Wall clock time and date at job start Wed Apr 1 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45207 * 109.46912 * 2 1 4 4 C 1.34229 * 116.99649 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00230 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00046 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.46980 * 292.44581 * 6 4 3 8 8 C 1.53003 * 109.47096 * 52.44580 * 6 4 3 9 9 C 1.50698 * 109.47156 * 187.78368 * 8 6 4 10 10 C 1.38232 * 119.99624 * 276.67108 * 9 8 6 11 11 C 1.38236 * 119.99630 * 179.76780 * 10 9 8 12 12 C 1.38232 * 120.00078 * 0.50417 * 11 10 9 13 13 C 1.38235 * 119.99863 * 359.74562 * 12 11 10 14 14 C 1.38227 * 120.00005 * 0.02562 * 13 12 11 15 15 N 1.46901 * 109.47177 * 172.44639 * 6 4 3 16 16 C 1.46893 * 111.00174 * 76.40898 * 15 6 4 17 17 C 1.53003 * 109.47507 * 173.08169 * 16 15 6 18 18 H 1.09000 * 109.46515 * 61.58362 * 17 16 15 19 19 O 1.42897 * 109.46825 * 301.58849 * 17 16 15 20 20 C 1.50697 * 109.47487 * 181.58459 * 17 16 15 21 21 H 1.08002 * 119.99447 * 0.02562 * 20 17 16 22 22 C 1.37869 * 119.99857 * 179.97438 * 20 17 16 23 23 N 1.31511 * 120.00211 * 0.02562 * 22 20 17 24 24 Si 1.86806 * 119.99918 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.46640 * 90.00153 * 24 22 20 26 26 H 1.48501 * 109.47479 * 209.99956 * 24 22 20 27 27 H 1.48500 * 109.47204 * 330.00428 * 24 22 20 28 28 C 1.46901 * 110.99875 * 312.45390 * 15 6 4 29 29 C 1.53000 * 117.49883 * 351.32945 * 28 15 6 30 30 C 1.52994 * 117.50060 * 282.66543 * 28 15 6 31 31 H 1.08992 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47172 * 299.99874 * 1 2 3 33 33 H 1.09004 * 109.47179 * 59.99263 * 1 2 3 34 34 H 1.08999 * 109.46720 * 240.00327 * 2 1 3 35 35 H 1.09000 * 109.47436 * 120.00291 * 2 1 3 36 36 H 1.09003 * 109.47044 * 307.78187 * 8 6 4 37 37 H 1.09001 * 109.46849 * 67.77824 * 8 6 4 38 38 H 1.08001 * 120.00387 * 359.97438 * 10 9 8 39 39 H 1.08003 * 120.00300 * 180.23091 * 11 10 9 40 40 H 1.07998 * 120.00003 * 179.73112 * 12 11 10 41 41 H 1.08002 * 119.99965 * 179.97438 * 13 12 11 42 42 H 1.07997 * 119.99964 * 179.97438 * 14 13 12 43 43 H 1.08996 * 109.47523 * 293.08420 * 16 15 6 44 44 H 1.08999 * 109.47117 * 53.08514 * 16 15 6 45 45 H 0.96698 * 114.00435 * 299.99185 * 19 17 16 46 46 H 0.97002 * 120.00121 * 179.97438 * 23 22 20 47 47 H 1.09005 * 115.54707 * 136.99821 * 28 15 6 48 48 H 1.08993 * 117.50236 * 359.97438 * 29 28 15 49 49 H 1.08997 * 117.49592 * 145.02137 * 29 28 15 50 50 H 1.09004 * 117.49714 * 214.97889 * 30 28 15 51 51 H 1.08997 * 117.50224 * 0.02562 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.6966 3.4237 -0.9494 8 6 3.3038 3.7441 1.1444 9 6 3.7316 5.1847 1.0312 10 6 4.9529 5.5849 1.5402 11 6 5.3475 6.9053 1.4322 12 6 4.5162 7.8275 0.8244 13 6 3.2927 7.4283 0.3200 14 6 2.9002 6.1070 0.4239 15 7 5.3767 2.8650 0.1813 16 6 6.0421 2.4514 -1.0612 17 6 7.5586 2.5534 -0.8862 18 1 7.8783 1.8816 -0.0895 19 8 7.9096 3.8963 -0.5464 20 6 8.2401 2.1663 -2.1733 21 1 7.6504 1.8770 -3.0306 22 6 9.6162 2.1827 -2.2567 23 7 10.3341 2.5355 -1.2128 24 14 10.4609 1.7036 -3.8525 25 1 10.6434 2.9109 -4.6977 26 1 11.7864 1.1056 -3.5508 27 1 9.6246 0.7135 -4.5774 28 6 5.7251 1.9659 1.2895 29 6 4.5821 1.4465 2.1640 30 6 5.5495 2.4982 2.7131 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5140 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.2170 3.6824 1.0878 37 1 3.6415 3.3385 2.0981 38 1 5.6003 4.8653 2.0194 39 1 6.3033 7.2174 1.8265 40 1 4.8226 8.8600 0.7438 41 1 2.6430 8.1489 -0.1545 42 1 1.9441 5.7951 0.0302 43 1 5.7715 1.4212 -1.2928 44 1 5.7260 3.1021 -1.8766 45 1 7.6547 4.5499 -1.2119 46 1 11.3023 2.5466 -1.2714 47 1 6.5623 1.2930 1.1035 48 1 3.5716 1.7723 1.9173 49 1 4.6674 0.4322 2.5536 50 1 6.2708 2.1751 3.4638 51 1 5.1750 3.5154 2.8275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929968435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:41 Heat of formation + Delta-G solvation = -62.679820 kcal Electronic energy + Delta-G solvation = -32822.312369 eV Core-core repulsion = 28688.454837 eV Total energy + Delta-G solvation = -4133.857532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.66970 -40.22053 -39.38748 -37.64908 -37.25189 -35.15211 -34.24023 -33.83447 -32.57934 -31.56464 -30.74654 -29.08933 -26.23781 -25.77081 -24.02839 -23.76334 -23.17088 -23.09941 -22.19408 -21.65194 -20.97917 -19.18514 -18.90145 -18.00289 -17.40130 -17.32263 -17.06573 -16.66828 -16.30973 -15.92921 -15.86831 -15.55875 -15.29406 -15.26539 -14.66529 -14.53775 -14.37114 -14.23912 -13.88498 -13.75507 -13.60559 -13.49813 -13.28060 -12.98085 -12.96505 -12.86250 -12.74452 -12.63252 -12.47259 -12.30695 -12.06156 -12.03101 -11.95481 -11.65258 -11.55210 -11.50828 -11.23486 -11.02221 -10.93447 -10.68728 -10.06628 -9.59672 -9.42148 -9.08070 -8.12847 -6.38343 0.60238 0.73581 1.16688 1.38345 1.38907 1.49500 1.64430 2.36013 2.61295 3.03317 3.08386 3.13421 3.63549 3.77720 3.90420 3.92920 3.97212 4.01286 4.10306 4.14648 4.15648 4.28344 4.34746 4.35869 4.41130 4.44052 4.44938 4.57218 4.67512 4.72368 4.76484 4.79512 4.86074 4.87491 4.93873 4.94521 5.04678 5.06191 5.15797 5.18047 5.34461 5.40579 5.46344 5.61162 5.75052 5.76090 5.85902 5.91274 5.96109 6.04078 6.14691 6.33487 6.73375 6.75755 7.35350 7.64657 8.91288 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.008024 B = 0.004459 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.815550 B = 6278.192410 C = 8439.741747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.439 3.561 5 O -0.523 6.523 6 C 0.092 3.908 7 H 0.123 0.877 8 C -0.080 4.080 9 C -0.080 4.080 10 C -0.102 4.102 11 C -0.137 4.137 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.122 4.122 15 N -0.451 5.451 16 C 0.043 3.957 17 C 0.249 3.751 18 H 0.017 0.983 19 O -0.560 6.560 20 C -0.589 4.589 21 H 0.053 0.947 22 C 0.030 3.970 23 N -0.896 5.896 24 Si 0.956 3.044 25 H -0.270 1.270 26 H -0.283 1.283 27 H -0.269 1.269 28 C 0.025 3.975 29 C -0.193 4.193 30 C -0.177 4.177 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.349 0.651 46 H 0.261 0.739 47 H 0.078 0.922 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 4.126 5.658 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.282 3.718 5 O -0.412 6.412 6 C -0.019 4.019 7 H 0.140 0.860 8 C -0.117 4.117 9 C -0.080 4.080 10 C -0.120 4.120 11 C -0.155 4.155 12 C -0.148 4.148 13 C -0.148 4.148 14 C -0.140 4.140 15 N -0.172 5.172 16 C -0.084 4.084 17 C 0.191 3.809 18 H 0.035 0.965 19 O -0.363 6.363 20 C -0.628 4.628 21 H 0.071 0.929 22 C -0.172 4.172 23 N -0.533 5.533 24 Si 0.781 3.219 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.194 1.194 28 C -0.084 4.084 29 C -0.231 4.231 30 C -0.214 4.214 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.193 0.807 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.126 0.874 49 H 0.107 0.893 50 H 0.116 0.884 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.335 4.001 6.376 22.624 hybrid contribution 0.884 -1.435 -1.583 2.312 sum -20.451 2.566 4.794 21.161 Atomic orbital electron populations 1.21800 0.90030 1.04225 1.03918 1.23235 0.97263 0.79724 1.01977 1.86547 1.23780 1.33262 1.83792 1.25090 0.81134 0.94065 0.71521 1.90744 1.60685 1.43806 1.45967 1.22027 0.88159 0.88358 1.03348 0.85984 1.21133 1.01527 0.91429 0.97605 1.19580 0.94813 0.94430 0.99205 1.21277 0.95800 0.95824 0.99084 1.21311 0.99877 0.93872 1.00424 1.21365 0.94845 1.00015 0.98546 1.21356 0.96800 0.96449 1.00189 1.21302 1.00216 0.93230 0.99203 1.62380 1.03315 1.46836 1.04641 1.22801 0.97298 0.97996 0.90346 1.19006 0.87150 0.81515 0.93263 0.96542 1.86514 1.84685 1.17377 1.47720 1.22018 0.92580 1.48746 0.99426 0.92862 1.25815 0.98214 0.93817 0.99386 1.70216 1.05830 1.46180 1.31028 0.85619 0.77731 0.78711 0.79861 1.19507 1.20817 1.19372 1.22282 0.99511 0.97462 0.89133 1.23790 0.95435 0.99040 1.04807 1.23672 1.02262 0.99674 0.95803 0.88567 0.90768 0.91211 0.92412 0.91656 0.87342 0.88593 0.86489 0.86466 0.84912 0.84094 0.84158 0.95437 0.91137 0.80700 0.93037 0.90378 0.87369 0.89250 0.88408 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.29 71.98 0.74 -1.02 16 2 C 0.05 1.03 6.19 71.98 0.45 1.48 16 3 O -0.36 -8.53 9.73 -51.41 -0.50 -9.03 16 4 C 0.44 12.92 4.53 71.24 0.32 13.24 16 5 O -0.52 -19.00 11.52 21.95 0.25 -18.75 16 6 C 0.09 2.61 2.16 44.17 0.10 2.71 16 7 H 0.12 3.32 7.83 -2.39 -0.02 3.30 16 8 C -0.08 -1.83 4.01 29.85 0.12 -1.71 16 9 C -0.08 -1.96 5.06 -19.87 -0.10 -2.06 16 10 C -0.10 -2.89 8.77 22.27 0.20 -2.69 16 11 C -0.14 -3.66 10.05 22.27 0.22 -3.43 16 12 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 13 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 14 C -0.12 -2.53 9.67 22.27 0.22 -2.31 16 15 N -0.45 -16.10 3.64 -850.28 -3.10 -19.20 16 16 C 0.04 1.87 4.24 86.31 0.37 2.24 16 17 C 0.25 13.11 2.69 29.85 0.08 13.19 16 18 H 0.02 1.01 6.47 -2.39 -0.02 0.99 16 19 O -0.56 -29.63 12.56 -148.98 -1.87 -31.51 16 20 C -0.59 -33.46 8.76 25.60 0.22 -33.23 16 21 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 22 C 0.03 1.74 5.40 84.65 0.46 2.20 16 23 N -0.90 -54.56 12.84 21.44 0.28 -54.29 16 24 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.03 0.94 4.24 44.91 0.19 1.13 16 29 C -0.19 -5.71 6.67 30.62 0.20 -5.51 16 30 C -0.18 -5.29 9.22 30.62 0.28 -5.00 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 35 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 36 H 0.11 1.95 7.65 -2.39 -0.02 1.93 16 37 H 0.10 2.27 3.23 -2.39 -0.01 2.26 16 38 H 0.12 3.67 5.17 -2.91 -0.02 3.66 16 39 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.03 1.28 6.66 -2.39 -0.02 1.26 16 44 H 0.07 2.90 7.93 -2.39 -0.02 2.88 16 45 H 0.35 16.83 9.04 -74.06 -0.67 16.16 16 46 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 47 H 0.08 3.53 6.40 -2.38 -0.02 3.51 16 48 H 0.11 2.89 3.38 -2.39 -0.01 2.88 16 49 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 51 H 0.12 3.23 3.81 -2.39 -0.01 3.22 16 Total: -1.00 -69.84 396.04 1.88 -67.96 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: 0.29 Total: 44.20 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.51 Total: -25.89 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -2.82 Total: -73.49 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -2.12 Total: -59.28 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.84 1.88 -67.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929968435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.283 kcal (2) G-P(sol) polarization free energy of solvation -69.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds