Wall clock time and date at job start Wed Apr 1 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47462 * 2 1 4 4 N 1.46903 * 109.46876 * 240.00087 * 2 1 3 5 5 C 1.46900 * 110.99915 * 85.00194 * 4 2 1 6 6 H 1.09003 * 112.86454 * 23.73093 * 5 4 2 7 7 C 1.53866 * 113.63338 * 252.34813 * 5 4 2 8 8 C 1.53864 * 87.16306 * 220.39683 * 7 5 4 9 9 H 1.08994 * 113.71636 * 270.57162 * 8 7 5 10 10 O 1.42894 * 113.63474 * 139.60760 * 8 7 5 11 11 C 1.53306 * 86.94635 * 25.09293 * 8 7 5 12 12 C 1.52831 * 113.64189 * 89.59305 * 11 8 7 13 13 C 1.53265 * 108.88443 * 184.13348 * 12 11 8 14 14 O 1.42895 * 109.32843 * 304.69614 * 13 12 11 15 15 C 1.42895 * 114.36077 * 62.99019 * 14 13 12 16 16 C 1.52826 * 113.64298 * 220.05090 * 11 8 7 17 17 C 1.50702 * 109.47323 * 119.99943 * 2 1 3 18 18 C 1.38297 * 119.93318 * 259.99860 * 17 2 1 19 19 C 1.38095 * 120.07013 * 179.97438 * 18 17 2 20 20 C 1.38878 * 119.92880 * 0.02562 * 19 18 17 21 21 O 1.35760 * 120.06868 * 179.97438 * 20 19 18 22 22 C 1.34831 * 116.99715 * 354.46842 * 21 20 19 23 23 H 1.07997 * 120.00242 * 5.05103 * 22 21 20 24 24 C 1.38656 * 119.99822 * 185.05388 * 22 21 20 25 25 N 1.31551 * 119.99935 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99966 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47105 * 60.00161 * 26 24 22 28 28 H 1.48497 * 109.46965 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47737 * 300.00333 * 26 24 22 30 30 C 1.38878 * 119.86540 * 359.97438 * 20 19 18 31 31 C 1.38096 * 119.92779 * 359.97438 * 30 20 19 32 32 H 1.09004 * 109.47081 * 299.99947 * 1 2 3 33 33 H 1.08996 * 109.47215 * 59.99997 * 1 2 3 34 34 H 1.08995 * 109.47540 * 180.02562 * 1 2 3 35 35 H 1.00895 * 110.99802 * 321.04319 * 4 2 1 36 36 H 1.08993 * 113.60303 * 334.97283 * 7 5 4 37 37 H 1.09004 * 113.59944 * 105.83340 * 7 5 4 38 38 H 0.96702 * 113.99951 * 82.63971 * 10 8 7 39 39 H 1.09000 * 109.56644 * 303.94807 * 12 11 8 40 40 H 1.08996 * 109.56936 * 64.31391 * 12 11 8 41 41 H 1.08997 * 109.49648 * 184.73647 * 13 12 11 42 42 H 1.09007 * 109.52157 * 64.66548 * 13 12 11 43 43 H 1.08999 * 109.49341 * 177.05517 * 15 14 13 44 44 H 1.08995 * 109.49458 * 56.96356 * 15 14 13 45 45 H 1.09005 * 109.57040 * 295.68588 * 16 11 8 46 46 H 1.09001 * 109.57026 * 55.93073 * 16 11 8 47 47 H 1.08000 * 119.96365 * 0.25322 * 18 17 2 48 48 H 1.07998 * 120.03481 * 179.97438 * 19 18 17 49 49 H 0.96999 * 120.00238 * 179.97438 * 25 24 22 50 50 H 1.08001 * 120.03376 * 179.97438 * 30 20 19 51 51 H 1.08002 * 119.96622 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 1 2.1670 1.2682 -2.0506 7 6 0.9927 -0.0355 -3.4021 8 6 2.0708 0.2258 -4.4683 9 1 2.1522 1.2722 -4.7622 10 8 1.9975 -0.6609 -5.5864 11 6 3.0998 -0.1982 -3.4139 12 6 3.3988 -1.6970 -3.4174 13 6 4.3547 -2.0148 -2.2622 14 8 5.5212 -1.1973 -2.3751 15 6 5.2712 0.2052 -2.2637 16 6 4.3690 0.6530 -3.4191 17 6 2.0323 -0.7104 1.2305 18 6 2.4586 0.0212 2.3240 19 6 2.9190 -0.6269 3.4531 20 6 2.9542 -2.0148 3.4897 21 8 3.4067 -2.6548 4.5981 22 6 3.9141 -1.8873 5.5838 23 1 3.8726 -0.8109 5.5057 24 6 4.4893 -2.4800 6.6975 25 7 4.5395 -3.7911 6.7927 26 14 5.1929 -1.4167 8.0627 27 1 4.1187 -0.5603 8.6266 28 1 5.7449 -2.2861 9.1326 29 1 6.2737 -0.5585 7.5148 30 6 2.5254 -2.7466 2.3900 31 6 2.0651 -2.0926 1.2642 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.4495 -1.4979 -1.4100 36 1 0.6184 -1.0591 -3.4016 37 1 0.1952 0.7076 -3.3967 38 1 1.3499 -0.3984 -6.2549 39 1 2.4713 -2.2546 -3.2876 40 1 3.8643 -1.9742 -4.3632 41 1 4.6412 -3.0655 -2.3057 42 1 3.8589 -1.8119 -1.3129 43 1 6.2155 0.7477 -2.3084 44 1 4.7767 0.4123 -1.3147 45 1 4.8941 0.5199 -4.3650 46 1 4.1050 1.7030 -3.2926 47 1 2.4272 1.1003 2.2964 48 1 3.2522 -0.0551 4.3066 49 1 4.9421 -4.2058 7.5717 50 1 2.5520 -3.8260 2.4153 51 1 1.7319 -2.6611 0.4085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927153631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:26 Heat of formation + Delta-G solvation = -72.864849 kcal Electronic energy + Delta-G solvation = -31749.644288 eV Core-core repulsion = 27615.345100 eV Total energy + Delta-G solvation = -4134.299188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.15852 -39.09159 -37.75668 -37.27437 -35.77598 -34.33631 -32.22747 -31.31298 -30.82050 -30.20799 -29.46856 -27.88138 -25.38512 -24.73969 -23.81402 -23.58165 -22.52858 -21.75332 -21.33196 -20.11621 -18.57391 -17.92410 -17.64146 -16.96364 -16.55505 -15.75860 -15.53595 -15.27139 -14.91456 -14.71619 -14.49666 -14.33680 -14.18699 -13.93269 -13.58113 -13.56116 -13.39707 -13.17037 -13.11861 -12.74044 -12.69593 -12.44547 -12.20696 -12.12508 -11.81828 -11.65113 -11.42205 -11.26363 -11.18988 -11.14988 -11.06505 -10.72824 -10.61604 -10.58870 -10.43809 -10.40257 -10.33484 -9.82201 -9.29929 -9.23230 -8.79252 -8.26071 -8.12236 -7.11331 -6.41637 -4.00462 2.26784 2.36184 3.14559 3.16083 3.18690 3.73437 3.99353 4.08980 4.16102 4.22638 4.27173 4.51052 4.56981 4.69675 4.95306 4.99898 5.04398 5.11711 5.13147 5.13847 5.29365 5.34100 5.36102 5.39594 5.43545 5.52505 5.64228 5.66433 5.69598 5.71656 5.77380 5.81040 5.84709 5.92706 5.95867 6.08205 6.10240 6.15690 6.19188 6.25806 6.45463 6.50769 6.74432 6.88335 7.02471 7.10624 7.31044 7.32924 7.35820 7.45079 7.45319 7.48910 7.87080 8.03369 9.04061 9.75154 10.76520 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.002526 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.809773 B =11080.040001 C =11665.003948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.141 3.859 3 H 0.074 0.926 4 N -0.660 5.660 5 C 0.080 3.920 6 H 0.097 0.903 7 C -0.196 4.196 8 C 0.084 3.916 9 H 0.079 0.921 10 O -0.553 6.553 11 C -0.057 4.057 12 C -0.104 4.104 13 C 0.050 3.950 14 O -0.387 6.387 15 C 0.068 3.932 16 C -0.138 4.138 17 C -0.167 4.167 18 C -0.068 4.068 19 C -0.233 4.233 20 C 0.154 3.846 21 O -0.179 6.179 22 C -0.391 4.391 23 H 0.090 0.910 24 C 0.039 3.961 25 N -0.864 5.864 26 Si 0.940 3.060 27 H -0.271 1.271 28 H -0.278 1.278 29 H -0.270 1.270 30 C -0.193 4.193 31 C -0.054 4.054 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.343 0.657 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.373 0.627 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.125 0.875 49 H 0.270 0.730 50 H 0.114 0.886 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 10.369 -21.835 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.032 3.968 3 H 0.093 0.907 4 N -0.289 5.289 5 C -0.031 4.031 6 H 0.115 0.885 7 C -0.235 4.235 8 C 0.024 3.976 9 H 0.096 0.904 10 O -0.357 6.357 11 C -0.058 4.058 12 C -0.142 4.142 13 C -0.027 4.027 14 O -0.305 6.305 15 C -0.009 4.009 16 C -0.175 4.175 17 C -0.169 4.169 18 C -0.086 4.086 19 C -0.252 4.252 20 C 0.100 3.900 21 O -0.083 6.083 22 C -0.468 4.468 23 H 0.108 0.892 24 C -0.165 4.165 25 N -0.499 5.499 26 Si 0.764 3.236 27 H -0.196 1.196 28 H -0.203 1.203 29 H -0.195 1.195 30 C -0.213 4.213 31 C -0.073 4.073 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.220 0.780 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.120 0.880 48 H 0.142 0.858 49 H 0.080 0.920 50 H 0.132 0.868 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.533 9.625 -21.093 23.836 hybrid contribution -1.396 1.196 0.132 1.843 sum -6.929 10.821 -20.961 24.586 Atomic orbital electron populations 1.22513 0.97203 1.02117 1.01469 1.20278 0.91861 0.96548 0.88097 0.90732 1.60553 1.56898 1.08761 1.02676 1.22864 0.94466 0.96839 0.88953 0.88459 1.24407 0.97967 1.02708 0.98437 1.23218 0.96601 0.92829 0.84928 0.90371 1.86560 1.63808 1.52057 1.33295 1.21884 0.93524 0.97202 0.93205 1.21533 1.00035 0.92924 0.99660 1.22938 0.86171 0.94004 0.99582 1.87835 1.32400 1.16453 1.93857 1.22442 0.98869 0.82487 0.97142 1.22108 0.96217 0.98747 1.00463 1.19034 1.09301 0.93480 0.95066 1.20514 0.97316 0.97979 0.92831 1.21096 1.09675 0.94416 1.00011 1.19385 0.92082 0.90906 0.87599 1.83981 1.67430 1.35025 1.21856 1.21255 1.38068 0.90627 0.96807 0.89216 1.25268 0.96775 0.96287 0.98165 1.70024 1.41713 1.08717 1.29432 0.85805 0.79283 0.78942 0.79542 1.19578 1.20298 1.19505 1.20202 1.08788 0.99310 0.92951 1.20280 0.97776 0.93355 0.95854 0.92006 0.93425 0.92428 0.83659 0.89076 0.91507 0.78004 0.91408 0.91625 0.90219 0.88816 0.89840 0.92316 0.91297 0.91399 0.87952 0.85776 0.92014 0.86776 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.14 37.15 0.34 -1.44 16 2 C 0.14 1.63 2.78 -68.86 -0.19 1.44 16 3 H 0.07 0.85 7.32 -51.93 -0.38 0.46 16 4 N -0.66 -6.70 2.85 -100.30 -0.29 -6.98 16 5 C 0.08 0.69 3.35 -67.09 -0.22 0.46 16 6 H 0.10 0.82 7.36 -51.93 -0.38 0.44 16 7 C -0.20 -1.44 7.18 -25.83 -0.19 -1.63 16 8 C 0.08 0.65 4.67 -26.12 -0.12 0.53 16 9 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 10 O -0.55 -4.59 12.75 -35.23 -0.45 -5.04 16 11 C -0.06 -0.54 0.75 -154.36 -0.12 -0.65 16 12 C -0.10 -1.14 4.22 -26.68 -0.11 -1.25 16 13 C 0.05 0.64 6.67 37.29 0.25 0.89 16 14 O -0.39 -5.59 10.72 -35.23 -0.38 -5.97 16 15 C 0.07 0.80 6.78 37.30 0.25 1.05 16 16 C -0.14 -1.33 5.33 -26.68 -0.14 -1.47 16 17 C -0.17 -2.62 4.96 -104.58 -0.52 -3.14 16 18 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 19 C -0.23 -4.99 9.17 -39.40 -0.36 -5.35 16 20 C 0.15 3.70 6.65 -39.11 -0.26 3.44 16 21 O -0.18 -5.15 9.76 0.02 0.00 -5.15 16 22 C -0.39 -11.00 9.49 30.89 0.29 -10.70 16 23 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 24 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 25 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 26 Si 0.94 20.67 29.55 -169.99 -5.02 15.64 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 30 C -0.19 -4.03 9.99 -39.40 -0.39 -4.42 16 31 C -0.05 -0.91 9.32 -39.61 -0.37 -1.28 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 35 H 0.34 3.36 6.84 -39.29 -0.27 3.09 16 36 H 0.09 0.73 7.33 -51.93 -0.38 0.35 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.37 1.54 9.12 45.56 0.42 1.95 16 39 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 40 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.30 5.97 -51.93 -0.31 0.99 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 47 H 0.10 1.54 8.03 -52.49 -0.42 1.11 16 48 H 0.12 2.69 5.64 -52.49 -0.30 2.40 16 49 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 51 H 0.11 1.52 7.24 -52.49 -0.38 1.14 16 LS Contribution 398.69 15.07 6.01 6.01 Total: -1.00 -31.81 398.69 -8.93 -40.74 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.22 Total: 9.65 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -2.34 Total: -24.12 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.47 Total: -31.77 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.83 Total: -16.16 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.81 -8.93 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927153631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.121 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds