 181.38499 * 9 8 6 40 40 H 1.08991 * 109.45987 * 301.35679 * 9 8 6 41 41 H 1.08995 * 109.49922 * 58.58700 * 10 9 8 42 42 H 1.09006 * 109.49416 * 178.65086 * 10 9 8 43 43 H 1.09001 * 109.74124 * 295.12385 * 11 10 9 44 44 H 1.08996 * 109.66297 * 174.55057 * 11 10 9 45 45 H 1.08996 * 109.47110 * 60.00208 * 15 13 12 46 46 H 1.08997 * 109.47832 * 299.99850 * 15 13 12 47 47 H 1.07993 * 119.93710 * 359.97438 * 17 16 15 48 48 H 1.07999 * 119.96794 * 179.72234 * 18 17 16 49 49 H 1.08007 * 120.03017 * 180.02562 * 19 18 17 50 50 H 0.96996 * 119.99728 * 180.02562 * 25 24 22 51 51 H 1.07997 * 120.03263 * 0.02562 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5647 1.4444 -0.1257 7 1 3.8598 0.8686 -1.0030 8 6 4.1844 0.8251 1.1309 9 6 5.7077 0.9559 1.0612 10 6 6.0925 2.4363 1.0122 11 6 5.4946 3.0733 -0.2515 12 7 4.0463 2.8261 -0.2588 13 6 3.1762 3.8469 -0.3906 14 8 1.9837 3.6419 -0.3070 15 6 3.6850 5.2429 -0.6419 16 6 2.5184 6.1911 -0.7488 17 6 1.9305 6.4271 -1.9784 18 6 0.8639 7.3012 -2.0816 19 6 0.3784 7.9365 -0.9553 20 6 0.9627 7.6972 0.2813 21 8 0.4881 8.3205 1.3899 22 6 -0.4795 9.2415 1.2074 23 1 -0.8991 9.3963 0.2244 24 6 -0.9357 9.9900 2.2817 25 7 -0.4240 9.8019 3.4791 26 14 -2.2757 11.2667 2.0287 27 1 -2.6792 11.2841 0.5997 28 1 -3.4505 10.9245 2.8700 29 1 -1.7631 12.6056 2.4153 30 6 2.0343 6.8191 0.3816 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 2.0141 1.6543 2.0138 37 1 3.8145 1.3464 2.0137 38 1 3.9116 -0.2286 1.1897 39 1 6.1525 0.4940 1.9427 40 1 6.0744 0.4556 0.1650 41 1 5.7046 2.9424 1.8962 42 1 7.1783 2.5292 0.9868 43 1 5.9460 2.6269 -1.1376 44 1 5.6821 4.1470 -0.2448 45 1 4.2542 5.2604 -1.5712 46 1 4.3274 5.5497 0.1835 47 1 2.3085 5.9319 -2.8605 48 1 0.4098 7.4869 -3.0437 49 1 -0.4550 8.6188 -1.0365 50 1 -0.7434 10.3253 4.2306 51 1 2.4914 6.6315 1.3419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912123836.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:09 Heat of formation + Delta-G solvation = -102.180397 kcal Electronic energy + Delta-G solvation = -31687.257811 eV Core-core repulsion = 27551.687405 eV Total energy + Delta-G solvation = -4135.570406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.76799 -40.71413 -38.97002 -37.92773 -37.68841 -34.35196 -33.99615 -33.68701 -33.25018 -31.89252 -30.85535 -28.71453 -27.49991 -27.13673 -25.41497 -24.05026 -23.24418 -22.65588 -22.10563 -21.57505 -19.97616 -19.37049 -18.70061 -17.99906 -17.25935 -16.87573 -16.77680 -16.55778 -16.43544 -16.08743 -15.97436 -15.57135 -15.40974 -15.11838 -14.98773 -14.80559 -14.44389 -14.30904 -14.17489 -14.04010 -13.82665 -13.58794 -13.30569 -13.06358 -12.97002 -12.83225 -12.69301 -12.47262 -12.36806 -12.33757 -12.22700 -12.08602 -12.04064 -11.88602 -11.80955 -11.65825 -11.43739 -11.19269 -10.81362 -10.58005 -9.95103 -9.58421 -9.37847 -8.96336 -8.47093 -6.15702 0.54165 0.76943 1.33007 1.42290 1.52222 1.82424 2.11204 2.17616 2.83938 3.16974 3.44054 3.50478 3.71111 3.82889 3.90327 3.96083 4.06877 4.09988 4.13822 4.18342 4.23087 4.26912 4.31691 4.38021 4.42730 4.55381 4.60427 4.60729 4.62461 4.73907 4.79004 4.83716 4.91610 4.96706 5.02101 5.04152 5.04783 5.10645 5.13337 5.18919 5.23566 5.31517 5.36120 5.40733 5.48826 5.65968 5.73527 5.76813 5.77555 6.03282 6.24312 6.54862 6.97317 7.04716 7.46148 7.79795 8.76943 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.002681 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.292618 B =10440.406442 C =10881.515832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.089 0.911 5 O -0.557 6.557 6 C 0.117 3.883 7 H 0.095 0.905 8 C -0.134 4.134 9 C -0.113 4.113 10 C -0.136 4.136 11 C 0.100 3.900 12 N -0.610 5.610 13 C 0.506 3.494 14 O -0.532 6.532 15 C -0.092 4.092 16 C -0.020 4.020 17 C -0.180 4.180 18 C -0.073 4.073 19 C -0.248 4.248 20 C 0.113 3.887 21 O -0.236 6.236 22 C -0.414 4.414 23 H 0.100 0.900 24 C -0.025 4.025 25 N -0.922 5.922 26 Si 1.021 2.979 27 H -0.252 1.252 28 H -0.269 1.269 29 H -0.265 1.265 30 C -0.190 4.190 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.357 0.643 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.135 0.865 46 H 0.109 0.891 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.117 0.883 50 H 0.272 0.728 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.891 -21.295 -10.906 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.190 4.190 3 C 0.053 3.947 4 H 0.107 0.893 5 O -0.362 6.362 6 C 0.014 3.986 7 H 0.113 0.887 8 C -0.172 4.172 9 C -0.151 4.151 10 C -0.174 4.174 11 C -0.022 4.022 12 N -0.345 5.345 13 C 0.294 3.706 14 O -0.408 6.408 15 C -0.131 4.131 16 C -0.021 4.021 17 C -0.198 4.198 18 C -0.091 4.091 19 C -0.267 4.267 20 C 0.064 3.936 21 O -0.143 6.143 22 C -0.490 4.490 23 H 0.117 0.883 24 C -0.222 4.222 25 N -0.561 5.561 26 Si 0.840 3.160 27 H -0.175 1.175 28 H -0.194 1.194 29 H -0.189 1.189 30 C -0.210 4.210 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.204 0.796 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.153 0.847 46 H 0.127 0.873 47 H 0.163 0.837 48 H 0.163 0.837 49 H 0.135 0.865 50 H 0.081 0.919 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.991 -20.950 -10.847 27.952 hybrid contribution -0.681 0.508 0.964 1.285 sum 14.311 -20.442 -9.883 26.840 Atomic orbital electron populations 1.21638 0.96269 1.01438 1.00970 1.22320 0.96341 0.96742 1.03606 1.22252 0.91989 0.91510 0.88998 0.89324 1.86992 1.76851 1.56977 1.15340 1.22058 0.94684 0.82319 0.99542 0.88701 1.22008 0.97080 1.01431 0.96687 1.21473 0.94137 0.96199 1.03251 1.22007 1.01845 0.96282 0.97270 1.22123 0.78153 1.02610 0.99307 1.48104 1.07239 1.05842 1.73298 1.20771 0.86387 0.86937 0.76472 1.90838 1.17504 1.83452 1.49047 1.20743 0.96160 0.89911 1.06304 1.19174 0.96165 0.94709 0.92009 1.20924 0.99216 1.02373 0.97309 1.21116 0.95693 0.94832 0.97466 1.21270 1.04865 1.07487 0.93080 1.19855 0.93359 0.93038 0.87395 1.83937 1.51146 1.49827 1.29414 1.21866 1.14540 1.14962 0.97619 0.88311 1.26633 1.01443 1.00323 0.93795 1.70205 1.43646 1.41576 1.00678 0.84506 0.75836 0.76204 0.79464 1.17536 1.19364 1.18949 1.20151 0.99049 1.02746 0.99026 0.94197 0.91297 0.94290 0.89620 0.90379 0.79595 0.92843 0.89060 0.90867 0.90275 0.93289 0.88602 0.89029 0.88772 0.84666 0.87336 0.83665 0.83730 0.86546 0.91867 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.81 71.98 0.71 -2.45 16 2 C -0.15 -2.69 5.28 30.59 0.16 -2.53 16 3 C 0.11 2.70 1.87 30.59 0.06 2.76 16 4 H 0.09 2.85 5.99 -4.81 -0.03 2.82 16 5 O -0.56 -17.56 10.42 -125.36 -1.31 -18.87 16 6 C 0.12 2.03 2.74 44.97 0.12 2.15 16 7 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 8 C -0.13 -1.73 4.72 30.67 0.14 -1.59 16 9 C -0.11 -1.05 5.88 30.62 0.18 -0.87 16 10 C -0.14 -1.44 6.10 30.82 0.19 -1.26 16 11 C 0.10 1.18 6.36 86.51 0.55 1.73 16 12 N -0.61 -12.01 2.96 -794.20 -2.35 -14.36 16 13 C 0.51 14.46 7.41 87.66 0.65 15.11 16 14 O -0.53 -20.56 10.39 20.59 0.21 -20.35 16 15 C -0.09 -2.37 4.22 29.10 0.12 -2.25 16 16 C -0.02 -0.74 4.37 -19.88 -0.09 -0.83 16 17 C -0.18 -6.23 9.70 22.30 0.22 -6.02 16 18 C -0.07 -2.80 10.04 22.25 0.22 -2.57 16 19 C -0.25 -11.95 9.17 22.39 0.21 -11.75 16 20 C 0.11 6.25 6.65 22.58 0.15 6.40 16 21 O -0.24 -15.40 9.76 -22.74 -0.22 -15.62 16 22 C -0.41 -25.75 9.49 67.92 0.64 -25.10 16 23 H 0.10 5.69 5.20 -2.91 -0.02 5.68 16 24 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 25 N -0.92 -59.35 13.67 21.61 0.30 -59.05 16 26 Si 1.02 45.18 29.55 68.60 2.03 47.21 16 27 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 30 C -0.19 -9.12 9.64 22.39 0.22 -8.91 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.01 7.82 -2.39 -0.02 0.99 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.11 6.99 -2.39 -0.02 1.09 16 36 H 0.36 8.85 7.05 -74.06 -0.52 8.32 16 37 H 0.05 0.90 6.42 -2.39 -0.02 0.88 16 38 H 0.09 0.87 7.01 -2.39 -0.02 0.85 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 1.01 5.96 -2.39 -0.01 0.99 16 45 H 0.14 2.36 8.05 -2.39 -0.02 2.34 16 46 H 0.11 2.52 7.43 -2.39 -0.02 2.51 16 47 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 48 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 49 H 0.12 5.67 5.64 -2.91 -0.02 5.65 16 50 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 51 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -86.86 396.34 3.97 -82.88 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.40 Total: 37.17 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.92 Total: -39.00 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -2.06 Total: -73.41 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -1.31 Total: -54.84 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -86.86 3.97 -82.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912123836.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.298 kcal (2) G-P(sol) polarization free energy of solvation -86.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds