Wall clock time and date at job start Wed Apr 1 2020 04:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47462 * 2 1 4 4 N 1.46903 * 109.46876 * 240.00087 * 2 1 3 5 5 C 1.46900 * 110.99915 * 85.00194 * 4 2 1 6 6 H 1.09003 * 112.86454 * 23.73093 * 5 4 2 7 7 C 1.53866 * 113.63338 * 252.34813 * 5 4 2 8 8 C 1.53864 * 87.16306 * 220.39683 * 7 5 4 9 9 H 1.08994 * 113.71636 * 270.57162 * 8 7 5 10 10 O 1.42894 * 113.63474 * 139.60760 * 8 7 5 11 11 C 1.53306 * 86.94635 * 25.09293 * 8 7 5 12 12 C 1.52831 * 113.64189 * 89.59305 * 11 8 7 13 13 C 1.53265 * 108.88443 * 184.13348 * 12 11 8 14 14 O 1.42895 * 109.32843 * 304.69614 * 13 12 11 15 15 C 1.42895 * 114.36077 * 62.99019 * 14 13 12 16 16 C 1.52826 * 113.64298 * 220.05090 * 11 8 7 17 17 C 1.50702 * 109.47323 * 119.99943 * 2 1 3 18 18 C 1.38297 * 119.93318 * 259.99860 * 17 2 1 19 19 C 1.38095 * 120.07013 * 179.97438 * 18 17 2 20 20 C 1.38878 * 119.92880 * 0.02562 * 19 18 17 21 21 O 1.35760 * 120.06868 * 179.97438 * 20 19 18 22 22 C 1.34831 * 116.99715 * 354.46842 * 21 20 19 23 23 H 1.07997 * 120.00242 * 5.05103 * 22 21 20 24 24 C 1.38656 * 119.99822 * 185.05388 * 22 21 20 25 25 N 1.31551 * 119.99935 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99966 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47105 * 60.00161 * 26 24 22 28 28 H 1.48497 * 109.46965 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47737 * 300.00333 * 26 24 22 30 30 C 1.38878 * 119.86540 * 359.97438 * 20 19 18 31 31 C 1.38096 * 119.92779 * 359.97438 * 30 20 19 32 32 H 1.09004 * 109.47081 * 299.99947 * 1 2 3 33 33 H 1.08996 * 109.47215 * 59.99997 * 1 2 3 34 34 H 1.08995 * 109.47540 * 180.02562 * 1 2 3 35 35 H 1.00895 * 110.99802 * 321.04319 * 4 2 1 36 36 H 1.08993 * 113.60303 * 334.97283 * 7 5 4 37 37 H 1.09004 * 113.59944 * 105.83340 * 7 5 4 38 38 H 0.96702 * 113.99951 * 82.63971 * 10 8 7 39 39 H 1.09000 * 109.56644 * 303.94807 * 12 11 8 40 40 H 1.08996 * 109.56936 * 64.31391 * 12 11 8 41 41 H 1.08997 * 109.49648 * 184.73647 * 13 12 11 42 42 H 1.09007 * 109.52157 * 64.66548 * 13 12 11 43 43 H 1.08999 * 109.49341 * 177.05517 * 15 14 13 44 44 H 1.08995 * 109.49458 * 56.96356 * 15 14 13 45 45 H 1.09005 * 109.57040 * 295.68588 * 16 11 8 46 46 H 1.09001 * 109.57026 * 55.93073 * 16 11 8 47 47 H 1.08000 * 119.96365 * 0.25322 * 18 17 2 48 48 H 1.07998 * 120.03481 * 179.97438 * 19 18 17 49 49 H 0.96999 * 120.00238 * 179.97438 * 25 24 22 50 50 H 1.08001 * 120.03376 * 179.97438 * 30 20 19 51 51 H 1.08002 * 119.96622 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 1 2.1670 1.2682 -2.0506 7 6 0.9927 -0.0355 -3.4021 8 6 2.0708 0.2258 -4.4683 9 1 2.1522 1.2722 -4.7622 10 8 1.9975 -0.6609 -5.5864 11 6 3.0998 -0.1982 -3.4139 12 6 3.3988 -1.6970 -3.4174 13 6 4.3547 -2.0148 -2.2622 14 8 5.5212 -1.1973 -2.3751 15 6 5.2712 0.2052 -2.2637 16 6 4.3690 0.6530 -3.4191 17 6 2.0323 -0.7104 1.2305 18 6 2.4586 0.0212 2.3240 19 6 2.9190 -0.6269 3.4531 20 6 2.9542 -2.0148 3.4897 21 8 3.4067 -2.6548 4.5981 22 6 3.9141 -1.8873 5.5838 23 1 3.8726 -0.8109 5.5057 24 6 4.4893 -2.4800 6.6975 25 7 4.5395 -3.7911 6.7927 26 14 5.1929 -1.4167 8.0627 27 1 4.1187 -0.5603 8.6266 28 1 5.7449 -2.2861 9.1326 29 1 6.2737 -0.5585 7.5148 30 6 2.5254 -2.7466 2.3900 31 6 2.0651 -2.0926 1.2642 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.4495 -1.4979 -1.4100 36 1 0.6184 -1.0591 -3.4016 37 1 0.1952 0.7076 -3.3967 38 1 1.3499 -0.3984 -6.2549 39 1 2.4713 -2.2546 -3.2876 40 1 3.8643 -1.9742 -4.3632 41 1 4.6412 -3.0655 -2.3057 42 1 3.8589 -1.8119 -1.3129 43 1 6.2155 0.7477 -2.3084 44 1 4.7767 0.4123 -1.3147 45 1 4.8941 0.5199 -4.3650 46 1 4.1050 1.7030 -3.2926 47 1 2.4272 1.1003 2.2964 48 1 3.2522 -0.0551 4.3066 49 1 4.9421 -4.2058 7.5717 50 1 2.5520 -3.8260 2.4153 51 1 1.7319 -2.6611 0.4085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927153631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:25 Heat of formation + Delta-G solvation = -94.853754 kcal Electronic energy + Delta-G solvation = -31750.597799 eV Core-core repulsion = 27615.345100 eV Total energy + Delta-G solvation = -4135.252699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.89723 -40.73373 -38.89255 -38.50229 -36.76487 -35.31017 -34.19372 -32.20536 -31.75867 -31.70949 -30.53974 -29.12142 -27.32995 -25.52573 -24.62963 -24.47864 -23.88391 -23.13792 -22.09722 -21.46691 -19.72698 -19.39955 -18.75248 -18.25547 -17.43801 -16.78668 -16.53109 -16.46325 -16.21900 -15.88900 -15.79876 -15.49650 -15.40392 -15.21802 -14.97231 -14.70183 -14.46926 -14.28102 -14.00878 -13.94540 -13.78494 -13.62230 -13.48453 -13.12809 -13.05446 -12.87212 -12.56680 -12.53664 -12.28597 -12.16513 -12.12728 -12.09556 -11.92377 -11.78854 -11.51647 -11.37092 -11.18220 -11.12240 -10.75442 -10.55831 -10.11659 -9.69741 -9.08269 -8.78918 -8.44915 -6.12695 0.67537 0.79047 1.34456 1.45662 1.50913 2.19041 2.84441 3.05781 3.15590 3.24470 3.47382 3.57475 3.60403 3.63866 3.88489 3.98197 4.10471 4.13496 4.19840 4.23609 4.28200 4.36741 4.39504 4.48338 4.54109 4.59160 4.65656 4.67166 4.77452 4.80128 4.86051 4.90633 4.95488 4.96701 4.98996 5.03316 5.14418 5.16147 5.19588 5.21553 5.30567 5.33324 5.37132 5.41277 5.58398 5.66550 5.77564 5.85547 6.06418 6.27201 6.34665 6.47930 6.54329 6.99622 7.00005 7.83448 8.78588 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.002526 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.809773 B =11080.040001 C =11665.003948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.148 3.852 3 H 0.090 0.910 4 N -0.669 5.669 5 C 0.084 3.916 6 H 0.110 0.890 7 C -0.183 4.183 8 C 0.090 3.910 9 H 0.098 0.902 10 O -0.573 6.573 11 C -0.068 4.068 12 C -0.093 4.093 13 C 0.049 3.951 14 O -0.415 6.415 15 C 0.062 3.938 16 C -0.131 4.131 17 C -0.137 4.137 18 C -0.068 4.068 19 C -0.242 4.242 20 C 0.109 3.891 21 O -0.237 6.237 22 C -0.412 4.412 23 H 0.100 0.900 24 C -0.025 4.025 25 N -0.923 5.923 26 Si 1.017 2.983 27 H -0.256 1.256 28 H -0.272 1.272 29 H -0.258 1.258 30 C -0.207 4.207 31 C -0.046 4.046 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.347 0.653 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.392 0.608 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.138 0.862 48 H 0.114 0.886 49 H 0.272 0.728 50 H 0.105 0.895 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.713 13.860 -24.577 29.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.039 3.961 3 H 0.108 0.892 4 N -0.299 5.299 5 C -0.027 4.027 6 H 0.128 0.872 7 C -0.222 4.222 8 C 0.031 3.969 9 H 0.116 0.884 10 O -0.381 6.381 11 C -0.069 4.069 12 C -0.131 4.131 13 C -0.028 4.028 14 O -0.335 6.335 15 C -0.014 4.014 16 C -0.169 4.169 17 C -0.138 4.138 18 C -0.087 4.087 19 C -0.262 4.262 20 C 0.059 3.941 21 O -0.144 6.144 22 C -0.488 4.488 23 H 0.117 0.883 24 C -0.222 4.222 25 N -0.562 5.562 26 Si 0.836 3.164 27 H -0.180 1.180 28 H -0.197 1.197 29 H -0.183 1.183 30 C -0.226 4.226 31 C -0.064 4.064 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.168 0.832 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.241 0.759 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.156 0.844 48 H 0.132 0.868 49 H 0.081 0.919 50 H 0.123 0.877 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.342 13.151 -23.910 28.258 hybrid contribution -0.952 0.178 0.587 1.132 sum -8.294 13.329 -23.323 28.114 Atomic orbital electron populations 1.22440 0.95458 1.02312 1.02508 1.20229 0.92933 0.96520 0.86447 0.89208 1.60408 1.57166 1.09345 1.03001 1.22886 0.94716 0.96905 0.88179 0.87191 1.24284 0.97891 1.02925 0.97122 1.23207 0.95524 0.93543 0.84666 0.88432 1.86517 1.64813 1.52717 1.34035 1.21956 0.94081 0.95772 0.95085 1.21372 0.99373 0.94651 0.97694 1.22936 0.86207 0.93617 1.00021 1.87794 1.33567 1.18045 1.94060 1.22580 0.99844 0.81272 0.97732 1.22063 0.95802 1.00107 0.98899 1.19655 1.04949 0.93083 0.96090 1.20910 0.96097 0.99911 0.91745 1.21199 1.10258 0.93416 1.01291 1.19935 0.93936 0.92528 0.87724 1.83940 1.70311 1.36524 1.23638 1.21756 1.38350 0.91317 0.97368 0.88262 1.26579 0.96999 0.97801 1.00812 1.70181 1.44257 1.11003 1.30761 0.84672 0.78837 0.77087 0.75775 1.18046 1.19657 1.18266 1.20454 1.09318 0.99254 0.93621 1.20639 0.96229 0.94358 0.95188 0.92588 0.90835 0.92727 0.83205 0.89643 0.89711 0.75881 0.90835 0.93328 0.90986 0.89735 0.89195 0.93248 0.92056 0.88975 0.84381 0.86817 0.91936 0.87660 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.14 71.98 0.66 -1.97 16 2 C 0.15 2.74 2.78 44.17 0.12 2.87 16 3 H 0.09 1.52 7.32 -2.38 -0.02 1.50 16 4 N -0.67 -10.99 2.85 -471.25 -1.34 -12.34 16 5 C 0.08 1.06 3.35 45.32 0.15 1.21 16 6 H 0.11 1.21 7.36 -2.39 -0.02 1.19 16 7 C -0.18 -1.79 7.18 31.18 0.22 -1.57 16 8 C 0.09 1.02 4.67 30.99 0.14 1.16 16 9 H 0.10 0.77 8.10 -2.39 -0.02 0.75 16 10 O -0.57 -7.65 12.75 -148.98 -1.90 -9.55 16 11 C -0.07 -1.05 0.75 -52.09 -0.04 -1.09 16 12 C -0.09 -1.88 4.22 30.63 0.13 -1.75 16 13 C 0.05 1.22 6.67 72.07 0.48 1.70 16 14 O -0.42 -11.89 10.72 -148.98 -1.60 -13.48 16 15 C 0.06 1.37 6.78 72.07 0.49 1.86 16 16 C -0.13 -2.16 5.33 30.63 0.16 -1.99 16 17 C -0.14 -3.90 4.96 -19.83 -0.10 -4.00 16 18 C -0.07 -2.26 9.66 22.25 0.21 -2.04 16 19 C -0.24 -10.59 9.17 22.39 0.21 -10.38 16 20 C 0.11 5.50 6.65 22.58 0.15 5.65 16 21 O -0.24 -14.64 9.76 -22.86 -0.22 -14.86 16 22 C -0.41 -24.53 9.49 67.92 0.64 -23.88 16 23 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 24 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 25 N -0.92 -58.02 13.67 21.61 0.30 -57.72 16 26 Si 1.02 43.74 29.55 68.60 2.03 45.77 16 27 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 30 C -0.21 -8.94 9.99 22.39 0.22 -8.71 16 31 C -0.05 -1.49 9.32 22.25 0.21 -1.28 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.07 0.83 8.07 -2.39 -0.02 0.81 16 34 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 35 H 0.35 5.40 6.84 -89.70 -0.61 4.79 16 36 H 0.09 0.99 7.33 -2.39 -0.02 0.97 16 37 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.39 1.86 9.12 -74.06 -0.68 1.18 16 39 H 0.07 1.38 6.91 -2.39 -0.02 1.36 16 40 H 0.05 1.15 7.99 -2.39 -0.02 1.13 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 2.25 5.97 -2.38 -0.01 2.23 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 45 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.09 1.07 8.04 -2.39 -0.02 1.05 16 47 H 0.14 3.60 8.03 -2.91 -0.02 3.58 16 48 H 0.11 5.10 5.64 -2.91 -0.02 5.09 16 49 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 50 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 51 H 0.14 3.60 7.24 -2.91 -0.02 3.58 16 Total: -1.00 -76.39 398.69 1.46 -74.93 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.33 Total: 32.46 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 4.54 Total: -45.20 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.05 Total: -70.06 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -3.72 Total: -37.89 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -76.39 1.46 -74.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927153631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.928 kcal (2) G-P(sol) polarization free energy of solvation -76.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds