Wall clock time and date at job start Wed Apr 1 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 H 1.08995 * 109.47733 * 304.99646 * 3 2 1 5 5 O 1.42906 * 109.47414 * 65.00160 * 3 2 1 6 6 C 1.53007 * 109.47042 * 184.99856 * 3 2 1 7 7 H 1.09002 * 109.58350 * 54.12188 * 6 3 2 8 8 C 1.53192 * 109.70204 * 293.76983 * 6 3 2 9 9 C 1.53037 * 109.31150 * 185.50629 * 8 6 3 10 10 C 1.53043 * 109.53922 * 61.36548 * 9 8 6 11 11 C 1.53625 * 109.24260 * 298.51171 * 10 9 8 12 12 N 1.46924 * 109.58840 * 174.41006 * 6 3 2 13 13 C 1.34776 * 120.63020 * 353.51128 * 12 6 3 14 14 O 1.21278 * 119.99994 * 5.14635 * 13 12 6 15 15 C 1.50701 * 119.99995 * 185.14161 * 13 12 6 16 16 C 1.50707 * 109.47127 * 180.02562 * 15 13 12 17 17 C 1.38297 * 119.93216 * 89.99595 * 16 15 13 18 18 C 1.38101 * 120.07038 * 180.02562 * 17 16 15 19 19 C 1.38882 * 119.92944 * 359.97438 * 18 17 16 20 20 O 1.35745 * 120.06902 * 179.97438 * 19 18 17 21 21 C 1.34832 * 117.00211 * 5.31614 * 20 19 18 22 22 H 1.08003 * 119.99825 * 354.96451 * 21 20 19 23 23 C 1.38653 * 120.00478 * 174.96694 * 21 20 19 24 24 N 1.31556 * 119.99598 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00165 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47423 * 179.97438 * 25 23 21 27 27 H 1.48493 * 109.47378 * 300.00252 * 25 23 21 28 28 H 1.48508 * 109.47154 * 60.00263 * 25 23 21 29 29 C 1.38879 * 119.85907 * 0.27217 * 19 18 17 30 30 C 1.38099 * 119.93420 * 359.49355 * 29 19 18 31 31 H 1.09006 * 109.46877 * 60.00060 * 1 2 3 32 32 H 1.08995 * 109.47644 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47671 * 300.00235 * 1 2 3 34 34 H 1.08991 * 109.47110 * 239.99622 * 2 1 3 35 35 H 1.09006 * 109.46877 * 119.99940 * 2 1 3 36 36 H 0.96701 * 113.99867 * 59.99574 * 5 3 2 37 37 H 1.09007 * 109.49864 * 305.45461 * 8 6 3 38 38 H 1.08997 * 109.50355 * 65.52462 * 8 6 3 39 39 H 1.09008 * 109.46294 * 181.38403 * 9 8 6 40 40 H 1.09000 * 109.46353 * 301.35824 * 9 8 6 41 41 H 1.08998 * 109.49689 * 58.58693 * 10 9 8 42 42 H 1.08998 * 109.50077 * 178.67980 * 10 9 8 43 43 H 1.09009 * 109.73772 * 295.12057 * 11 10 9 44 44 H 1.08997 * 109.66880 * 174.54691 * 11 10 9 45 45 H 1.08998 * 109.47160 * 60.00697 * 15 13 12 46 46 H 1.09000 * 109.47263 * 299.99737 * 15 13 12 47 47 H 1.08005 * 119.96453 * 0.02562 * 17 16 15 48 48 H 1.07998 * 120.03620 * 180.02562 * 18 17 16 49 49 H 0.96995 * 120.00444 * 359.97438 * 24 23 21 50 50 H 1.08000 * 120.03011 * 179.72143 * 29 19 18 51 51 H 1.07998 * 119.96805 * 180.22489 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4443 -0.1257 7 1 3.8599 0.8673 -1.0021 8 6 4.1873 0.8255 1.1299 9 6 5.7103 0.9560 1.0566 10 6 6.0954 2.4363 1.0060 11 6 5.4946 3.0728 -0.2566 12 7 4.0463 2.8258 -0.2605 13 6 3.1760 3.8467 -0.3909 14 8 1.9838 3.6419 -0.3044 15 6 3.6844 5.2425 -0.6442 16 6 2.5178 6.1908 -0.7489 17 6 2.0362 6.8201 0.3845 18 6 0.9669 7.6892 0.2919 19 6 0.3755 7.9314 -0.9412 20 8 -0.6760 8.7847 -1.0354 21 6 -1.0278 9.4485 0.0842 22 1 -0.5339 9.2298 1.0194 23 6 -2.0238 10.4119 0.0350 24 7 -2.6252 10.6786 -1.1042 25 14 -2.5117 11.3310 1.5863 26 1 -3.5908 12.3005 1.2686 27 1 -2.9982 10.3637 2.6025 28 1 -1.3336 12.0601 2.1209 29 6 0.8583 7.2939 -2.0767 30 6 1.9309 6.4296 -1.9783 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.0141 1.6542 2.0139 37 1 3.8195 1.3475 2.0134 38 1 3.9145 -0.2281 1.1899 39 1 6.1572 0.4945 1.9374 40 1 6.0750 0.4553 0.1598 41 1 5.7096 2.9430 1.8906 42 1 7.1810 2.5291 0.9775 43 1 5.9439 2.6259 -1.1436 44 1 5.6822 4.1465 -0.2510 45 1 4.2514 5.2594 -1.5750 46 1 4.3289 5.5496 0.1796 47 1 2.4968 6.6317 1.3431 48 1 0.5915 8.1807 1.1773 49 1 -2.3716 10.2016 -1.9098 50 1 0.3976 7.4767 -3.0362 51 1 2.3091 5.9364 -2.8615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912131775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:25 Heat of formation + Delta-G solvation = -108.807493 kcal Electronic energy + Delta-G solvation = -31516.323361 eV Core-core repulsion = 27380.465583 eV Total energy + Delta-G solvation = -4135.857778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75661 -40.83200 -39.05173 -38.00925 -37.68442 -34.46768 -33.90977 -33.68722 -32.79898 -31.86799 -31.74315 -28.40764 -27.39464 -26.72183 -25.38825 -23.96875 -23.63946 -22.59060 -22.10101 -21.50420 -20.27786 -19.76903 -18.70687 -17.98585 -17.25955 -17.10426 -16.81486 -16.65832 -16.11690 -15.92714 -15.70375 -15.62614 -15.47436 -15.15345 -15.13934 -14.97909 -14.64546 -14.32135 -14.31480 -14.09148 -13.99239 -13.32613 -13.10507 -12.95719 -12.91503 -12.83635 -12.67879 -12.43254 -12.33589 -12.32502 -12.10003 -12.02690 -11.93992 -11.88338 -11.80727 -11.65276 -11.43060 -11.28672 -10.76549 -10.58446 -9.88663 -9.83500 -9.38068 -8.98917 -8.93993 -6.25527 0.54041 0.61376 1.46449 1.59502 1.77565 1.85863 2.11767 2.34992 2.82633 3.11374 3.32757 3.49548 3.71090 3.82696 3.89875 3.95236 3.98897 4.06945 4.12474 4.14101 4.19348 4.21815 4.26288 4.37953 4.42456 4.51699 4.57975 4.62222 4.62739 4.74230 4.79578 4.83207 4.90938 4.95804 4.98569 5.01897 5.03139 5.09145 5.19223 5.20801 5.22898 5.24247 5.34152 5.39671 5.48541 5.50710 5.69569 5.73244 5.78018 6.04864 6.28397 6.57879 6.85702 7.05130 7.49304 7.61815 8.48929 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.002504 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.098751 B =11180.414168 C =11886.999201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 C 0.114 3.886 4 H 0.085 0.915 5 O -0.553 6.553 6 C 0.116 3.884 7 H 0.088 0.912 8 C -0.132 4.132 9 C -0.115 4.115 10 C -0.133 4.133 11 C 0.100 3.900 12 N -0.610 5.610 13 C 0.502 3.498 14 O -0.534 6.534 15 C -0.079 4.079 16 C -0.135 4.135 17 C -0.058 4.058 18 C -0.241 4.241 19 C 0.114 3.886 20 O -0.254 6.254 21 C -0.488 4.488 22 H 0.088 0.912 23 C -0.045 4.045 24 N -0.917 5.917 25 Si 1.146 2.854 26 H -0.271 1.271 27 H -0.263 1.263 28 H -0.258 1.258 29 C -0.205 4.205 30 C -0.058 4.058 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.358 0.642 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.133 0.867 48 H 0.114 0.886 49 H 0.259 0.741 50 H 0.113 0.887 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.839 -24.574 4.514 34.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C 0.055 3.945 4 H 0.103 0.897 5 O -0.358 6.358 6 C 0.013 3.987 7 H 0.106 0.894 8 C -0.170 4.170 9 C -0.152 4.152 10 C -0.172 4.172 11 C -0.022 4.022 12 N -0.345 5.345 13 C 0.291 3.709 14 O -0.411 6.411 15 C -0.119 4.119 16 C -0.136 4.136 17 C -0.077 4.077 18 C -0.260 4.260 19 C 0.065 3.935 20 O -0.162 6.162 21 C -0.564 4.564 22 H 0.106 0.894 23 C -0.241 4.241 24 N -0.552 5.552 25 Si 0.961 3.039 26 H -0.195 1.195 27 H -0.187 1.187 28 H -0.182 1.182 29 C -0.224 4.224 30 C -0.076 4.076 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.205 0.795 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.141 0.859 46 H 0.135 0.865 47 H 0.151 0.849 48 H 0.131 0.869 49 H 0.067 0.933 50 H 0.131 0.869 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.731 -23.049 4.528 32.000 hybrid contribution 0.647 -1.297 -0.501 1.533 sum 22.378 -24.346 4.028 33.313 Atomic orbital electron populations 1.21640 0.96334 1.01411 1.00957 1.22323 0.96265 0.96935 1.03560 1.22182 0.91941 0.91313 0.89046 0.89712 1.86969 1.76866 1.56805 1.15202 1.22028 0.94637 0.82554 0.99486 0.89388 1.21987 0.96969 1.01349 0.96683 1.21483 0.94200 0.96446 1.03098 1.21992 1.01754 0.96068 0.97346 1.22115 0.78148 1.02737 0.99206 1.48129 1.07265 1.05788 1.73350 1.20994 0.86348 0.87212 0.76333 1.90841 1.17619 1.83523 1.49113 1.20580 0.95870 0.89333 1.06075 1.19265 1.00574 1.01092 0.92633 1.20873 0.94159 0.93892 0.98727 1.21214 1.01912 1.05953 0.96900 1.19791 0.87550 0.90947 0.95252 1.83635 1.43228 1.51661 1.37686 1.22583 1.24473 1.21823 0.87553 0.89429 1.28437 0.92493 0.95825 1.07332 1.70704 1.41887 1.42089 1.00563 0.82596 0.77520 0.75400 0.68417 1.19528 1.18733 1.18217 1.20434 1.01817 1.04056 0.96130 1.20851 0.93409 0.95012 0.98280 0.94559 0.91395 0.93940 0.90017 0.90125 0.79488 0.92299 0.89338 0.90754 0.90783 0.92626 0.88756 0.89732 0.88408 0.85856 0.86473 0.84912 0.86858 0.93259 0.86855 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.81 71.98 0.71 -2.33 16 2 C -0.15 -2.53 5.28 30.59 0.16 -2.37 16 3 C 0.11 2.55 1.87 30.60 0.06 2.61 16 4 H 0.09 2.64 5.99 -4.68 -0.03 2.62 16 5 O -0.55 -15.33 10.42 -125.35 -1.31 -16.64 16 6 C 0.12 1.79 2.74 44.98 0.12 1.92 16 7 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 8 C -0.13 -1.36 4.72 30.67 0.14 -1.21 16 9 C -0.11 -0.79 5.88 30.62 0.18 -0.61 16 10 C -0.13 -0.98 6.10 30.82 0.19 -0.80 16 11 C 0.10 0.92 6.36 86.51 0.55 1.47 16 12 N -0.61 -10.38 2.97 -794.18 -2.35 -12.74 16 13 C 0.50 12.71 7.41 87.66 0.65 13.36 16 14 O -0.53 -19.07 10.39 20.61 0.21 -18.85 16 15 C -0.08 -1.74 4.22 29.10 0.12 -1.61 16 16 C -0.13 -4.52 4.38 -19.83 -0.09 -4.61 16 17 C -0.06 -2.26 9.69 22.25 0.22 -2.05 16 18 C -0.24 -11.69 9.17 22.39 0.21 -11.48 16 19 C 0.11 6.17 6.65 22.58 0.15 6.32 16 20 O -0.25 -16.17 9.16 -22.70 -0.21 -16.38 16 21 C -0.49 -30.43 9.49 67.92 0.64 -29.78 16 22 H 0.09 5.14 5.20 -2.91 -0.02 5.12 16 23 C -0.05 -2.73 5.49 84.83 0.47 -2.26 16 24 N -0.92 -59.93 13.70 21.61 0.30 -59.64 16 25 Si 1.15 50.58 29.92 68.60 2.05 52.63 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 28 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 29 C -0.21 -9.46 9.99 22.39 0.22 -9.24 16 30 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 1.03 7.82 -2.39 -0.02 1.01 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.01 7.00 -2.38 -0.02 0.99 16 36 H 0.36 7.29 7.06 -74.06 -0.52 6.77 16 37 H 0.06 0.76 6.44 -2.38 -0.02 0.75 16 38 H 0.09 0.66 7.02 -2.39 -0.02 0.65 16 39 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 44 H 0.10 0.72 5.96 -2.39 -0.01 0.70 16 45 H 0.12 1.92 8.05 -2.39 -0.02 1.90 16 46 H 0.12 1.97 7.43 -2.39 -0.02 1.95 16 47 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 48 H 0.11 5.67 5.64 -2.91 -0.02 5.65 16 49 H 0.26 17.66 7.97 -92.71 -0.74 16.92 16 50 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 51 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -85.87 395.84 4.05 -81.82 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.44 Total: 34.37 kcal Atomic # 6 Polarization: -49.49 SS G_CDS: 4.92 Total: -44.58 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.06 Total: -72.38 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -1.30 Total: -51.87 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -85.87 4.05 -81.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912131775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.986 kcal (2) G-P(sol) polarization free energy of solvation -85.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds