Wall clock time and date at job start Wed Apr 1 2020 04:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46917 * 2 1 4 4 N 1.46900 * 109.46845 * 240.00131 * 2 1 3 5 5 C 1.46895 * 111.00189 * 85.00123 * 4 2 1 6 6 H 1.09001 * 112.86621 * 336.26280 * 5 4 2 7 7 C 1.53867 * 113.71484 * 107.59664 * 5 4 2 8 8 C 1.53868 * 87.15987 * 139.62037 * 7 5 4 9 9 H 1.08998 * 113.71573 * 220.38556 * 8 7 5 10 10 O 1.42897 * 113.63907 * 89.42325 * 8 7 5 11 11 C 1.53306 * 113.63602 * 204.99958 * 5 4 2 12 12 C 1.52830 * 113.64132 * 334.98632 * 11 5 4 13 13 C 1.53272 * 108.87944 * 184.13349 * 12 11 5 14 14 O 1.42891 * 109.33102 * 304.69747 * 13 12 11 15 15 C 1.42903 * 114.35859 * 62.99254 * 14 13 12 16 16 C 1.52828 * 113.64354 * 105.45395 * 11 5 4 17 17 C 1.50703 * 109.46965 * 120.00382 * 2 1 3 18 18 C 1.38300 * 119.93279 * 79.72413 * 17 2 1 19 19 C 1.38098 * 120.06397 * 179.72343 * 18 17 2 20 20 C 1.38871 * 119.93551 * 0.55135 * 19 18 17 21 21 O 1.35755 * 120.07203 * 179.74985 * 20 19 18 22 22 C 1.34829 * 117.00047 * 174.44087 * 21 20 19 23 23 H 1.07997 * 120.00190 * 5.05038 * 22 21 20 24 24 C 1.38652 * 119.99996 * 185.05516 * 22 21 20 25 25 N 1.31557 * 119.99637 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00234 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47053 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47133 * 119.99533 * 26 24 22 29 29 H 1.48502 * 109.47180 * 240.00072 * 26 24 22 30 30 C 1.38882 * 119.86157 * 359.72000 * 20 19 18 31 31 C 1.38103 * 119.92743 * 0.02562 * 30 20 19 32 32 H 1.09003 * 109.47116 * 299.99745 * 1 2 3 33 33 H 1.09002 * 109.47194 * 59.99718 * 1 2 3 34 34 H 1.09002 * 109.47618 * 180.02562 * 1 2 3 35 35 H 1.00904 * 110.99608 * 208.95918 * 4 2 1 36 36 H 1.08993 * 113.59881 * 25.05068 * 7 5 4 37 37 H 1.08998 * 113.59768 * 254.18564 * 7 5 4 38 38 H 0.96702 * 114.00118 * 82.64551 * 10 8 7 39 39 H 1.08998 * 109.57124 * 303.95098 * 12 11 5 40 40 H 1.08992 * 109.56963 * 64.31973 * 12 11 5 41 41 H 1.09002 * 109.48800 * 184.74135 * 13 12 11 42 42 H 1.09005 * 109.51392 * 64.67485 * 13 12 11 43 43 H 1.08997 * 109.49200 * 177.04949 * 15 14 13 44 44 H 1.08996 * 109.51849 * 56.97583 * 15 14 13 45 45 H 1.09001 * 109.56626 * 295.67994 * 16 11 5 46 46 H 1.08995 * 109.57472 * 55.92106 * 16 11 5 47 47 H 1.08002 * 119.96113 * 0.02562 * 18 17 2 48 48 H 1.08009 * 120.03060 * 180.27144 * 19 18 17 49 49 H 0.97007 * 119.99611 * 180.02562 * 25 24 22 50 50 H 1.07994 * 120.03538 * 179.97438 * 30 20 19 51 51 H 1.08007 * 119.96257 * 180.02562 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 1 1.4077 1.0729 -2.2479 7 6 3.5152 0.6154 -2.7474 8 6 3.0605 0.4823 -4.2114 9 1 3.8003 0.0121 -4.8591 10 8 2.5312 1.6914 -4.7591 11 6 1.9847 -0.4850 -3.7034 12 6 2.4402 -1.9434 -3.6681 13 6 2.3963 -2.5113 -5.0911 14 8 1.0855 -2.3331 -5.6312 15 6 0.6869 -0.9681 -5.7729 16 6 0.6306 -0.3098 -4.3899 17 6 2.0323 -0.7105 1.2305 18 6 2.0607 -2.0928 1.2659 19 6 2.5259 -2.7466 2.3899 20 6 2.9545 -2.0149 3.4896 21 8 3.4075 -2.6548 4.5978 22 6 3.9153 -1.8874 5.5832 23 1 3.8738 -0.8110 5.5052 24 6 4.4909 -2.4800 6.6967 25 7 4.5411 -3.7912 6.7919 26 14 5.1938 -1.4168 8.0624 27 1 5.0136 0.0161 7.7166 28 1 4.4860 -1.7124 9.3339 29 1 6.6410 -1.7088 8.2220 30 6 2.9195 -0.6270 3.4530 31 6 2.4582 0.0211 2.3241 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 2.9172 -1.1206 -1.0287 36 1 4.2665 -0.1181 -2.4554 37 1 3.7837 1.6333 -2.4647 38 1 3.2053 2.3054 -5.0812 39 1 3.4589 -1.9986 -3.2843 40 1 1.7742 -2.5184 -3.0249 41 1 2.6382 -3.5738 -5.0662 42 1 3.1211 -1.9877 -5.7146 43 1 -0.2980 -0.9232 -6.2375 44 1 1.4082 -0.4411 -6.3975 45 1 -0.1465 -0.7847 -3.7910 46 1 0.4106 0.7522 -4.4978 47 1 1.7234 -2.6613 0.4118 48 1 2.5519 -3.8261 2.4153 49 1 4.9434 -4.2058 7.5712 50 1 3.2518 -0.0552 4.3068 51 1 2.4311 1.1004 2.2949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927153617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:17 Heat of formation + Delta-G solvation = -76.782053 kcal Electronic energy + Delta-G solvation = -31041.655893 eV Core-core repulsion = 26907.186842 eV Total energy + Delta-G solvation = -4134.469051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.18086 -39.17412 -38.09145 -37.23708 -35.75650 -34.21995 -32.26684 -31.48714 -31.01554 -30.23580 -29.36523 -27.93143 -25.43630 -24.99541 -23.96632 -23.82369 -22.30349 -21.94154 -21.20296 -19.94584 -18.69130 -17.96020 -17.47237 -17.05676 -16.63319 -16.18022 -15.61930 -15.37894 -15.08151 -14.79145 -14.63929 -14.51934 -14.27941 -13.98264 -13.67118 -13.65061 -13.46266 -13.08838 -12.79588 -12.72696 -12.56000 -12.35865 -12.30571 -12.17708 -11.88937 -11.68691 -11.63354 -11.44292 -11.33922 -11.23223 -11.04927 -10.73545 -10.70055 -10.62962 -10.44394 -10.32899 -10.16697 -10.01133 -9.48174 -9.34795 -8.84817 -8.29091 -8.18237 -7.19076 -6.47064 -4.05896 2.21228 2.28980 3.10247 3.11764 3.17266 3.62671 3.73415 3.94677 4.09611 4.26434 4.35748 4.49776 4.55129 4.73825 4.83610 4.89867 4.92609 5.07192 5.11019 5.13990 5.23031 5.23387 5.30083 5.33890 5.45002 5.48387 5.52514 5.57786 5.67882 5.68518 5.70431 5.79347 5.85628 5.90451 5.97329 6.01684 6.05438 6.18630 6.22670 6.23296 6.39728 6.48149 6.71977 6.86651 7.03238 7.04791 7.07055 7.26061 7.27963 7.40877 7.42493 7.54376 7.82075 7.98176 8.98766 9.69272 10.71030 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.002097 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.638986 B =13352.001731 C =13695.576151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.144 3.856 3 H 0.040 0.960 4 N -0.669 5.669 5 C 0.089 3.911 6 H 0.098 0.902 7 C -0.200 4.200 8 C 0.084 3.916 9 H 0.065 0.935 10 O -0.547 6.547 11 C -0.058 4.058 12 C -0.123 4.123 13 C 0.061 3.939 14 O -0.385 6.385 15 C 0.065 3.935 16 C -0.131 4.131 17 C -0.192 4.192 18 C -0.055 4.055 19 C -0.195 4.195 20 C 0.155 3.845 21 O -0.178 6.178 22 C -0.391 4.391 23 H 0.092 0.908 24 C 0.039 3.961 25 N -0.862 5.862 26 Si 0.941 3.059 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.276 1.276 30 C -0.235 4.235 31 C -0.065 4.065 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.346 0.654 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.378 0.622 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 9.284 -23.423 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.035 3.965 3 H 0.058 0.942 4 N -0.300 5.300 5 C -0.022 4.022 6 H 0.116 0.884 7 C -0.240 4.240 8 C 0.024 3.976 9 H 0.083 0.917 10 O -0.352 6.352 11 C -0.059 4.059 12 C -0.161 4.161 13 C -0.016 4.016 14 O -0.304 6.304 15 C -0.012 4.012 16 C -0.168 4.168 17 C -0.193 4.193 18 C -0.074 4.074 19 C -0.214 4.214 20 C 0.101 3.899 21 O -0.082 6.082 22 C -0.468 4.468 23 H 0.109 0.891 24 C -0.166 4.166 25 N -0.497 5.497 26 Si 0.765 3.235 27 H -0.191 1.191 28 H -0.201 1.201 29 H -0.201 1.201 30 C -0.254 4.254 31 C -0.084 4.084 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.167 0.833 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.225 0.775 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.439 8.174 -23.211 25.006 hybrid contribution 1.981 1.731 1.031 2.826 sum -2.458 9.905 -22.180 24.416 Atomic orbital electron populations 1.21780 0.94606 1.02279 1.00290 1.20141 0.95039 0.94424 0.86900 0.94239 1.60495 1.33407 1.31989 1.04072 1.22923 0.94949 0.94280 0.90070 0.88399 1.24377 0.99100 1.02665 0.97860 1.22659 0.95885 0.86324 0.92684 0.91745 1.86444 1.37123 1.30015 1.81608 1.21801 0.94540 0.94077 0.95464 1.21827 1.02515 0.93990 0.97749 1.22627 0.84428 1.01254 0.93304 1.87893 1.32873 1.25708 1.83883 1.22552 1.00088 0.82311 0.96229 1.21923 0.96727 1.01751 0.96439 1.19271 1.10132 0.93787 0.96130 1.20486 0.97002 0.93359 0.96546 1.20255 1.08784 0.99416 0.92960 1.19425 0.91967 0.90910 0.87569 1.83982 1.67250 1.35089 1.21832 1.21363 1.37875 0.90702 0.96823 0.89076 1.25291 0.96771 0.96321 0.98174 1.70051 1.41651 1.08712 1.29300 0.85653 0.78701 0.79239 0.79866 1.19146 1.20118 1.20140 1.21117 1.09830 0.94436 1.00009 1.20580 0.96972 0.98071 0.92795 0.92806 0.93581 0.91994 0.83346 0.89188 0.91048 0.77487 0.91028 0.88732 0.88874 0.93859 0.89325 0.93450 0.90899 0.90159 0.86308 0.86612 0.92064 0.85686 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.38 37.16 0.35 -1.31 16 2 C 0.14 1.88 2.67 -68.86 -0.18 1.69 16 3 H 0.04 0.52 7.70 -51.93 -0.40 0.12 16 4 N -0.67 -7.59 4.82 -100.32 -0.48 -8.08 16 5 C 0.09 0.88 3.28 -67.11 -0.22 0.66 16 6 H 0.10 1.08 7.44 -51.93 -0.39 0.69 16 7 C -0.20 -1.73 7.19 -25.83 -0.19 -1.92 16 8 C 0.08 0.66 4.52 -26.11 -0.12 0.55 16 9 H 0.06 0.46 7.63 -51.93 -0.40 0.06 16 10 O -0.55 -4.17 12.20 -35.23 -0.43 -4.60 16 11 C -0.06 -0.52 0.73 -154.36 -0.11 -0.63 16 12 C -0.12 -1.10 4.50 -26.68 -0.12 -1.22 16 13 C 0.06 0.53 6.78 37.30 0.25 0.78 16 14 O -0.38 -4.17 10.72 -35.23 -0.38 -4.54 16 15 C 0.06 0.59 6.78 37.30 0.25 0.85 16 16 C -0.13 -1.24 5.13 -26.68 -0.14 -1.38 16 17 C -0.19 -3.12 4.71 -104.58 -0.49 -3.61 16 18 C -0.06 -0.96 9.00 -39.61 -0.36 -1.31 16 19 C -0.19 -4.05 9.99 -39.40 -0.39 -4.44 16 20 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 21 O -0.18 -5.06 9.76 0.04 0.00 -5.06 16 22 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16 23 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 24 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 25 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 26 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 29 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 30 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 31 C -0.07 -1.17 9.66 -39.61 -0.38 -1.55 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.52 7.74 -51.93 -0.40 0.12 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.35 4.08 7.39 -39.29 -0.29 3.79 16 36 H 0.09 0.77 7.33 -51.93 -0.38 0.39 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.38 1.41 9.12 45.56 0.42 1.82 16 39 H 0.07 0.59 7.35 -51.93 -0.38 0.20 16 40 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.34 7.68 -51.93 -0.40 -0.06 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.78 7.12 -51.93 -0.37 0.41 16 47 H 0.12 1.81 7.72 -52.49 -0.41 1.41 16 48 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 49 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 51 H 0.10 1.60 8.03 -52.48 -0.42 1.18 16 LS Contribution 401.54 15.07 6.05 6.05 Total: -1.00 -30.91 401.54 -9.09 -40.00 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.31 Total: 9.71 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -2.27 Total: -24.43 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.27 Total: -32.55 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.81 Total: -14.21 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.91 -9.09 -40.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927153617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.781 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds